HEADER TRANSFERASE/TRANSFERASE INHIBITOR 23-JAN-16 5HRO TITLE STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A DNA APTAMER TITLE 2 AND AN ALPHA-CARBOXY NUCLEOSIDE PHOSPHONATE INHIBITOR (ALPHA-CNP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: PR160GAG-POL; COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: PR160GAG-POL; COMPND 11 EC: 2.7.7.49; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (38-MER); COMPND 15 CHAIN: E, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B (ISOLATE BH10); SOURCE 13 ORGANISM_COMMON: HIV-1; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 STRAIN: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS RT, DNA APTAMER, NCRTI, NUCLEOTIDE-COMPETING RT INHIBITOR, 2-O- KEYWDS 2 METHYLCYTIDINE, P51, P66, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.DAS,E.ARNOLD REVDAT 7 27-SEP-23 5HRO 1 HETSYN REVDAT 6 29-JUL-20 5HRO 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 FORMUL LINK SITE ATOM REVDAT 5 11-DEC-19 5HRO 1 REMARK REVDAT 4 20-SEP-17 5HRO 1 REMARK REVDAT 3 31-AUG-16 5HRO 1 JRNL REVDAT 2 15-JUN-16 5HRO 1 JRNL REVDAT 1 01-JUN-16 5HRO 0 JRNL AUTH K.DAS,J.BALZARINI,M.T.MILLER,A.R.MAGUIRE,J.J.DESTEFANO, JRNL AUTH 2 E.ARNOLD JRNL TITL CONFORMATIONAL STATES OF HIV-1 REVERSE TRANSCRIPTASE FOR JRNL TITL 2 NUCLEOTIDE INCORPORATION VS PYROPHOSPHOROLYSIS-BINDING OF JRNL TITL 3 FOSCARNET. JRNL REF ACS CHEM.BIOL. V. 11 2158 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27192549 JRNL DOI 10.1021/ACSCHEMBIO.6B00187 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 73226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5242 - 7.5688 0.91 3265 138 0.1772 0.2045 REMARK 3 2 7.5688 - 6.0150 1.00 3487 152 0.2230 0.2700 REMARK 3 3 6.0150 - 5.2568 0.99 3506 141 0.2287 0.2760 REMARK 3 4 5.2568 - 4.7771 1.00 3487 154 0.2081 0.2311 REMARK 3 5 4.7771 - 4.4353 0.99 3502 141 0.2061 0.2578 REMARK 3 6 4.4353 - 4.1741 0.99 3456 167 0.2203 0.2298 REMARK 3 7 4.1741 - 3.9653 0.99 3440 145 0.2303 0.2345 REMARK 3 8 3.9653 - 3.7928 0.99 3420 142 0.2423 0.2848 REMARK 3 9 3.7928 - 3.6469 0.98 3429 149 0.2426 0.2840 REMARK 3 10 3.6469 - 3.5212 0.97 3385 139 0.2522 0.2536 REMARK 3 11 3.5212 - 3.4111 0.97 3334 158 0.2541 0.3083 REMARK 3 12 3.4111 - 3.3137 0.96 3362 134 0.2644 0.2989 REMARK 3 13 3.3137 - 3.2265 0.96 3331 129 0.2777 0.3209 REMARK 3 14 3.2265 - 3.1478 0.95 3319 137 0.2907 0.3289 REMARK 3 15 3.1478 - 3.0763 0.94 3286 133 0.2953 0.2795 REMARK 3 16 3.0763 - 3.0109 0.94 3282 134 0.2976 0.3595 REMARK 3 17 3.0109 - 2.9506 0.93 3269 122 0.3053 0.3417 REMARK 3 18 2.9506 - 2.8950 0.93 3249 139 0.3143 0.3421 REMARK 3 19 2.8950 - 2.8433 0.93 3209 124 0.3323 0.4011 REMARK 3 20 2.8433 - 2.7951 0.91 3163 130 0.3487 0.3673 REMARK 3 21 2.7951 - 2.7500 0.89 3130 107 0.3594 0.3461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 17957 REMARK 3 ANGLE : 0.745 24668 REMARK 3 CHIRALITY : 0.047 2692 REMARK 3 PLANARITY : 0.005 2844 REMARK 3 DIHEDRAL : 15.382 10484 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 - 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5D3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 8000, 100 MM BISTRIS-PROPANE, REMARK 280 AMMONIUM SULFATE, 5% GLYCEROL, 5% SUCROSE, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.47950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 GLY A 555 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 GLU B -5 REMARK 465 VAL B -4 REMARK 465 LEU B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 DT E -3 REMARK 465 DA E -2 REMARK 465 DA E -1 REMARK 465 PRO C 1 REMARK 465 ILE C 2 REMARK 465 SER C 3 REMARK 465 GLY C 555 REMARK 465 MET D -15 REMARK 465 ALA D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 HIS D -9 REMARK 465 HIS D -8 REMARK 465 ALA D -7 REMARK 465 LEU D -6 REMARK 465 GLU D -5 REMARK 465 VAL D -4 REMARK 465 LEU D -3 REMARK 465 PHE D -2 REMARK 465 GLN D -1 REMARK 465 GLY D 0 REMARK 465 PRO D 1 REMARK 465 ILE D 2 REMARK 465 SER D 3 REMARK 