HEADER HYDROLASE 24-JAN-16 5HRT TITLE CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH A DNA APTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 36-862; COMPND 6 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 7 EC: 3.1.4.39; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MODIFIED DNA (34-MER); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ENPP2, NPPS2, PDNP2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS PHOSPHOLIPASE D, DNA APTAMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KATO,H.NISHIMASU,J.MORITA,R.ISHITANI,O.NUREKI REVDAT 4 29-JUL-20 5HRT 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 19-FEB-20 5HRT 1 REMARK REVDAT 2 25-MAY-16 5HRT 1 JRNL REVDAT 1 06-APR-16 5HRT 0 JRNL AUTH K.KATO,H.IKEDA,S.MIYAKAWA,S.FUTAKAWA,Y.NONAKA,M.FUJIWARA, JRNL AUTH 2 S.OKUDAIRA,K.KANO,J.AOKI,J.MORITA,R.ISHITANI,H.NISHIMASU, JRNL AUTH 3 Y.NAKAMURA,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR SPECIFIC INHIBITION OF AUTOTAXIN BY A JRNL TITL 2 DNA APTAMER JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 395 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27043297 JRNL DOI 10.1038/NSMB.3200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 75910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1637 - 4.8113 1.00 5574 149 0.1721 0.2049 REMARK 3 2 4.8113 - 3.8195 1.00 5462 145 0.1312 0.1426 REMARK 3 3 3.8195 - 3.3369 1.00 5326 147 0.1466 0.1804 REMARK 3 4 3.3369 - 3.0319 1.00 5401 146 0.1561 0.2124 REMARK 3 5 3.0319 - 2.8146 1.00 5328 138 0.1637 0.2178 REMARK 3 6 2.8146 - 2.6487 1.00 5320 138 0.1673 0.2054 REMARK 3 7 2.6487 - 2.5160 1.00 5313 144 0.1682 0.2138 REMARK 3 8 2.5160 - 2.4065 1.00 5306 143 0.1695 0.2138 REMARK 3 9 2.4065 - 2.3139 1.00 5268 140 0.1630 0.2055 REMARK 3 10 2.3139 - 2.2340 1.00 5299 146 0.1824 0.2271 REMARK 3 11 2.2340 - 2.1642 0.99 5283 142 0.1891 0.2619 REMARK 3 12 2.1642 - 2.1023 1.00 5249 140 0.1982 0.2622 REMARK 3 13 2.1023 - 2.0470 0.99 5288 138 0.2224 0.2754 REMARK 3 14 2.0470 - 1.9970 0.86 4514 123 0.2760 0.3288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 7497 REMARK 3 ANGLE : 1.491 10353 REMARK 3 CHIRALITY : 0.094 1127 REMARK 3 PLANARITY : 0.010 1193 REMARK 3 DIHEDRAL : 15.201 4325 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2612 -10.4012 17.8816 REMARK 3 T TENSOR REMARK 3 T11: 0.6889 T22: 0.4641 REMARK 3 T33: 0.7675 T12: 0.1496 REMARK 3 T13: 0.1740 T23: 0.0735 REMARK 3 L TENSOR REMARK 3 L11: 3.3785 L22: 2.2478 REMARK 3 L33: 2.7450 L12: -0.3066 REMARK 3 L13: -0.7445 L23: -1.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.1830 S12: -0.3811 S13: 0.9001 REMARK 3 S21: 0.4884 S22: 0.4052 S23: 0.8691 REMARK 3 S31: -0.7174 S32: -0.5303 S33: -0.6087 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7390 -28.0068 10.0883 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.2312 REMARK 3 T33: 0.2493 T12: 0.0138 REMARK 3 T13: -0.0105 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.5068 L22: 1.0559 REMARK 3 L33: 0.6030 L12: 0.7062 REMARK 3 L13: -0.1461 