HEADER TRANSFERASE/DNA 23-JAN-16 5HRF TITLE THE CRYSTAL STRUCTURE OF ASFVPOLX: DNA5: DGTP TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PO174L, POLX; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*AP*GP*GP*AP*TP*CP*CP*T*)-3'); COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: ASFV; SOURCE 4 ORGANISM_TAXID: 10497; SOURCE 5 GENE: O174L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS ASFV, POLX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.Q.CHEN,J.ZHANG,J.H.GAN REVDAT 2 20-MAR-24 5HRF 1 LINK REVDAT 1 18-JAN-17 5HRF 0 JRNL AUTH Y.Q.CHEN,J.ZHANG,J.H.GAN JRNL TITL THE CRYSTAL STRUCTURE OF SE-ASFVPOLX(L52/163M MUTANT) IN JRNL TITL 2 COMPLEX WITH 1NT-GAP DNA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 21028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1477 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 358 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.97000 REMARK 3 B22 (A**2) : -5.53000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.726 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3298 ; 0.006 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 3079 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4529 ; 1.164 ; 1.906 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7043 ; 1.064 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 5.175 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;30.797 ;22.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;14.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3307 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 725 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6377 ; 1.709 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 25 ;74.507 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6328 ;10.191 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 173 B 0 173 10533 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6344 12.6434 2.5943 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.2797 REMARK 3 T33: 0.2130 T12: -0.0056 REMARK 3 T13: 0.0213 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.0973 L22: 1.7982 REMARK 3 L33: 1.3441 L12: 0.0514 REMARK 3 L13: -0.3963 L23: -0.2343 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.0169 S13: -0.1133 REMARK 3 S21: -0.0101 S22: 0.0317 S23: 0.0877 REMARK 3 S31: -0.0215 S32: -0.0200 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8257 34.6618 6.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.2542 REMARK 3 T33: 0.2171 T12: -0.0399 REMARK 3 T13: -0.0051 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.4274 L22: 1.3217 REMARK 3 L33: 2.9995 L12: -0.5430 REMARK 3 L13: -0.2692 L23: 0.3208 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.0887 S13: 0.1913 REMARK 3 S21: -0.1993 S22: -0.0197 S23: 0.0092 REMARK 3 S31: -0.1863 S32: 0.0621 S33: -0.0848 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2629 21.3522 30.4832 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.3175 REMARK 3 T33: 0.2115 T12: -0.0740 REMARK 3 T13: -0.0511 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.3061 L22: 2.1731 REMARK 3 L33: 1.8790 L12: -0.5011 REMARK 3 L13: 0.1195 L23: 0.8098 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: 0.2201 S13: 0.0277 REMARK 3 S21: 0.0013 S22: -0.0644 S23: -0.3576 REMARK 3 S31: -0.2482 S32: 0.4716 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8888 26.4859 41.4251 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.2651 REMARK 3 T33: 0.2038 T12: 0.0670 REMARK 3 T13: -0.0146 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.1019 L22: 2.5011 REMARK 3 L33: 3.6612 L12: -0.3293 REMARK 3 L13: 0.5883 L23: 0.8430 REMARK 3 S TENSOR REMARK 3 S11: -0.2403 S12: -0.3572 S13: 0.0926 REMARK 3 S21: 0.0109 S22: -0.0630 S23: 0.1564 REMARK 3 S31: -0.1052 S32: -0.2290 S33: 0.3033 