HEADER TRANSFERASE 27-JAN-16 5HUC TITLE DAHP SYNTHASE FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE (DAHP) COMPND 3 SYNTHASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DAHP SYNTHASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 GENE: CGL2178; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: KA13 KEYWDS DAHP SYNTHASE, SHIKIMATE PATHWAY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BURSCHOWSKY,J.B.HEIM,H.V.THORBJOERNSRUD,U.KRENGEL REVDAT 5 10-JAN-24 5HUC 1 REMARK REVDAT 4 11-JUL-18 5HUC 1 JRNL REVDAT 3 31-JAN-18 5HUC 1 JRNL REVDAT 2 20-DEC-17 5HUC 1 JRNL REVDAT 1 02-AUG-17 5HUC 0 JRNL AUTH D.BURSCHOWSKY,H.V.THORBJORNSRUD,J.B.HEIM, JRNL AUTH 2 J.R.FAHRIG-KAMARAUSKAITE,K.WURTH-RODERER,P.KAST,U.KRENGEL JRNL TITL INTER-ENZYME ALLOSTERIC REGULATION OF CHORISMATE MUTASE IN JRNL TITL 2 CORYNEBACTERIUM GLUTAMICUM: STRUCTURAL BASIS OF FEEDBACK JRNL TITL 3 ACTIVATION BY TRP. JRNL REF BIOCHEMISTRY V. 57 557 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29178787 JRNL DOI 10.1021/ACS.BIOCHEM.7B01018 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 34813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1884 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.5120 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.5340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.85000 REMARK 3 B22 (A**2) : 3.85000 REMARK 3 B33 (A**2) : -12.48000 REMARK 3 B12 (A**2) : 1.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3611 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3394 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4899 ; 1.177 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7791 ; 0.907 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 5.822 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;36.245 ;24.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 587 ;16.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;11.068 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4139 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1803 ; 3.651 ;11.188 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1802 ; 3.648 ;11.186 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2252 ; 5.976 ;16.776 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2253 ; 5.976 ;16.779 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 3.161 ;11.417 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1800 ; 3.160 ;11.431 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2636 ; 5.285 ;17.076 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3916 ; 8.835 ;86.960 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3917 ; 8.835 ;86.976 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 95.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.86 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.46 REMARK 200 R MERGE FOR SHELL (I) : 2.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2B7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/BICINE BUFFER 13% MPD 13% REMARK 280 PEG 1000 13% PEG 3350 2% TRIETHYLENE GLYCOL 200 UM PEP 100 UM REMARK 280 MNCL2, PH 8.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 186.20267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.10133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 186.20267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.10133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 186.20267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.10133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 186.20267 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.10133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -253.