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: -0.0882 S13: 0.2413 REMARK 3 S21: 0.0680 S22: -0.0769 S23: 0.0443 REMARK 3 S31: -0.1644 S32: 0.0209 S33: 0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5349 -33.7802 1.5251 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.2223 REMARK 3 T33: 0.2487 T12: 0.0529 REMARK 3 T13: 0.0190 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.7364 L22: 0.8470 REMARK 3 L33: 0.5663 L12: 0.8104 REMARK 3 L13: 0.4775 L23: 0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.0488 S13: 0.2086 REMARK 3 S21: -0.0485 S22: 0.0084 S23: 0.1607 REMARK 3 S31: -0.0968 S32: -0.0825 S33: 0.0527 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 591 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6825 -51.7357 7.8935 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.2308 REMARK 3 T33: 0.1700 T12: 0.0141 REMARK 3 T13: -0.0014 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6861 L22: 1.2466 REMARK 3 L33: 0.5306 L12: 0.5528 REMARK 3 L13: -0.0507 L23: -0.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.0665 S13: -0.0783 REMARK 3 S21: 0.0292 S22: -0.0621 S23: -0.0016 REMARK 3 S31: 0.0317 S32: -0.0330 S33: 0.0106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 592 THROUGH 770 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6962 -73.1521 6.4807 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1910 REMARK 3 T33: 0.1654 T12: -0.0147 REMARK 3 T13: 0.0017 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.3259 L22: 0.7692 REMARK 3 L33: 0.8426 L12: 0.2323 REMARK 3 L13: 0.0458 L23: -0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0025 S13: -0.1088 REMARK 3 S21: 0.0487 S22: -0.0017 S23: 0.0212 REMARK 3 S31: 0.1566 S32: -0.0462 S33: -0.0116 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 771 THROUGH 858 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7055 -60.3890 1.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.2208 REMARK 3 T33: 0.1783 T12: -0.0020 REMARK 3 T13: 0.0154 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.5221 L22: 1.1913 REMARK 3 L33: 1.1337 L12: 0.1925 REMARK 3 L13: 0.8431 L23: 0.2817 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: 0.2070 S13: 0.0180 REMARK 3 S21: -0.1034 S22: -0.0001 S23: -0.0724 REMARK 3 S31: -0.0080 S32: 0.1044 S33: 0.0413 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2001 THROUGH 2012 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.1546 -15.1968 -13.8603 REMARK 3 T TENSOR REMARK 3 T11: 0.7013 T22: 0.5305 REMARK 3 T33: 0.8569 T12: 0.0303 REMARK 3 T13: -0.1619 T23: 0.2408 REMARK 3 L TENSOR REMARK 3 L11: 1.3047 L22: 5.3727 REMARK 3 L33: 3.1247 L12: 0.6270 REMARK 3 L13: -0.8114 L23: -3.5990 REMARK 3 S TENSOR REMARK 3 S11: -0.3271 S12: 0.4782 S13: 1.1696 REMARK 3 S21: 0.0364 S22: 0.5223 S23: 1.2134 REMARK 3 S31: -0.9463 S32: -0.4244 S33: -0.3183 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2013 THROUGH 2031 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.4331 -16.3210 -3.