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3098 20.3079 17.6176 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.3396 REMARK 3 T33: 0.2437 T12: 0.0250 REMARK 3 T13: -0.0507 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.7118 L22: 0.2171 REMARK 3 L33: 1.5204 L12: -0.3139 REMARK 3 L13: 0.9284 L23: -0.5634 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: -0.0459 S13: 0.0177 REMARK 3 S21: 0.0748 S22: 0.0539 S23: -0.0146 REMARK 3 S31: -0.1668 S32: -0.0821 S33: 0.0124 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9611 21.0937 19.9149 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.2552 REMARK 3 T33: 0.2324 T12: 0.0246 REMARK 3 T13: -0.0037 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.2917 L22: 0.4593 REMARK 3 L33: 2.7619 L12: 0.3179 REMARK 3 L13: 0.8998 L23: -0.6739 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: 0.0978 S13: -0.0945 REMARK 3 S21: 0.0012 S22: -0.0051 S23: -0.0644 REMARK 3 S31: -0.1477 S32: 0.1521 S33: 0.1155 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 27.372 24.613 2.519 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1804 REMARK 3 T33: 0.1349 T12: 0.0197 REMARK 3 T13: 0.0239 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 15.2260 L22: 14.6696 REMARK 3 L33: 6.1492 L12: -9.6003 REMARK 3 L13: 7.3829 L23: -0.3218 REMARK 3 S TENSOR REMARK 3 S11: -0.2843 S12: -0.5396 S13: 0.1472 REMARK 3 S21: 0.2826 S22: 0.2884 S23: -0.1780 REMARK 3 S31: -0.1073 S32: -0.4182 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 203 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): 39.305 15.247 33.926 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.2926 REMARK 3 T33: 0.2480 T12: -0.0137 REMARK 3 T13: -0.0454 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 3.2075 L22: 9.5472 REMARK 3 L33: 6.8411 L12: -1.0737 REMARK 3 L13: -2.6028 L23: 7.4584 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: -0.0534 S13: -0.0902 REMARK 3 S21: 0.0402 S22: -0.3643 S23: 0.2542 REMARK 3 S31: -0.0369 S32: -0.2461 S33: 0.2736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE PH 7.0 20% W/V REMARK 280 PEG 3,350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.35300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.72050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.35300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.72050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 ASN B 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -3 OG REMARK 470 LYS A 9 CD CE NZ REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 28 CE NZ REMARK 470 LYS A 45 CD CE NZ REMARK 470 LYS A 60 NZ REMARK 470 LYS A 63 CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 79 CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 133 NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 LYS A 152 CD CE NZ REMARK 470 LYS A 172 CE NZ REMARK 470 LYS B 9 NZ REMARK 470 TYR B 22 C O REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 LYS B 28 CD CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LYS B 59 CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 SER B 75 OG REMARK 470 LYS B 79 CE NZ REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LYS B 95 CD CE NZ REMARK 470 LYS B 132 CD CE NZ REMARK 470 LYS B 133 CE NZ REMARK 470 LYS B 157 CD CE NZ REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 ARG B 168 NE CZ NH1 NH2 REMARK 470 LYS B 171 CD CE NZ REMARK 470 LYS B 172 CD CE NZ REMARK 470 DT C 9 O3' REMARK 470 DT D 9 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 C5' - C4' - O4' ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 37 -163.93 -126.50 REMARK 500 LYS A 79 -65.40 -90.35 REMARK 500 GLU A 93 53.77 38.41 REMARK 500 VAL B 37 -164.78 -127.59 REMARK 500 VAL B 65 -70.10 -65.69 REMARK 500 GLU B 93 -126.35 63.40 REMARK 500 LYS B 152 66.18 -100.