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.92200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.12769 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -93.10133 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 54.92200 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 95.12769 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -93.10133 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 MET A 11 REMARK 465 SER A 12 REMARK 465 TRP A 13 REMARK 465 THR A 14 REMARK 465 VAL A 15 REMARK 465 ASP A 16 REMARK 465 ILE A 17 REMARK 465 PRO A 18 REMARK 465 LYS A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 147 OG SER A 147 11555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 25 -48.99 176.54 REMARK 500 ARG A 145 99.88 -62.18 REMARK 500 GLU A 166 120.99 -37.98 REMARK 500 ALA A 220 53.84 -99.34 REMARK 500 ASP A 245 76.70 -64.39 REMARK 500 LEU A 260 -53.97 -133.62 REMARK 500 ASP A 334 70.07 -118.17 REMARK 500 CYS A 450 -95.24 -142.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 HIS A 379 NE2 170.6 REMARK 620 3 GLU A 421 OE1 91.1 91.6 REMARK 620 4 GLU A 421 OE2 94.7 94.2 53.8 REMARK 620 5 ASP A 451 OD2 77.8 103.0 155.2 104.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRP A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 508 DBREF 5HUC A 11 472 UNP Q8NNL5 Q8NNL5_CORGL 1 462 SEQADV 5HUC MET A 1 UNP Q8NNL5 INITIATING METHIONINE SEQADV 5HUC HIS A 2 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC HIS A 3 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC HIS A 4 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC HIS A 5 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC HIS A 6 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC HIS A 7 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC SER A 8 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC SER A 9 UNP Q8NNL5 EXPRESSION TAG SEQADV 5HUC GLY A 10 UNP Q8NNL5 EXPRESSION TAG SEQRES 1 A 472 MET HIS HIS HIS HIS HIS HIS SER SER GLY MET SER TRP SEQRES 2 A 472 THR VAL ASP ILE PRO LYS GLU VAL LEU PRO ASP LEU PRO SEQRES 3 A 472 PRO LEU PRO GLU GLY MET GLN GLN GLN PHE GLU ASP THR SEQRES 4 A 472 ILE SER ARG ASP ALA LYS GLN GLN PRO THR TRP ASP ARG SEQRES 5 A 472 ALA GLN ALA GLU ASN VAL ARG LYS ILE LEU GLU SER VAL SEQRES 6 A 472 PRO PRO ILE VAL VAL ALA PRO GLU VAL LEU GLU LEU LYS SEQRES 7 A 472 GLN LYS LEU ALA ASP VAL ALA ASN GLY LYS ALA PHE LEU SEQRES 8 A 472 LEU GLN GLY GLY ASP CYS ALA GLU THR PHE GLU SER ASN SEQRES 9 A 472 THR GLU PRO HIS ILE ARG ALA ASN VAL LYS THR LEU LEU SEQRES 10 A 472 GLN MET ALA VAL VAL LEU THR TYR GLY ALA SER THR PRO SEQRES 11 A 472 VAL ILE LYS MET ALA ARG ILE ALA GLY GLN TYR ALA LYS SEQRES 12 A 472 PRO ARG SER SER ASP LEU ASP GLY ASN GLY LEU PRO ASN SEQRES 13 A 472 TYR ARG GLY ASP ILE VAL ASN GLY VAL GLU ALA THR PRO SEQRES 14 A 472 GLU ALA ARG ARG HIS ASP PRO ALA ARG MET ILE ARG ALA SEQRES 15 A 472 TYR ALA ASN ALA SER ALA ALA MET ASN LEU VAL ARG ALA SEQRES 16 A 472 LEU THR SER SER GLY THR ALA ASP LEU TYR ARG LEU SER SEQRES 17 A 472 GLU TRP ASN ARG GLU PHE VAL ALA ASN SER PRO ALA GLY SEQRES 18 A 472 ALA ARG TYR GLU ALA LEU ALA ARG GLU ILE ASP SER GLY SEQRES 19 A 472 LEU ARG PHE MET GLU ALA CYS GLY VAL SER ASP GLU SER SEQRES 20 A 472 LEU ARG ALA ALA ASP ILE TYR CYS SER HIS GLU ALA LEU SEQRES 21 A 472 LEU VAL ASP TYR GLU ARG SER