HEADER TRANSFERASE 26-JAN-16 5HTC TITLE CRYSTAL STRUCTURE OF HASPIN (GSG2) IN COMPLEX WITH BISUBSTRATE TITLE 2 INHIBITOR ARC-3372 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HASPIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERM CELL-SPECIFIC GENE 2 PROTEIN,H-HASPIN,HAPLOID GERM COMPND 5 CELL-SPECIFIC NUCLEAR PROTEIN KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: KINASE DOMAIN (465-798); COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ARC-3372 INHIBITOR; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE, KINASE, INHIBITOR, ALLOSTERIC, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM (SGC), TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX, KEYWDS 3 BISUBSTRATE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,C.HEROVEN,D.LAVOGINA,K.KESTAV,A.URI,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 07-FEB-24 5HTC 1 REMARK REVDAT 4 24-JAN-18 5HTC 1 SOURCE REVDAT 3 11-MAY-16 5HTC 1 JRNL REVDAT 2 04-MAY-16 5HTC 1 JRNL REVDAT 1 16-MAR-16 5HTC 0 JRNL AUTH D.LAVOGINA,K.KESTAV,A.CHAIKUAD,C.HEROVEN,S.KNAPP,A.URI JRNL TITL CO-CRYSTAL STRUCTURES OF THE PROTEIN KINASE HASPIN WITH JRNL TITL 2 BISUBSTRATE INHIBITORS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 339 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27139824 JRNL DOI 10.1107/S2053230X16004611 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 75949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3678 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2683 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3020 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2908 ; 0.003 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4108 ; 1.628 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6736 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.416 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.918 ;24.733 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;11.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3518 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 692 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 0.776 ; 1.022 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1359 ; 0.764 ; 1.020 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1709 ; 1.227 ; 1.531 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1710 ; 1.227 ; 1.531 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1660 ; 1.516 ; 1.388 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1661 ; 1.516 ; 1.392 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2382 ; 2.438 ; 2.001 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3664 ; 7.017 ;10.890 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3665 ; 7.016 ;10.903 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 471 A 798 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9649 25.5653 8.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.0108 T22: 0.0134 REMARK 3 T33: 0.0076 T12: 0.0101 REMARK 3 T13: 0.0035 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.2354 L22: 1.5428 REMARK 3 L33: 0.9946 L12: 0.5400 REMARK 3 L13: 0.3448 L23: 0.4452 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.0028 S13: 0.0479 REMARK 3 S21: -0.0110 S22: 0.0177 S23: 0.0013 REMARK 3 S31: -0.0237 S32: -0.0500 S33: -0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79693 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 52-60% MPD AND 0.1 M SPG PH 6.5-7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 SER A 449 REMARK 465 SER A 450 REMARK 465 GLY A 451 REMARK 465 VAL A 452 REMARK 465 ASP A 453 REMARK 465 LEU A 454 REMARK 465 GLY A 455 REMARK 465 THR A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 LEU A 459 REMARK 465 TYR A 460 REMARK 465 PHE A 461 REMARK 465 GLN A 462 REMARK 465 SER A 463 REMARK 465 MET A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 