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.6373 T22: 0.4364 REMARK 3 T33: 0.6285 T12: 0.2213 REMARK 3 T13: -0.0267 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 7.5111 L22: 6.9174 REMARK 3 L33: 5.6949 L12: 0.8096 REMARK 3 L13: -0.4197 L23: -1.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.5805 S13: 0.8481 REMARK 3 S21: 0.9904 S22: 0.3878 S23: 0.5785 REMARK 3 S31: -0.9479 S32: -0.9853 S33: -0.4953 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.997 REMARK 200 RESOLUTION RANGE LOW (A) : 45.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, CALCIUM CHLORIDE, TRIS, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.01800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.01800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.03100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 104.37850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.03100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 104.37850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.01800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.03100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 104.37850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.01800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.03100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 104.37850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 TRP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 TRP A 51 REMARK 465 GLU A 67 REMARK 465 VAL A 68 REMARK 465 GLY A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 ASP A 570 REMARK 465 LYS A 571 REMARK 465 ASN A 572 REMARK 465 LYS A 573 REMARK 465 LEU A 574 REMARK 465 GLU A 575 REMARK 465 GLU A 576 REMARK 465 LEU A 577 REMARK 465 ASN A 578 REMARK 465 LYS A 579 REMARK 465 ARG A 580 REMARK 465 LEU A 581 REMARK 465 HIS A 582 REMARK 465 THR A 583 REMARK 465 LYS A 584 REMARK 465 GLY A 585 REMARK 465 SER A 859 REMARK 465 ARG A 860 REMARK 465 GLU A 861 REMARK 465 ASN A 862 REMARK 465 LEU A 863 REMARK 465 TYR A 864 REMARK 465 PHE A 865 REMARK 465 GLN A 866 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 274 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 396 CG1 CG2 CD1 REMARK 470 ASN A 398 CG OD1 ND2 REMARK 470 LEU A 400 CG CD1 CD2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LYS A 405 CD CE NZ REMARK 470 ASP A 417 CG OD1 OD2 REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 ARG A 540 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 589 CG CD OE1 OE2 REMARK 470 GLU A 636 CG CD OE1 OE2 REMARK 470 GLU A 642 CG CD OE1 OE2 REMARK 470 GLU A 686 CG CD OE1 OE2 REMARK 470 GLU A 745 CG CD OE1 OE2 REMARK 470 ASP A 746 CG OD1 OD2 REMARK 470 GLN A 750 CG CD OE1 NE2 REMARK 470 GLU A 857 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1008 O HOH A 1406 2.02 REMARK 500 OE2 GLU A 546 NH1 ARG A 596 2.05 REMARK 500 OE2 GLU A 855 O HOH A 1001 2.13 REMARK 500 O HOH A 1374 O HOH A 1387 2.14 REMARK 500 NH2 ARG A 794 O HOH A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 480 CB VAL A 480 CG2 0.146 REMARK 500 DC B2012 O3' DC B2012 C3' -0.063 REMARK 500 DC