465 ASP D 218 REMARK 465 LYS D 219 REMARK 465 LYS D 220 REMARK 465 HIS D 221 REMARK 465 GLN D 222 REMARK 465 LYS D 223 REMARK 465 GLU D 224 REMARK 465 PRO D 225 REMARK 465 PRO D 226 REMARK 465 PHE D 227 REMARK 465 LEU D 228 REMARK 465 TRP D 229 REMARK 465 MET D 230 REMARK 465 DT F -3 REMARK 465 DA F -2 REMARK 465 DA F -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 248 NH2 ARG D 307 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F 19 O4' DC F 19 C4' 0.054 REMARK 500 DC F 26 O4' DC F 26 C4' 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 19 C5' - C4' - O4' ANGL. DEV. = 8.4 DEGREES REMARK 500 DG E 23 C5' - C4' - O4' ANGL. DEV. = 7.4 DEGREES REMARK 500 DC F 7 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG F 15 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC F 19 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DC F 19 C5' - C4' - O4' ANGL. DEV. = 8.2 DEGREES REMARK 500 DG F 31 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 77.85 47.19 REMARK 500 MET A 184 -120.97 63.10 REMARK 500 VAL A 317 -168.71 -107.07 REMARK 500 PRO A 412 -171.25 -66.81 REMARK 500 ASN A 418 21.20 -78.94 REMARK 500 LYS A 451 16.97 58.94 REMARK 500 THR B 69 -6.08 74.62 REMARK 500 PRO B 140 -178.89 -60.96 REMARK 500 VAL B 148 -168.84 -112.48 REMARK 500 MET B 184 -138.39 48.29 REMARK 500 ASP B 185 3.75 -63.68 REMARK 500 THR B 362 -41.27 -134.74 REMARK 500 ASP C 113 77.43 46.69 REMARK 500 MET C 184 -121.11 63.08 REMARK 500 VAL C 317 -167.74 -109.10 REMARK 500 PRO C 412 -171.59 -66.20 REMARK 500 LYS C 451 16.60 58.09 REMARK 500 GLN D 91 -62.06 -94.03 REMARK 500 PRO D 140 -179.83 -60.88 REMARK 500 VAL D 148 -168.89 -114.00 REMARK 500 MET D 184 -137.04 47.22 REMARK 500 ASP D 185 0.89 -63.25 REMARK 500 THR D 362 -38.52 -130.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 3JY A 603 REMARK 610 3JY C 605 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 VAL A 111 O 67.1 REMARK 620 3 ASP A 185 OD2 81.6 74.1 REMARK 620 4 3JY A 603 O19 164.3 98.5 100.9 REMARK 620 5 3JY A 603 O17 126.7 148.5 131.6 62.7 REMARK 620 6 3JY A 603 O14 106.5 145.3 71.2 88.8 63.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD2 REMARK 620 2 ASP A 185 OD1 110.2 REMARK 620 3 ASP A 185 OD2 83.8 47.5 REMARK 620 4 ASP A 186 OD1 80.3 71.2 104.4 REMARK 620 5 3JY A 603 O14 112.1 92.0 65.8 162.2 REMARK 620 6 DG E 37 O3' 141.0 86.2 128.8 71.8 102.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 ASP A 443 OD2 47.3 REMARK 620 3 ASP A 549 OD2 119.7 75.7 REMARK 620 4 HOH A 701 O 65.7 112.9 160.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 110 OD1 REMARK 620 2 VAL C 111 O 63.8 REMARK 620 3 ASP C 185 OD2 75.4 68.2 REMARK 620 4 3JY C 605 O18 155.5 116.2 128.5 REMARK 620 5 3JY C 605 O17 97.2 138.0 146.6 66.0 REMARK 620 6 3JY C 605 O14 83.3 137.6 78.6 104.9 68.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 110 OD2 REMARK 620 2 ASP C 185 OD1 120.3 REMARK 620 3 ASP C 185 OD2 96.3 52.0 REMARK 620 4 ASP C 186 OD1 77.7 71.3 109.6 REMARK 620 5 3JY C 605 O14 119.0 104.8 80.3 160.4 REMARK 620 6 DG F 37 O3' 145.0 75.0 115.9 78.7 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 443 OD1 REMARK 620 2 ASP C 443 OD2 47.1 REMARK 620 3 ASP C 549 OD2 120.0 74.8 REMARK 620 4 HOH C 701 O 57.1 99.5 170.0 REMARK 620 5 HOH C 702 O 161.5 151.1 78.2 105.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HP1 RELATED DB: PDB REMARK 900 RELATED ID: 5D3G RELATED DB: PDB REMARK 900 RELATED ID: 4R5P RELATED DB: PDB REMARK 900 RELATED ID: 5HLF RELATED DB: PDB REMARK 900 RELATED ID: 5HRO RELATED DB: PDB DBREF 5HRO A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 5HRO B 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 5HRO E -3 37 PDB 5HRO 5HRO -3 37 DBREF 5HRO C 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 5HRO D 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 5HRO F -3 37 PDB 5HRO 5HRO -3 37 SEQADV 5HRO SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HRO MET B -15 UNP P03366 