MET LEU ARG LEU ALA THR SEQRES 22 A 472 ASP GLU GLU GLY ASN GLU GLU LEU TYR ASP LEU SER ALA SEQRES 23 A 472 HIS GLN LEU TRP ILE GLY GLU ARG THR ARG GLY MET ASP SEQRES 24 A 472 ASP PHE HIS VAL ASN PHE ALA SER MET ILE SER ASN PRO SEQRES 25 A 472 ILE GLY ILE LYS ILE GLY PRO GLY ILE THR PRO GLU GLU SEQRES 26 A 472 ALA VAL ALA TYR ALA ASP LYS LEU ASP PRO ASN PHE GLU SEQRES 27 A 472 PRO GLY ARG LEU THR ILE VAL ALA ARG MET GLY HIS ASP SEQRES 28 A 472 LYS VAL ARG SER VAL LEU PRO GLY VAL ILE GLN ALA VAL SEQRES 29 A 472 GLU ALA SER GLY HIS LYS VAL ILE TRP GLN SER ASP PRO SEQRES 30 A 472 MET HIS GLY ASN THR PHE THR ALA SER ASN GLY TYR LYS SEQRES 31 A 472 THR ARG HIS PHE ASP LYS VAL ILE ASP GLU VAL GLN GLY SEQRES 32 A 472 PHE PHE GLU VAL HIS ARG ALA LEU GLY THR HIS PRO GLY SEQRES 33 A 472 GLY ILE HIS ILE GLU PHE THR GLY GLU ASP VAL THR GLU SEQRES 34 A 472 CYS LEU GLY GLY ALA GLU ASP ILE THR ASP VAL ASP LEU SEQRES 35 A 472 PRO GLY ARG TYR GLU SER ALA CYS ASP PRO ARG LEU ASN SEQRES 36 A 472 THR GLN GLN SER LEU GLU LEU ALA PHE LEU VAL ALA GLU SEQRES 37 A 472 MET LEU ARG ASN HET MN A 501 1 HET PEP A 502 10 HET MPD A 503 8 HET MPD A 504 8 HET MPD A 505 8 HET TRP A 506 15 HET PO4 A 507 5 HET PO4 A 508 5 HETNAM MN MANGANESE (II) ION HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM TRP TRYPTOPHAN HETNAM PO4 PHOSPHATE ION FORMUL 2 MN MN 2+ FORMUL 3 PEP C3 H5 O6 P FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 TRP C11 H12 N2 O2 FORMUL 8 PO4 2(O4 P 3-) FORMUL 10 HOH *21(H2 O) HELIX 1 AA1 PRO A 29 SER A 41 1 13 HELIX 2 AA2 ASP A 51 GLU A 63 1 13 HELIX 3 AA3 VAL A 70 ASN A 86 1 17 HELIX 4 AA4 THR A 105 SER A 128 1 24 HELIX 5 AA5 ASP A 150 LEU A 154 5 5 HELIX 6 AA6 PRO A 176 SER A 199 1 24 HELIX 7 AA7 ASP A 203 SER A 218 1 16 HELIX 8 AA8 TYR A 224 CYS A 241 1 18 HELIX 9 AA9 LEU A 261 MET A 268 1 8 HELIX 10 AB1 ASP A 300 ILE A 309 1 10 HELIX 11 AB2 THR A 322 ASP A 334 1 13 HELIX 12 AB3 ASP A 351 SER A 367 1 17 HELIX 13 AB4 HIS A 393 GLY A 412 1 20 HELIX 14 AB5 THR A 438 ARG A 445 5 8 HELIX 15 AB6 ASN A 455 ASN A 472 1 18 SHEET 1 AA1 9 PHE A 90 GLY A 95 0 SHEET 2 AA1 9 VAL A 131 ARG A 136 1 O ILE A 132 N PHE A 90 SHEET 3 AA1 9 ILE A 253 GLU A 258 1 O TYR A 254 N LYS A 133 SHEET 4 AA1 9 GLN A 288 ILE A 291 1 O GLN A 288 N CYS A 255 SHEET 5 AA1 9 ILE A 313 ILE A 317 1 O LYS A 316 N ILE A 291 SHEET 6 AA1 9 LEU A 342 ALA A 346 1 O VAL A 345 N ILE A 317 SHEET 7 AA1 9 ILE A 372 SER A 375 1 O GLN A 374 N ALA A 346 SHEET 8 AA1 9 PRO A 415 GLU A 421 1 O GLY A 417 N SER A 375 SHEET 9 AA1 9 PHE A 90 GLY A 95 1 N LEU A 91 O GLY A 416 SHEET 1 AA2 2 LEU A 269 THR A 273 0 SHEET 2 AA2 2 GLU A 279 ASP A 283 -1 O TYR A 282 N ARG A 270 SHEET 1 AA3 2 PHE A 383 THR A 384 0 SHEET 2 AA3 2 LYS A 390 THR A 391 -1 O THR A 391 N PHE A 383 LINK SG CYS A 97 MN MN A 501 1555 1555 2.31 LINK NE2 HIS A 379 MN MN A 501 1555 1555 1.98 LINK OE1 GLU A 421 MN MN A 501 1555 1555 2.66 LINK OE2 GLU A 421 MN MN A 501 1555 1555 1.91 LINK OD2 ASP A 451 MN MN A 501 1555 1555 1.88 SITE 1 AC1 5 CYS A 97 HIS A 379 GLU A 421 ASP A 451 SITE 2 AC1 5 PEP A 502 SITE 1 AC2 11 ARG A 136 GLU A 258 TRP A 290 GLY A 292 SITE 2 AC2 11 GLU A 293 ARG A 294 LYS A 316 ARG A 347 SITE 3 AC2 11 HIS A 379 MN A 501 HOH A 611 SITE 1 AC3 2 ILE A 180 ASN A 185 SITE 1 AC4 5 GLU A 73 ARG A 194 THR A 197 ASP A 252 SITE 2 AC4 5 ILE A 253 SITE 1 AC5 8 ALA A 120 VAL A 121 THR A 124 LYS A 133 SITE 2 AC5 8 ALA A 202 CYS A 241 SER A 247 ALA A 250 SITE 1 AC6 4 PRO A 335 ASN A 336 GLU A 338 ARG A 341 