B2013 O3' DC B2013 C3' -0.046 REMARK 500 DT B2027 O3' DT B2027 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 148 CA - CB - SG ANGL. DEV. = -13.4 DEGREES REMARK 500 CYS A 194 CA - CB - SG ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 549 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 596 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 743 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 743 CB - CG - OD2 ANGL. DEV. = -9.7 DEGREES REMARK 500 DT B2003 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT B2027 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 94 54.85 -118.56 REMARK 500 PRO A 157 153.82 -47.65 REMARK 500 PRO A 386 -168.26 -102.96 REMARK 500 ALA A 435 -33.44 -154.94 REMARK 500 ARG A 450 0.47 84.82 REMARK 500 ASP A 477 129.92 -34.18 REMARK 500 SER A 672 -157.73 -111.56 REMARK 500 ASN A 724 62.88 62.51 REMARK 500 ARG A 742 129.95 -39.76 REMARK 500 TRP A 810 -26.65 -155.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 917 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD2 REMARK 620 2 TYR A 665 O 66.6 REMARK 620 3 ASP A 668 O 68.1 2.4 REMARK 620 4 MET A 671 O 67.6 1.1 1.6 REMARK 620 5 HOH A1136 O 68.9 2.3 2.1 1.4 REMARK 620 6 HOH A1368 O 67.8 2.2 3.6 2.1 2.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 912 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 THR A 209 OG1 120.8 REMARK 620 3 ASP A 358 OD2 105.9 110.6 REMARK 620 4 HIS A 359 NE2 104.9 111.9 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 913 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD1 REMARK 620 2 ASP A 311 OD2 54.7 REMARK 620 3 HIS A 315 NE2 100.5 102.6 REMARK 620 4 HIS A 474 NE2 87.2 135.4 106.9 REMARK 620 5 HOH B2206 O 139.8 95.2 112.9 103.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 914 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 735 OD1 REMARK 620 2 ASN A 737 OD1 83.5 REMARK 620 3 ASN A 739 OD1 83.1 85.0 REMARK 620 4 LEU A 741 O 93.3 168.8 83.9 REMARK 620 5 HOH A1155 O 169.7 89.9 88.5 91.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 915 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 797 O REMARK 620 2 SER A 800 O 84.3 REMARK 620 3 SER A 803 OG 90.3 82.7 REMARK 620 4 HOH A1193 O 84.2 166.3 89.9 REMARK 620 5 HOH A1298 O 104.3 91.6 163.7 98.5 REMARK 620 6 HOH A1392 O 164.6 110.4 87.2 80.6 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OMG B2009 O6 REMARK 620 2 DG B2025 OP2 105.9 REMARK 620 3 HOH B2207 O 81.1 81.7 REMARK 620 4 HOH B2213 O 87.4 166.7 100.5 REMARK 620 5 HOH B2214 O 144.3 80.7 134.5 88.6 REMARK 620 6 HOH B2215 O 83.8 82.7 154.3 99.4 62.0 REMARK 620 7 HOH B2218 O 138.0 92.5 64.3 76.9 74.9 136.8 REMARK 620 N 1 2 3 4 5 6 DBREF 5HRT A 36 858 UNP Q9R1E6 ENPP2_MOUSE 36 862 DBREF 5HRT B 2001 2034 PDB 5HRT 5HRT 2001 2034 SEQADV 5HRT A UNP Q9R1E6 LYS 571 DELETION SEQADV 5HRT A UNP Q9R1E6 VAL 572 DELETION SEQADV 5HRT A UNP Q9R1E6 GLU 573 DELETION SEQADV 5HRT A UNP Q9R1E6 PRO 574 DELETION SEQADV 5HRT SER A 859 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT ARG A 860 