INITIATING METHIONINE SEQADV 5HRO ALA B -14 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS B -13 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS B -12 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS B -11 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS B -10 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS B -9 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS B -8 UNP P03366 EXPRESSION TAG SEQADV 5HRO ALA B -7 UNP P03366 EXPRESSION TAG SEQADV 5HRO LEU B -6 UNP P03366 EXPRESSION TAG SEQADV 5HRO GLU B -5 UNP P03366 EXPRESSION TAG SEQADV 5HRO VAL B -4 UNP P03366 EXPRESSION TAG SEQADV 5HRO LEU B -3 UNP P03366 EXPRESSION TAG SEQADV 5HRO PHE B -2 UNP P03366 EXPRESSION TAG SEQADV 5HRO GLN B -1 UNP P03366 EXPRESSION TAG SEQADV 5HRO GLY B 0 UNP P03366 EXPRESSION TAG SEQADV 5HRO SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HRO SER C 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HRO MET D -15 UNP P03366 INITIATING METHIONINE SEQADV 5HRO ALA D -14 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS D -13 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS D -12 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS D -11 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS D -10 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS D -9 UNP P03366 EXPRESSION TAG SEQADV 5HRO HIS D -8 UNP P03366 EXPRESSION TAG SEQADV 5HRO ALA D -7 UNP P03366 EXPRESSION TAG SEQADV 5HRO LEU D -6 UNP P03366 EXPRESSION TAG SEQADV 5HRO GLU D -5 UNP P03366 EXPRESSION TAG SEQADV 5HRO VAL D -4 UNP P03366 EXPRESSION TAG SEQADV 5HRO LEU D -3 UNP P03366 EXPRESSION TAG SEQADV 5HRO PHE D -2 UNP P03366 EXPRESSION TAG SEQADV 5HRO GLN D -1 UNP P03366 EXPRESSION TAG SEQADV 5HRO GLY D 0 UNP P03366 EXPRESSION TAG SEQADV 5HRO SER D 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 555 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 555 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 555 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 555 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 555 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 555 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 555 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 555 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 555 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 555 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 555 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 555 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 555 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 555 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 555 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 555 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 555 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 555 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 555 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 555 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 A 555 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 555 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 555 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 555 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 555 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 555 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 555 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 555 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 555 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 555 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 555 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 555 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 555 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 555 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 555 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 555 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 555 