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASP A 51 OD2 100.3 REMARK 620 3 DGT A 202 O1G 92.0 167.7 REMARK 620 4 DGT A 202 O2B 173.0 84.7 83.1 REMARK 620 5 DGT A 202 O2A 100.7 87.6 89.8 84.3 REMARK 620 6 HOH A 302 O 93.5 90.7 88.8 81.5 165.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 49 OD1 REMARK 620 2 ASP B 51 OD2 97.6 REMARK 620 3 DGT B 203 O3G 101.5 159.6 REMARK 620 4 DGT B 203 O1A 111.9 99.2 80.3 REMARK 620 5 DGT B 203 O2B 167.9 89.2 70.8 76.6 REMARK 620 6 HOH B 301 O 91.0 94.6 78.0 151.2 78.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGT B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HR9 RELATED DB: PDB REMARK 900 RELATED ID: 5HRB RELATED DB: PDB REMARK 900 RELATED ID: 5HRD RELATED DB: PDB REMARK 900 RELATED ID: 5HRE RELATED DB: PDB REMARK 900 RELATED ID: 5HRG RELATED DB: PDB REMARK 900 RELATED ID: 5HRH RELATED DB: PDB REMARK 900 RELATED ID: 5HRI RELATED DB: PDB REMARK 900 RELATED ID: 5HRK RELATED DB: PDB REMARK 900 RELATED ID: 5HRL RELATED DB: PDB DBREF1 5HRF A 1 174 UNP A0A0A1E3N6_ASF DBREF2 5HRF A A0A0A1E3N6 1 174 DBREF1 5HRF B 1 174 UNP A0A0A1E3N6_ASF DBREF2 5HRF B A0A0A1E3N6 1 174 DBREF 5HRF C 1 9 PDB 5HRF 5HRF 1 9 DBREF 5HRF D 1 9 PDB 5HRF 5HRF 1 9 SEQADV 5HRF SER A -3 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF GLY A -2 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF GLY A -1 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF GLY A 0 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF SER B -3 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF GLY B -2 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF GLY B -1 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRF GLY B 0 UNP A0A0A1E3N EXPRESSION TAG SEQRES 1 A 178 SER GLY GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS SEQRES 2 A 178 ILE VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR SEQRES 3 A 178 ASN GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL SEQRES 4 A 178 ALA VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN SEQRES 5 A 178 ASP VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU SEQRES 6 A 178 LEU LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SEQRES 7 A 178 SER PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL SEQRES 8 A 178 LEU PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP SEQRES 9 A 178 LEU PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE SEQRES 10 A 178 PHE HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE SEQRES 11 A 178 ARG ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN SEQRES 12 A 178 TYR GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS SEQRES 13 A 178 ILE THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE SEQRES 14 A 178 THR TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 B 178 SER GLY GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS SEQRES 2 B 178 ILE VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR SEQRES 3 B 178 ASN GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL SEQRES 4 B 178 ALA VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN SEQRES 5 B 178 ASP VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU SEQRES 6 B 178 LEU LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SEQRES 7 B 178 SER PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL SEQRES 8 B 178 LEU PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP SEQRES 9 B 178 LEU PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE SEQRES 10 B 178 PHE HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE SEQRES 11 B 178 ARG ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN SEQRES 12 B 178 TYR GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS SEQRES 13 B 178 ILE THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE SEQRES 14 B 178 THR TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 C 9 DC DA DG DG DA DT DC DC DT SEQRES 1 D 9 DC DA DG DG DA DT DC DC DT HET MN A 201 1 HET DGT A 202 31 HET MN B 201 1 HET SO4 B 202 5 HET DGT B 203 31 HET SO4 D 101 5 HETNAM MN MANGANESE (II) ION HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 5 MN 2(MN 2+) FORMUL 6 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 SO4 2(O4 S 2-) FORMUL 11 HOH *79(H2 O) HELIX 1 AA1 LEU A 4 SER A 16 1 13 HELIX 2 AA2 LEU A 30 LYS A 32 5 3 HELIX 3 AA3 VAL A 37 ARG A 42 1 6 HELIX 4 AA4 GLU A 58 LEU A 62 5 5 HELIX 5 AA5 GLU A 108 GLY A 118 1 11 HELIX 6 AA6 PRO A 119 LYS A 133 1 15 HELIX 7 AA7 THR A 155 GLY A 164 1 10 HELIX 8 AA8 ILE A 169 ARG A 173 5 5 HELIX 9 AA9 LEU B 4 SER B 16 1 13 HELIX 10 AB1 LEU B 30 LYS B 32 5 3 HELIX 11 AB2 VAL B 37 ARG B 42 1 6 HELIX 12 AB3 GLU B 58 LEU B 62 5 5 HELIX 13 AB4 GLU B 108 GLY B 118 1 11 HELIX 14 AB5 PRO B 119 LYS B 133 1 15 HELIX 15 AB6 THR B 155 LEU B 163 1 9 HELIX 16 AB7 ILE B 169 ARG B 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 GLN A 25 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 TYR A 22 -1 N TYR A 22 O GLN A 25 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 ALA A 36 0 SHEET 2 AA3 5 VAL A 50 VAL A 56 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 LYS A 95 LEU A 105 1 O ASP A 100 N VAL A 50 SHEET 4 AA3 5 LYS A 85 TRP A 92 -1 N CYS A 86 O LEU A 101 SHEET 5 AA3 5 PHE A 76 CYS A 81 -1 N LYS A 79 O VAL A 87 SHEET 1 AA4 3 TYR A 135 LEU A 137 0 SHEET 2 AA4 3 LEU A 142 LYS A 144 -1 O PHE A 143 N LYS A 136 SHEET 3 AA4 3 THR A 147 LEU A 148 -1 O THR A 147 N LYS A 144 SHEET 1 AA5 2 LEU B 2 THR B 3 0 SHEET 2 AA5 2 MET B 46 LEU B 47 -1 O LEU B 47 N LEU B 2 SHEET 1 AA6 3 LEU B 26 LYS B 28 0 SHEET 2 AA6 3 LEU B 18 GLU B 21 -1 N PHE B 20 O ILE B 27 SHEET 3 AA6 3 ILE B 69 ILE B 71 -1 O ARG B 70 N ALA B 19 SHEET 1 AA7 5 ILE B 34 ALA B 36 0 SHEET 2 AA7 5 VAL B 50 VAL B 56 -1 O LEU B 53 N VAL B 35 SHEET 3 AA7 5 LYS B 95 LEU B 105 1 O ASP B 100 N VAL B 50 SHEET 4 AA7 5 LYS B 85 TRP B 92 -1 N CYS B 86 O LEU B 101 SHEET 5 AA7 5 PHE B 76 CYS B 81 -1 N LYS B 79 O VAL B 87 SHEET 1 AA8 3 TYR B 135 LEU B 137 0 SHEET 2 AA8 3 LEU B 142 LYS B 144 -1 O PHE B 143 N LYS B 136 SHEET 3 AA8 3 THR B 147 LEU B 148 -1 O THR B 147 N LYS B 144 LINK OD1 ASP A 49 MN MN A 201 1555 1555 2.01 LINK OD2 ASP A 51 MN MN A 201 1555 1555 2.04 LINK MN MN A 201 O1G DGT A 202 1555 1555 2.03 LINK MN MN A 201 O2B DGT A 202 1555 1555 2.03 LINK MN MN A 201 O2A DGT A 202 1555 1555 2.03 LINK MN MN A 201 O HOH A 302 1555 1555 2.04 LINK OD1 ASP B 49 MN MN B 201 1555 1555 2.05 LINK OD2 ASP B 51 MN MN B 201 1555 1555 2.06 LINK MN MN B 201 O3G DGT B 203 1555 1555 2.05 LINK MN MN B 201 O1A DGT B 203 1555 1555 2.03 LINK MN MN B 201 O2B DGT B 203 1555 1555 2.03 LINK MN MN B 201 O HOH B 301 1555 1555 2.04 CISPEP 1 GLY A 118 PRO A 119 0 -0.09 CISPEP 2 GLY B 118 PRO B 119 0 -1.00 SITE 1 AC1 4 ASP A 49 ASP A 51 DGT A 202 HOH A 302 SITE 1 AC2 21 LYS A 32 GLY A 38 SER A 39 ARG A 42 SITE 2 AC2 21 LEU A 47 ASN A 48 ASP A 49 ASP A 51 SITE 3 AC2 21 HIS A 115 PHE A 116 THR A 117 GLY A 118 SITE 4 AC2 21 VAL A 120 ARG A 127 MN A 201 HOH A 302 SITE 5 AC2 21 HOH A 304 HOH A 316 DC C 1 DA C 2 SITE 6 AC2 21 DT D 9 SITE 1 AC3 4 ASP B 49 ASP B 51 DGT B 203 HOH B 301 SITE 1 AC4 4 TYR A 135 GLU A 162 GLU B 44 LYS B 45 SITE 1 AC5 21 LYS A 144 SER B 39 ARG B 42 LEU B 47 SITE 2 AC5 21 ASN B 48 ASP B 49 ASP B 51 HIS B 115 SITE 3 AC5 21 PHE B 116 THR B 117 GLY B 118 VAL B 120 SITE 4 AC5 21 ARG B 127 MN B 201 HOH B 301 HOH B 312 SITE 5 AC5 21 HOH B 315 HOH B 317 DT C 9 DC D 1 SITE 6 AC5 21 DA D 2 SITE 1 AC6 5 SER A -3 ARG A 15 LYS A 32 ILE A 34 SITE 2 AC6 5 DC D 8 CRYST1 58.706 75.441 108.450 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017034 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009221 0.00000