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT GLU A 861 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT ASN A 862 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT LEU A 863 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT TYR A 864 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT PHE A 865 UNP Q9R1E6 EXPRESSION TAG SEQADV 5HRT GLN A 866 UNP Q9R1E6 EXPRESSION TAG SEQRES 1 A 831 ALA GLU TRP ASP GLU GLY PRO PRO THR VAL LEU SER ASP SEQRES 2 A 831 SER PRO TRP THR ASN THR SER GLY SER CYS LYS GLY ARG SEQRES 3 A 831 CYS PHE GLU LEU GLN GLU VAL GLY PRO PRO ASP CYS ARG SEQRES 4 A 831 CYS ASP ASN LEU CYS LYS SER TYR SER SER CYS CYS HIS SEQRES 5 A 831 ASP PHE ASP GLU LEU CYS LEU LYS THR ALA ARG GLY TRP SEQRES 6 A 831 GLU CYS THR LYS ASP ARG CYS GLY GLU VAL ARG ASN GLU SEQRES 7 A 831 GLU ASN ALA CYS HIS CYS SER GLU ASP CYS LEU SER ARG SEQRES 8 A 831 GLY ASP CYS CYS THR ASN TYR GLN VAL VAL CYS LYS GLY SEQRES 9 A 831 GLU SER HIS TRP VAL ASP ASP ASP CYS GLU GLU ILE ARG SEQRES 10 A 831 VAL PRO GLU CYS PRO ALA GLY PHE VAL ARG PRO PRO LEU SEQRES 11 A 831 ILE ILE PHE SER VAL ASP GLY PHE ARG ALA SER TYR MET SEQRES 12 A 831 LYS LYS GLY SER LYS VAL MET PRO ASN ILE GLU LYS LEU SEQRES 13 A 831 ARG SER CYS GLY THR HIS ALA PRO TYR MET ARG PRO VAL SEQRES 14 A 831 TYR PRO THR LYS THR PHE PRO ASN LEU TYR THR LEU ALA SEQRES 15 A 831 THR GLY LEU TYR PRO GLU SER HIS GLY ILE VAL GLY ASN SEQRES 16 A 831 SER MET TYR ASP PRO VAL PHE ASP ALA THR PHE HIS LEU SEQRES 17 A 831 ARG GLY ARG GLU LYS PHE ASN HIS ARG TRP TRP GLY GLY SEQRES 18 A 831 GLN PRO LEU TRP ILE THR ALA THR LYS GLN GLY VAL ARG SEQRES 19 A 831 ALA GLY THR PHE PHE TRP SER VAL SER ILE PRO HIS GLU SEQRES 20 A 831 ARG ARG ILE LEU THR ILE LEU GLN TRP LEU SER LEU PRO SEQRES 21 A 831 ASP ASN GLU ARG PRO SER VAL TYR ALA PHE TYR SER GLU SEQRES 22 A 831 GLN PRO ASP PHE SER GLY HIS LYS TYR GLY PRO PHE GLY SEQRES 23 A 831 PRO GLU MET THR ASN PRO LEU ARG GLU ILE ASP LYS THR SEQRES 24 A 831 VAL GLY GLN LEU MET ASP GLY LEU LYS GLN LEU LYS LEU SEQRES 25 A 831 HIS ARG CYS VAL ASN VAL ILE PHE VAL GLY ASP HIS GLY SEQRES 26 A 831 MET GLU ASP VAL THR CYS ASP ARG THR GLU PHE LEU SER SEQRES 27 A 831 ASN TYR LEU THR ASN VAL ASP ASP ILE THR LEU VAL PRO SEQRES 28 A 831 GLY THR LEU GLY ARG ILE ARG PRO LYS ILE PRO ASN ASN SEQRES 29 A 831 LEU LYS TYR ASP PRO LYS ALA ILE ILE ALA ASN LEU THR SEQRES 30 A 831 CYS LYS LYS PRO ASP GLN HIS PHE LYS PRO TYR MET LYS SEQRES 31 A 831 GLN HIS LEU PRO LYS ARG LEU HIS TYR ALA ASN ASN ARG SEQRES 32 A 831 ARG ILE GLU ASP LEU HIS LEU LEU VAL GLU ARG ARG TRP SEQRES 33 A 831 HIS VAL ALA ARG LYS PRO LEU ASP VAL TYR LYS LYS PRO SEQRES 34 A 831 SER GLY LYS CYS PHE PHE GLN GLY ASP HIS GLY PHE ASP SEQRES 35 A 831 ASN LYS VAL ASN SER MET GLN THR VAL PHE VAL GLY TYR SEQRES 36 A 831 GLY PRO THR PHE LYS TYR ARG THR LYS VAL PRO PRO PHE SEQRES 37 A 831 GLU ASN ILE GLU LEU TYR ASN VAL MET CYS ASP LEU LEU SEQRES 38 A 831 GLY LEU LYS PRO ALA PRO ASN ASN GLY THR HIS GLY SER SEQRES 39 A 831 LEU ASN HIS LEU LEU ARG THR ASN THR PHE