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 555 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 555 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 555 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 555 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 555 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 555 GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 B 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 B 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 B 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 B 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 B 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 B 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 B 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 B 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 B 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 B 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 B 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 B 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 B 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 B 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 B 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 B 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 B 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 B 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 B 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 B 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 B 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 B 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU SEQRES 24 B 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 B 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 B 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 B 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 B 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 B 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 B 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 B 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 B 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 B 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 B 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 B 444 TYR GLN SEQRES 1 E 38 DT DA DA DT DA DC OMC DC OMC DC DC DC DT SEQRES 2 E 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 E 38 DC DC DG DA DA DG DG DG DG DG DG DG SEQRES 1 C 555 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 C 555 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 C 555 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 C 555 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 C 555 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 C 555 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 C 555 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 C 555 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 C 555 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 C 555 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 C 555 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 C 555 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 C 555 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 C 555 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 C 555 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 C 555 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 C 555 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 C 555 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 C 555 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 C 555 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 C 555 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 C 555 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 C 555 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 C 555 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 C 555 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 C 555 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 C 555 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 C 555 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 C 555 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 C 555 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 C 555 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 C 555 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 C 555 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 C 555 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 C 555 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 C 555 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 C 555 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 C 555 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 C 555 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 C 555 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 C 555 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 C 555 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 C 555 GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 D 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 D 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 D 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 D 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 D 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 D 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 D 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 D 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 D 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 D 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 D 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 D 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 D 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 D 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 D 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 D 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 D 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 D 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 D 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 D 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 D 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 D 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 D 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU SEQRES 24 D 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 D 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 D 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 D 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 D 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 D 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 D 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 D 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 D 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 D 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 D 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 D 444 TYR GLN SEQRES 1 F 38 DT DA DA DT DA DC OMC DC OMC DC DC DC DT SEQRES 2 F 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 F 38 DC DC DG DA DA DG DG DG DG DG DG DG HET OMC E 6 21 HET OMC E 8 21 HET OMC F 6 21 HET OMC F 8 21 HET GLC G 1 11 HET FRU G 2 12 HET GLC H 1 11 HET FRU H 2 12 HET MG A 601 1 HET MG A 602 1 HET 3JY A 603 23 HET MG A 604 1 HET SO4 A 605 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HET MG C 601 1 HET MG C 602 1 HET MG C 603 1 HET SO4 C 604 5 HET 3JY C 605 23 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM MG MAGNESIUM ION HETNAM 3JY [(1R)-2-METHOXY-1-{[(1S,3R)-3-(5-METHYL-2,4-DIOXO-3,4- HETNAM 2 3JY DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}-2- HETNAM 3 3JY OXOETHYL]PHOSPHONIC ACID HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 OMC 4(C10 H16 N3 O8 P) FORMUL 7 GLC 2(C6 H12 O6) FORMUL 7 FRU 2(C6 H12 O6) FORMUL 9 MG 6(MG 2+) FORMUL 11 3JY 2(C13 H19 N2 O8 P) FORMUL 13 SO4 6(O4 S 