CYS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 465 LYS A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 2 NE ARG C 2 CZ 0.105 REMARK 500 ARG C 2 NE ARG C 2 CZ 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 519 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 519 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG C 2 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG C 2 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 2 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 516 -6.62 78.78 REMARK 500 PHE A 556 -146.82 -90.69 REMARK 500 ASP A 649 46.55 -154.84 REMARK 500 LEU A 650 53.64 -90.58 REMARK 500 ASP A 687 95.44 74.88 REMARK 500 ASP A 687 95.32 74.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 803 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 554 O REMARK 620 2 PHE A 556 O 91.3 REMARK 620 3 SER A 684 OG 149.2 87.3 REMARK 620 4 HOH A 906 O 69.8 84.5 140.4 REMARK 620 5 HOH A 938 O 69.1 132.1 89.3 124.0 REMARK 620 6 HOH A1159 O 106.2 159.5 82.9 91.6 66.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 66M C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 66N C 7 bound to THR C 6 DBREF 5HTC A 465 798 UNP Q8TF76 HASP_HUMAN 465 798 DBREF 5HTC C 1 7 PDB 5HTC 5HTC 1 7 SEQADV 5HTC MET A 442 UNP Q8TF76 INITIATING METHIONINE SEQADV 5HTC HIS A 443 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC HIS A 444 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC HIS A 445 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC HIS A 446 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC HIS A 447 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC HIS A 448 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC SER A 449 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC SER A 450 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC GLY A 451 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC VAL A 452 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC ASP A 453 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC LEU A 454 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC GLY A 455 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC THR A 456 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC GLU A 457 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC ASN A 458 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC LEU A 459 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC TYR A 460 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC PHE A 461 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC GLN A 462 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC SER A 463 UNP Q8TF76 EXPRESSION TAG SEQADV 5HTC MET A 464 UNP Q8TF76 EXPRESSION TAG SEQRES 1 A 357 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 357 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU CYS SEQRES 3 A 357 SER GLN LYS GLY PRO VAL PRO PHE SER HIS CYS LEU PRO SEQRES 4 A 357 THR GLU LYS LEU GLN ARG CYS GLU LYS ILE GLY GLU GLY SEQRES 5 A 357 VAL PHE GLY GLU VAL PHE GLN THR ILE ALA ASP HIS THR SEQRES 6 A 357 PRO VAL ALA ILE LYS ILE ILE ALA ILE GLU GLY PRO ASP SEQRES 7 A 357 LEU VAL ASN GLY SER HIS GLN LYS THR PHE GLU GLU ILE SEQRES 8 A 357 LEU PRO GLU ILE ILE ILE SER LYS GLU LEU SER LEU LEU SEQRES 9 A 357 SER GLY GLU VAL CYS ASN ARG THR GLU GLY PHE ILE GLY SEQRES 10 A 357 LEU ASN SER VAL HIS CYS VAL GLN GLY SER TYR PRO PRO SEQRES 11 A 357 LEU LEU LEU LYS ALA TRP ASP HIS TYR ASN SER THR LYS SEQRES 12 A 357 GLY SER ALA ASN ASP ARG PRO ASP PHE PHE LYS ASP ASP SEQRES 13 A 357 GLN LEU PHE ILE VAL LEU GLU PHE GLU PHE GLY GLY ILE SEQRES 14 A 357 ASP LEU GLU GLN MET ARG THR LYS LEU SER SER LEU ALA SEQRES 15 A 357 THR ALA LYS SER ILE LEU HIS GLN LEU THR ALA SER LEU SEQRES 16 A 357 ALA VAL ALA GLU ALA SER LEU ARG PHE GLU HIS ARG ASP SEQRES 17 A 357 LEU HIS TRP GLY ASN VAL LEU LEU LYS LYS