ARG PRO THR SEQRES 40 A 831 LEU PRO GLU GLU VAL SER ARG PRO ASN TYR PRO GLY ILE SEQRES 41 A 831 MET TYR LEU GLN SER ASP PHE ASP LEU GLY CYS THR CYS SEQRES 42 A 831 ASP ASP LYS ASN LYS LEU GLU GLU LEU ASN LYS ARG LEU SEQRES 43 A 831 HIS THR LYS GLY SER THR GLU GLU ARG HIS LEU LEU TYR SEQRES 44 A 831 GLY ARG PRO ALA VAL LEU TYR ARG THR SER TYR ASP ILE SEQRES 45 A 831 LEU TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU ILE SEQRES 46 A 831 PHE LEU MET PRO LEU TRP THR SER TYR THR ILE SER LYS SEQRES 47 A 831 GLN ALA GLU VAL SER SER ILE PRO GLU HIS LEU THR ASN SEQRES 48 A 831 CYS VAL ARG PRO ASP VAL ARG VAL SER PRO GLY PHE SER SEQRES 49 A 831 GLN ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SER SEQRES 50 A 831 TYR GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER PRO SEQRES 51 A 831 GLU ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET VAL SEQRES 52 A 831 PRO MET TYR PRO ALA PHE LYS ARG VAL TRP THR TYR PHE SEQRES 53 A 831 GLN ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG ASN SEQRES 54 A 831 GLY VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR ASN SEQRES 55 A 831 TYR ASN GLY LEU ARG ASP ILE GLU ASP GLU ILE LYS GLN SEQRES 56 A 831 TYR VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS TYR SEQRES 57 A 831 TYR SER ILE ILE THR SER CYS LEU ASP PHE THR GLN PRO SEQRES 58 A 831 ALA ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER PHE SEQRES 59 A 831 ILE LEU PRO HIS ARG PRO ASP ASN ASP GLU SER CYS ASN SEQRES 60 A 831 SER SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU MET SEQRES 61 A 831 LYS MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS LEU SEQRES 62 A 831 THR GLY LEU ASP PHE TYR ARG LYS THR SER ARG SER TYR SEQRES 63 A 831 SER GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR TYR SEQRES 64 A 831 GLU SER GLU ILE SER ARG GLU ASN LEU TYR PHE GLN SEQRES 1 B 34 DC DC DT DG DG DA OMC DG OMG DA DA DC DC SEQRES 2 B 34 A2M OMG DA DA DT A2M OMC DT DT DT DT DG DG SEQRES 3 B 34 DT DC DT DC DC A2M OMG OMG HET OMC B2007 21 HET OMG B2009 24 HET A2M B2014 23 HET OMG B2015 24 HET A2M B2019 23 HET OMC B2020 21 HET A2M B2032 23 HET OMG B2033 24 HET OMG B2034 24 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN C 7 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET ZN A 912 1 HET ZN A 913 1 HET CA A 914 1 HET NA A 915 1 HET CL A 916 1 HET K A 917 1 HET GOL A 918 6 HET GOL A 919 6 HET GOL A 920 6 HET GOL A 921 6 HET GOL A 922 6 HET GOL A 923 6 HET GOL A 924 6 HET GOL A 925 6 HET GOL A 926 6 HET GOL A 927 6 HET CA B2101 1 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM A2M 2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 OMC 2(C10 H16 N3 O8 P) FORMUL 2 OMG 4(C11 H16 N5 O8 P) FORMUL 2 A2M 3(C11 H16 N5 O7 P) FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 CA 2(CA 2+) FORMUL 8 NA NA 1+ FORMUL 9 CL CL 1- FORMUL 10 K K 1+ FORMUL 11 GOL 10(C3 H8 O3) FORMUL 22 HOH *459(H2 O) HELIX 1 AA1 LEU A 78 SER A 83 1 6 HELIX 2 AA2 ASP A 88 LEU A 94 1 7 HELIX 3 AA3 THR A 103 CYS A 107 5 5 HELIX 4 AA4 ASP A 122 GLY A 127 