2-) FORMUL 23 HOH *5(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 PHE A 124 ALA A 129 5 6 HELIX 6 AA6 GLY A 155 ASN A 175 1 21 HELIX 7 AA7 GLU A 194 TRP A 212 1 19 HELIX 8 AA8 THR A 253 SER A 268 1 16 HELIX 9 AA9 VAL A 276 LEU A 282 1 7 HELIX 10 AB1 THR A 296 GLU A 312 1 17 HELIX 11 AB2 ASN A 363 GLY A 384 1 22 HELIX 12 AB3 GLN A 394 TYR A 405 1 12 HELIX 13 AB4 THR A 473 ASP A 488 1 16 HELIX 14 AB5 SER A 499 ALA A 508 1 10 HELIX 15 AB6 SER A 515 LYS A 528 1 14 HELIX 16 AB7 ILE A 542 ALA A 554 1 13 HELIX 17 AB8 THR B 27 GLU B 44 1 18 HELIX 18 AB9 PHE B 77 ARG B 83 1 7 HELIX 19 AC1 THR B 84 GLN B 91 1 8 HELIX 20 AC2 GLY B 99 LYS B 103 5 5 HELIX 21 AC3 GLY B 112 SER B 117 5 6 HELIX 22 AC4 PHE B 124 THR B 128 5 5 HELIX 23 AC5 SER B 134 GLU B 138 5 5 HELIX 24 AC6 LYS B 154 PHE B 160 1 7 HELIX 25 AC7 PHE B 160 ASN B 175 1 16 HELIX 26 AC8 GLU B 194 ARG B 211 1 18 HELIX 27 AC9 HIS B 235 TRP B 239 5 5 HELIX 28 AD1 VAL B 254 SER B 268 1 15 HELIX 29 AD2 VAL B 276 LEU B 282 1 7 HELIX 30 AD3 THR B 296 GLU B 312 1 17 HELIX 31 AD4 ASN B 363 GLY B 384 1 22 HELIX 32 AD5 GLN B 394 TRP B 402 1 9 HELIX 33 AD6 THR B 403 TYR B 405 5 3 HELIX 34 AD7 THR C 27 GLY C 45 1 19 HELIX 35 AD8 PHE C 77 ARG C 83 1 7 HELIX 36 AD9 HIS C 96 LEU C 100 5 5 HELIX 37 AE1 ALA C 114 VAL C 118 5 5 HELIX 38 AE2 ASP C 121 LYS C 126 1 6 HELIX 39 AE3 TYR C 127 ALA C 129 5 3 HELIX 40 AE4 GLY C 155 ASN C 175 1 21 HELIX 41 AE5 GLU C 194 ARG C 211 1 18 HELIX 42 AE6 THR C 253 SER C 268 1 16 HELIX 43 AE7 VAL C 276 LYS C 281 1 6 HELIX 44 AE8 THR C 296 GLU C 312 1 17 HELIX 45 AE9 ASN C 363 GLY C 384 1 22 HELIX 46 AF1 GLN C 394 TYR C 405 1 12 HELIX 47 AF2 THR C 473 ASP C 488 1 16 HELIX 48 AF3 SER C 499 ALA C 508 1 10 HELIX 49 AF4 SER C 515 LYS C 528 1 14 HELIX 50 AF5 ILE C 542 ALA C 554 1 13 HELIX 51 AF6 THR D 27 GLU D 44 1 18 HELIX 52 AF7 PHE D 77 ARG D 83 1 7 HELIX 53 AF8 THR D 84 VAL D 90 1 7 HELIX 54 AF9 GLY D 99 LYS D 103 5 5 HELIX 55 AG1 GLY D 112 SER D 117 5 6 HELIX 56 AG2 PHE D 124 THR D 128 5 5 HELIX 57 AG3 SER D 134 GLU D 138 5 5 HELIX 58 AG4 LYS D 154 ASN D 175 1 22 HELIX 59 AG5 GLU D 194 ARG D 211 1 18 HELIX 60 AG6 HIS D 235 TRP D 239 5 5 HELIX 61 AG7 THR D 253 SER D 268 1 16 HELIX 62 AG8 VAL D 276 LEU D 282 1 7 HELIX 63 AG9 THR D 296 GLU D 312 1 17 HELIX 64 AH1 ASN D 363 GLY D 384 1 22 HELIX 65 AH2 GLN D 394 TRP D 402 1 9 HELIX 66 AH3 THR D 403 TRP D 406 5 4 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ARG A 143 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 THR A 131 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 LEU A 109 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 TYR A 354 0 SHEET 2 AA5 5 TRP A 337 GLU A 344 -1 N ILE A 341 O LEU A 349 SHEET 3 AA5 5 ILE A 326 LYS A 331 -1 N GLN A 330 O THR A 338 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 390 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 N LYS A 512 O THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 AA8 2 VAL B 60 ILE B 63 0 SHEET 2 AA8 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AA9 4 VAL B 179 TYR B 183 0 SHEET 2 AA9 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AA9 4 SER B 105 ASP B 110 -1 N THR B 107 O VAL B 189 SHEET 4 AA9 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB1 2 PHE B 130 ILE B 132 0 SHEET 2 AB1 2 ILE B 142 TYR B 144 -1 O TYR B 144 N PHE B 130 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 LYS B 347 ALA B 355 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N TRP B 337 O TYR B 354 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 PRO B 392 1 O LYS B 390 N ALA B 327 SHEET 5 AB3 5 TRP B 414 VAL B 417 1 O GLU B 415 N LEU B 391 SHEET 1 AB4 3 ILE C 47 LYS C 49 0 SHEET 2 AB4 3 ARG C 143 TYR C 146 -1 O GLN C 145 N SER C 48 SHEET 3 AB4 3 PHE C 130 THR C 131 -1 N PHE C 130 O TYR C 144 SHEET 1 AB5 2 VAL C 60 LYS C 64 0 SHEET 2 AB5 2 TRP C 71 VAL C 75 -1 O ARG C 72 N ILE C 63 SHEET 1 AB6 3 SER C 105 LEU C 109 0 SHEET 2 AB6 3 ASP C 186 SER C 191 -1 O VAL