THR SER LEU SEQRES 18 A 357 LYS LYS LEU HIS TYR THR LEU ASN GLY LYS SER SER THR SEQRES 19 A 357 ILE PRO SER CYS GLY LEU GLN VAL SER ILE ILE ASP TYR SEQRES 20 A 357 THR LEU SER ARG LEU GLU ARG ASP GLY ILE VAL VAL PHE SEQRES 21 A 357 CYS ASP VAL SER MET ASP GLU ASP LEU PHE THR GLY ASP SEQRES 22 A 357 GLY ASP TYR GLN PHE ASP ILE TYR ARG LEU MET LYS LYS SEQRES 23 A 357 GLU ASN ASN ASN ARG TRP GLY GLU TYR HIS PRO TYR SER SEQRES 24 A 357 ASN VAL LEU TRP LEU HIS TYR LEU THR ASP LYS MET LEU SEQRES 25 A 357 LYS GLN MET THR PHE LYS THR LYS CYS ASN THR PRO ALA SEQRES 26 A 357 MET LYS GLN ILE LYS ARG LYS ILE GLN GLU PHE HIS ARG SEQRES 27 A 357 THR MET LEU ASN PHE SER SER ALA THR ASP LEU LEU CYS SEQRES 28 A 357 GLN HIS SER LEU PHE LYS SEQRES 1 C 7 ALA ARG LYS LYS GLN THR 66N HET 66N C 7 12 HET MPD A 801 8 HET MPD A 802 8 HET NA A 803 1 HET DMS A 804 4 HET 66M C 101 70 HETNAM 66N L-ALANINAMIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NA SODIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 66M (2R)-2-{[6-({[(2S,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)- HETNAM 2 66M 3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]CARBONYL}AMINO) HETNAM 3 66M HEXANOYL]AMINO}BUTANEDIOIC ACID (NON-PREFERRED NAME) FORMUL 2 66N C3 H8 N2 O FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 NA NA 1+ FORMUL 6 DMS C2 H6 O S FORMUL 7 66M C20 H27 N7 O9 FORMUL 8 HOH *404(H2 O) HELIX 1 AA1 PRO A 474 LEU A 479 1 6 HELIX 2 AA2 PRO A 480 ARG A 486 1 7 HELIX 3 AA3 THR A 528 LEU A 545 1 18 HELIX 4 AA4 SER A 546 GLU A 548 5 3 HELIX 5 AA5 PRO A 570 LYS A 584 1 15 HELIX 6 AA6 SER A 621 ARG A 644 1 24 HELIX 7 AA7 ASP A 716 ASN A 730 1 15 HELIX 8 AA8 PRO A 738 GLN A 755 1 18 HELIX 9 AA9 THR A 764 MET A 781 1 18 HELIX 10 AB1 LEU A 782 PHE A 784 5 3 HELIX 11 AB2 SER A 786 HIS A 794 1 9 HELIX 12 AB3 SER A 795 LYS A 798 5 4 SHEET 1 AA1 5 GLU A 488 GLY A 493 0 SHEET 2 AA1 5 GLY A 496 ALA A 503 -1 O GLN A 500 N GLU A 488 SHEET 3 AA1 5 THR A 506 ILE A 515 -1 O ILE A 510 N PHE A 499 SHEET 4 AA1 5 LEU A 599 GLU A 606 -1 O PHE A 605 N ALA A 509 SHEET 5 AA1 5 LEU A 559 GLN A 566 -1 N SER A 561 O GLU A 604 SHEET 1 AA2 2 LEU A 520 VAL A 521 0 SHEET 2 AA2 2 SER A 524 HIS A 525 -1 O SER A 524 N VAL A 521 SHEET 1 AA3 3 ILE A 610 ASP A 611 0 SHEET 2 AA3 3 VAL A 655 LYS A 659 -1 O LEU A 657 N ILE A 610 SHEET 3 AA3 3 LEU A 681 ILE A 685 -1 O SER A 684 N LEU A 656 SHEET 1 AA4 2 LYS A 664 LEU A 669 0 SHEET 2 AA4 2 LYS A 672 PRO A 677 -1 O ILE A 676 N LEU A 665 SHEET 1 AA5 2 LEU A 693 ARG A 695 0 SHEET 2 AA5 2 ILE A 698 VAL A 700 -1 O VAL A 700 N LEU A 693 LINK NZ ALYS C 3 C18A66M C 101 1555 1555 1.33 LINK NZ BLYS C 3 C18B66M C 101 1555 1555 1.33 LINK C ATHR C 6 N11A66N C 7 1555 1555 1.34 LINK C BTHR C 6 N11B66N C 7 1555 1555 1.33 LINK O GLU A 554 NA NA A 803 1555 1555 2.37 LINK O BPHE A 556 NA NA A 803 1555 1555 2.40 LINK OG SER A 684 NA NA A 803 1555 1555 2.47 LINK NA NA A 803 O HOH A 906 1555 1555 2.26 LINK NA NA A 803 O HOH A 938 1555 1555 2.33 LINK NA NA A 803 O HOH A1159 1555 1555 2.40 SITE 1 AC1 5 GLU A 728 TYR A 739 LEU A 782 ASN A 783 SITE 2 AC1 5 PHE A 784 SITE 1 AC2 4 PRO A 571 ARG A 695 ILE A 698 HOH A1118 SITE 1 AC3 6 GLU A 554 PHE A 556 SER A 684 HOH A 906 SITE 2 AC3 6 HOH A 938 HOH A1159 SITE 1 AC4 4 TYR A 667 LYS A 672 SER A 674 HOH A 910 SITE 1 AC5 32 ILE A 490 GLY A 491 GLU A 492 GLY A 493 SITE 2 AC5 32 VAL A 494 PHE A 495 GLY A 496 ALA A 509 SITE 3 AC5 32 ILE A 557 GLU A 606 PHE A 607 GLY A 608 SITE 4 AC5 32 GLY A 609 ASP A 611 GLY A 653 LEU A 656 SITE 5 AC5 32 ILE A 686 ASP A 687 THR A 689 HOH A 933 SITE 6 AC5 32 HOH A 935 HOH A 937 HOH A 940 HOH A1053 SITE 7 AC5 32 ARG C 2 LYS C 3 HOH C 202 HOH C 203 SITE 8 AC5 32 HOH C 206 HOH C 211 HOH C 212 HOH C 215 SITE 1 AC6 2 GLN C 5 THR C 6 CRYST1 77.970 78.903 81.060 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012337 0.00000