1 6 HELIX 5 AA5 ASN A 132 GLY A 139 1 8 HELIX 6 AA6 HIS A 142 ASP A 146 5 5 HELIX 7 AA7 ARG A 174 LYS A 179 5 6 HELIX 8 AA8 LYS A 180 MET A 185 1 6 HELIX 9 AA9 MET A 185 GLY A 195 1 11 HELIX 10 AB1 LYS A 208 GLY A 219 1 12 HELIX 11 AB2 TYR A 221 GLY A 226 1 6 HELIX 12 AB3 ARG A 246 TRP A 254 5 9 HELIX 13 AB4 PRO A 258 GLN A 266 1 9 HELIX 14 AB5 PRO A 280 SER A 293 1 14 HELIX 15 AB6 ASP A 311 GLY A 318 1 8 HELIX 16 AB7 GLY A 321 GLU A 323 5 3 HELIX 17 AB8 MET A 324 LEU A 345 1 22 HELIX 18 AB9 SER A 373 TYR A 375 5 3 HELIX 19 AC1 ASN A 378 ASP A 380 5 3 HELIX 20 AC2 ASP A 403 LEU A 411 1 9 HELIX 21 AC3 GLN A 426 LEU A 428 5 3 HELIX 22 AC4 PRO A 429 HIS A 433 5 5 HELIX 23 AC5 VAL A 480 GLN A 484 5 5 HELIX 24 AC6 GLU A 507 LEU A 516 1 10 HELIX 25 AC7 LEU A 530 LEU A 534 5 5 HELIX 26 AC8 LEU A 558 PHE A 562 5 5 HELIX 27 AC9 THR A 587 LEU A 592 1 6 HELIX 28 AD1 PRO A 641 THR A 645 5 5 HELIX 29 AD2 SER A 655 SER A 659 5 5 HELIX 30 AD3 ASN A 661 ASP A 668 1 8 HELIX 31 AD4 PRO A 678 SER A 682 5 5 HELIX 32 AD5 SER A 684 PHE A 692 1 9 HELIX 33 AD6 LEU A 693 THR A 695 5 3 HELIX 34 AD7 TYR A 701 VAL A 714 1 14 HELIX 35 AD8 VAL A 714 ASN A 724 1 11 HELIX 36 AD9 PRO A 776 CYS A 780 5 5 HELIX 37 AE1 ASP A 806 LYS A 809 5 4 HELIX 38 AE2 TRP A 810 HIS A 818 1 9 HELIX 39 AE3 ARG A 821 GLY A 830 1 10 HELIX 40 AE4 SER A 840 TYR A 850 1 11 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N ILE A 167 O PHE A 305 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA1 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 6 VAL A 302 PRO A 310 0 SHEET 2 AA2 6 LEU A 165 ASP A 171 1 N ILE A 167 O PHE A 305 SHEET 3 AA2 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA2 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA2 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA2 6 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O ALA A 239 N ASP A 234 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O ALA A 454 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 PRO A 394 -1 O ARG A 393 N THR A 383 SHEET 3 AA6 4 LEU A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 598 VAL A 599 0 SHEET 2 AA7 2 LEU A 831 ASP A 832 -1 O ASP A 832 N ALA A 598 SHEET 1 AA8 7 TYR A 605 TYR A 609 0 SHEET 2 AA8 7 GLU A 614 SER A 618 -1 O TYR A 617 N ASP A 606 SHEET 3 AA8 7 PRO A 624 ILE A 631 -1 O SER A 628 N GLU A 614 SHEET 4 AA8 7 VAL A 726 ILE A 733 -1 O VAL A 728 N TYR A 629 SHEET 5 AA8 7 HIS A 762 CYS A 770 -1 O THR A 768 N ASN A 727 SHEET 6 AA8 7 LEU A 784 PRO A 792 -1 O SER A 787 N ILE A 767 SHEET 7 AA8 7 THR A 819 ALA A 820 -1 O ALA A 820 N SER A 788 SHEET 1 AA9 2 SER A 672 PHE A 675 0 SHEET 2 AA9 2 MET A 697 MET A 700 -1 O VAL A 698 N GLY A 674 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.05 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.04 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.09 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.07 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.07 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.07 