C 189 N THR C 107 SHEET 3 AB6 3 VAL C 179 TYR C 183 -1 N TYR C 181 O TYR C 188 SHEET 1 AB7 3 PHE C 227 TRP C 229 0 SHEET 2 AB7 3 TYR C 232 LEU C 234 -1 O TYR C 232 N TRP C 229 SHEET 3 AB7 3 TRP C 239 VAL C 241 -1 O THR C 240 N GLU C 233 SHEET 1 AB8 5 LYS C 347 TYR C 354 0 SHEET 2 AB8 5 TRP C 337 GLU C 344 -1 N ILE C 341 O LEU C 349 SHEET 3 AB8 5 ILE C 326 LYS C 331 -1 N ILE C 326 O TYR C 342 SHEET 4 AB8 5 LYS C 388 LEU C 391 1 O LYS C 390 N ALA C 327 SHEET 5 AB8 5 TRP C 414 PHE C 416 1 O GLU C 415 N PHE C 389 SHEET 1 AB9 2 HIS C 361 THR C 362 0 SHEET 2 AB9 2 LYS C 512 SER C 513 -1 N LYS C 512 O THR C 362 SHEET 1 AC1 5 GLN C 464 LEU C 469 0 SHEET 2 AC1 5 GLY C 453 THR C 459 -1 N GLY C 453 O LEU C 469 SHEET 3 AC1 5 GLU C 438 ALA C 446 -1 N TYR C 441 O VAL C 458 SHEET 4 AC1 5 GLU C 492 THR C 497 1 O ASN C 494 N PHE C 440 SHEET 5 AC1 5 LYS C 530 TRP C 535 1 O TYR C 532 N ILE C 495 SHEET 1 AC2 2 VAL D 60 LYS D 64 0 SHEET 2 AC2 2 TRP D 71 VAL D 75 -1 O ARG D 72 N ILE D 63 SHEET 1 AC3 4 VAL D 179 TYR D 183 0 SHEET 2 AC3 4 ASP D 186 SER D 191 -1 O TYR D 188 N TYR D 181 SHEET 3 AC3 4 SER D 105 ASP D 110 -1 N THR D 107 O VAL D 189 SHEET 4 AC3 4 TYR D 232 LEU D 234 -1 O LEU D 234 N VAL D 106 SHEET 1 AC4 2 PHE D 130 ILE D 132 0 SHEET 2 AC4 2 ILE D 142 TYR D 144 -1 O TYR D 144 N PHE D 130 SHEET 1 AC5 5 LYS D 347 ALA D 355 0 SHEET 2 AC5 5 GLN D 336 GLU D 344 -1 N ILE D 341 O LYS D 350 SHEET 3 AC5 5 ILE D 326 GLY D 333 -1 N GLN D 330 O THR D 338 SHEET 4 AC5 5 LYS D 388 LEU D 391 1 O LYS D 390 N ALA D 327 SHEET 5 AC5 5 TRP D 414 PHE D 416 1 O GLU D 415 N LEU D 391 LINK NZ LYS B 22 OP1 OMC E 8 1555 1555 1.35 LINK O3' DC E 5 P OMC E 6 1555 1555 1.61 LINK O3' OMC E 6 P DC E 7 1555 1555 1.61 LINK O3' DC E 7 P OMC E 8 1555 1555 1.62 LINK O3' OMC E 8 P DC E 9 1555 1555 1.61 LINK NZ LYS D 22 OP1 OMC F 8 1555 1555 1.30 LINK O3' DC F 5 P OMC F 6 1555 1555 1.60 LINK O3' OMC F 6 P DC F 7 1555 1555 1.57 LINK O3' DC F 7 P OMC F 8 1555 1555 1.61 LINK O3' OMC F 8 P DC F 9 1555 1555 1.61 LINK C1 GLC G 1 O2 FRU G 2 1555 1555 1.42 LINK C1 GLC H 1 O2 FRU H 2 1555 1555 1.43 LINK OD1 ASP A 110 MG MG A 601 1555 1555 2.15 LINK OD2 ASP A 110 MG MG A 602 1555 1555 2.03 LINK O VAL A 111 MG MG A 601 1555 1555 2.54 LINK OD2 ASP A 185 MG MG A 601 1555 1555 2.28 LINK OD1 ASP A 185 MG MG A 602 1555 1555 2.15 LINK OD2 ASP A 185 MG MG A 602 1555 1555 2.97 LINK OD1 ASP A 186 MG MG A 602 1555 1555 2.06 LINK OD1 ASP A 443 MG MG A 604 1555 1555 2.97 LINK OD2 ASP A 443 MG MG A 604 1555 1555 2.20 LINK OD2 ASP A 549 MG MG A 604 1555 1555 2.40 LINK MG MG A 601 O19 3JY A 603 1555 1555 2.36 LINK MG MG A 601 O17 3JY A 603 1555 1555 2.51 LINK MG MG A 601 O14 3JY A 603 1555 1555 2.56 LINK MG MG A 602 O14 3JY A 603 1555 1555 2.01 LINK MG MG A 602 O3' DG E 37 1555 1555 1.92 LINK MG MG A 604 O HOH A 701 1555 1555 1.87 LINK OD1 ASP C 110 MG MG C 601 1555 1555 2.74 LINK OD2 ASP C 110 MG MG C 603 1555 1555 1.80 LINK O VAL C 111 MG MG C 601 1555 1555 2.54 LINK OD2 ASP C 185 MG MG C 601 1555 1555 2.39 LINK OD1 ASP C 185 MG MG C 603 1555 1555 2.16 LINK OD2 ASP C 185 MG MG C 603 1555 1555 2.71 LINK OD1 ASP C 186 MG MG C 603 1555 1555 2.16 LINK OD1 ASP C 443 MG MG C 602 1555 1555 2.95 LINK OD2 ASP C 443 MG MG C 602 1555 1555 2.32 LINK OD2 ASP C 549 MG MG C 602 1555 1555 2.14 LINK MG MG C 601 O18 3JY C 605 1555 1555 2.46 LINK MG MG C 601 O17 3JY C 605 1555 1555 2.21 LINK MG MG C 601 O14 3JY C 605 1555 1555 2.54 LINK MG MG C 602 O HOH C 701 1555 1555 2.09 LINK MG MG C 602 O HOH C 702 1555 1555 1.94 LINK MG MG C 603 O14 3JY C 605 1555 1555 2.07 LINK MG MG C 603 O3' DG F 37 1555 1555 1.92 CISPEP 1 PRO A 225 PRO A 226 0 10.72 CISPEP 2 PRO A 420 PRO A 421 0 -1.35 CISPEP 3 PRO C 225 PRO C 226 0 9.11 CISPEP 4 PRO C 420 PRO C 421 0 -3.30 CRYST1 90.245 128.959 131.049 90.00 101.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011081 0.000000 0.002249 0.00000 SCALE2 0.000000 0.007754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007786 0.00000