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.11 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.09 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.00 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.07 SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.08 SSBOND 12 CYS A 413 CYS A 801 1555 1555 2.09 SSBOND 13 CYS A 566 CYS A 662 1555 1555 2.12 SSBOND 14 CYS A 568 CYS A 647 1555 1555 2.06 SSBOND 15 CYS A 770 CYS A 780 1555 1555 2.14 LINK ND2 ASN A 410 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN A 524 C1 NAG C 1 1555 1555 1.45 LINK O3' DA B2006 P OMC B2007 1555 1555 1.61 LINK O3' OMC B2007 P DG B2008 1555 1555 1.63 LINK O3' DG B2008 P OMG B2009 1555 1555 1.60 LINK O3' OMG B2009 P DA B2010 1555 1555 1.61 LINK O3' DC B2013 P A2M B2014 1555 1555 1.59 LINK O3' A2M B2014 P OMG B2015 1555 1555 1.62 LINK O3' OMG B2015 P DA B2016 1555 1555 1.59 LINK O3' DT B2018 P A2M B2019 1555 1555 1.61 LINK O3' A2M B2019 P OMC B2020 1555 1555 1.61 LINK O3' OMC B2020 P DT B2021 1555 1555 1.61 LINK O3' DC B2031 P A2M B2032 1555 1555 1.62 LINK O3' A2M B2032 P OMG B2033 1555 1555 1.61 LINK O3' OMG B2033 P OMG B2034 1555 1555 1.61 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.43 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.46 LINK O2 MAN C 5 C1 MAN C 6 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.47 LINK OD2 ASP A 147 K K A 917 1555 8545 2.34 LINK OD1 ASP A 171 ZN ZN A 912 1555 1555 1.87 LINK OG1 THR A 209 ZN ZN A 912 1555 1555 1.97 LINK OD1 ASP A 311 ZN ZN A 913 1555 1555 2.61 LINK OD2 ASP A 311 ZN ZN A 913 1555 1555 2.03 LINK NE2 HIS A 315 ZN ZN A 913 1555 1555 1.99 LINK OD2 ASP A 358 ZN ZN A 912 1555 1555 2.08 LINK NE2 HIS A 359 ZN ZN A 912 1555 1555 2.08 LINK NE2 HIS A 474 ZN ZN A 913 1555 1555 2.11 LINK O TYR A 665 K K A 917 1555 1555 2.34 LINK O ASP A 668 K K A 917 1555 1555 2.36 LINK O MET A 671 K K A 917 1555 1555 2.42 LINK OD1 ASP A 735 CA CA A 914 1555 1555 2.29 LINK OD1 ASN A 737 CA CA A 914 1555 1555 2.35 LINK OD1 ASN A 739 CA CA A 914 1555 1555 2.42 LINK O LEU A 741 CA CA A 914 1555 1555 2.29 LINK O ASN A 797 NA NA A 915 1555 1555 2.37 LINK O SER A 800 NA NA A 915 1555 1555 2.35 LINK OG SER A 803 NA NA A 915 1555 1555 2.45 LINK ZN ZN A 913 O HOH B2206 1555 1555 1.98 LINK CA CA A 914 O HOH A1155 1555 1555 2.43 LINK NA NA A 915 O HOH A1193 1555 1555 2.73 LINK NA NA A 915 O HOH A1298 1555 1555 2.27 LINK NA NA A 915 O HOH A1392 1555 1555 2.61 LINK K K A 917 O HOH A1136 1555 8445 2.42 LINK K K A 917 O HOH A1368 1555 1555 2.40 LINK O6 OMG B2009 CA CA B2101 1555 1555 2.48 LINK OP2 DG B2025 CA CA B2101 1555 1555 2.28 LINK CA CA B2101 O HOH B2207 1555 1555 2.45 LINK CA CA B2101 O HOH B2213 1555 1555 2.27 LINK CA CA B2101 O HOH B2214 1555 1555 2.55 LINK CA CA B2101 O HOH B2215 1555 1555 2.50 LINK CA CA B2101 O HOH B2218 1555 1555 2.66 CISPEP 1 TYR A 205 PRO A 206 0 -4.45 CISPEP 2 GLN A 309 PRO A 310 0 14.55 CISPEP 3 GLN A 309 PRO A 310 0 -0.39 CRYST1 120.062 208.757 90.036 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011107 0.00000