SITE 1 AC7 6 ILE A 40 SER A 41 ARG A 42 ASP A 43 SITE 2 AC7 6 ALA A 44 HOH A 615 CRYST1 109.844 109.844 279.304 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009104 0.005256 0.000000 0.00000 SCALE2 0.000000 0.010512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003580 0.00000 TER 3484 ASN A 472 HETATM 3485 MN MN A 501 8.173 32.865 -12.913 0.55 93.72 MN HETATM 3486 C1 PEP A 502 6.517 36.395 -13.082 1.00116.75 C HETATM 3487 O1 PEP A 502 7.028 36.625 -14.200 1.00118.00 O HETATM 3488 O2' PEP A 502 7.023 35.567 -12.280 1.00110.39 O HETATM 3489 C2 PEP A 502 5.295 37.121 -12.725 1.00113.19 C HETATM 3490 C3 PEP A 502 5.320 38.439 -12.688 1.00111.27 C HETATM 3491 O2 PEP A 502 4.075 36.393 -12.402 1.00108.58 O HETATM 3492 P PEP A 502 2.693 36.523 -13.227 0.90 98.78 P HETATM 3493 O1P PEP A 502 3.016 36.114 -14.637 1.00 97.05 O HETATM 3494 O2P PEP A 502 1.837 35.512 -12.510 1.00 98.81 O HETATM 3495 O3P PEP A 502 2.243 37.961 -13.084 1.00 87.79 O HETATM 3496 C1 MPD A 503 -9.947 33.426 -43.518 1.00152.10 C HETATM 3497 C2 MPD A 503 -9.247 33.617 -42.175 1.00153.13 C HETATM 3498 O2 MPD A 503 -10.158 33.308 -41.117 1.00148.83 O HETATM 3499 CM MPD A 503 -8.072 32.650 -42.068 1.00150.66 C HETATM 3500 C3 MPD A 503 -8.756 35.060 -41.995 1.00153.14 C HETATM 3501 C4 MPD A 503 -9.868 36.108 -41.865 1.00151.02 C HETATM 3502 O4 MPD A 503 -10.618 35.909 -40.660 1.00143.78 O HETATM 3503 C5 MPD A 503 -9.289 37.521 -41.855 1.00147.70 C HETATM 3504 C1 MPD A 504 27.371 44.343 -4.267 1.00100.51 C HETATM 3505 C2 MPD A 504 27.747 42.969 -4.813 1.00102.64 C HETATM 3506 O2 MPD A 504 27.549 42.970 -6.231 1.00 93.52 O HETATM 3507 CM MPD A 504 29.219 42.685 -4.543 1.00103.26 C HETATM 3508 C3 MPD A 504 26.840 41.935 -4.137 1.00104.47 C HETATM 3509 C4 MPD A 504 26.990 40.473 -4.593 1.00108.81 C HETATM 3510 O4 MPD A 504 27.631 40.339 -5.873 1.00101.60 O HETATM 3511 C5 MPD A 504 27.752 39.636 -3.566 1.00113.55 C HETATM 3512 C1 MPD A 505 19.606 46.140 -26.895 1.00134.84 C HETATM 3513 C2 MPD A 505 20.818 47.033 -27.129 1.00134.68 C HETATM 3514 O2 MPD A 505 21.283 46.887 -28.470 1.00139.42 O HETATM 3515 CM MPD A 505 20.389 48.487 -26.993 1.00132.07 C HETATM 3516 C3 MPD A 505 21.948 46.715 -26.132 1.00136.61 C HETATM 3517 C4 MPD A 505 22.837 45.476 -26.386 1.00135.76 C HETATM 3518 O4 MPD A 505 22.080 44.264 -26.514 1.00128.86 O HETATM 3519 C5 MPD A 505 23.762 45.624 -27.596 1.00138.61 C HETATM 3520 N TRP A 506 21.232 41.571 -36.037 1.00146.82 N HETATM 3521 CA TRP A 506 20.056 40.928 -36.705 1.00148.61 C HETATM 3522 C TRP A 506 18.854 40.822 -35.759 1.00154.49 C HETATM 3523 O TRP A 506 17.749 40.461 -36.175 1.00154.36 O HETATM 3524 CB TRP A 506 20.432 39.541 -37.252 1.00143.50 C HETATM 3525 CG TRP A 506 20.872 38.568 -36.200 1.00138.21 C HETATM 3526 CD1 TRP A 506 22.132 38.415 -35.700 1.00138.78 C HETATM 3527 CD2 TRP A 506 20.050 37.617 -35.515 1.00135.68 C HETATM 3528 NE1 TRP A 506 22.148 37.427 -34.745 1.00137.83 N HETATM 3529 CE2 TRP A 506 20.882 36.920 -34.611 1.00134.51 C HETATM 3530 CE3 TRP A 506 18.689 37.287 -35.575 1.00133.96 C HETATM 3531 CZ2 TRP A 506 20.400 35.911 -33.775 1.00131.48 C HETATM 3532 CZ3 TRP A 506 18.209 36.282 -34.743 1.00130.55 C HETATM 3533 CH2 TRP A 506 19.065 35.607 -33.854 1.00131.83 C HETATM 3534 OXT TRP A 506 18.953 41.093 -34.558 1.00158.32 O HETATM 3535 P PO4 A 507 2.404 57.975 -22.768 0.11 87.43 P HETATM 3536 O1 PO4 A 507 3.000 58.529 -24.043 1.00 87.14 O HETATM 3537 O2 PO4 A 507 0.938 58.323 -22.676 1.00 90.18 O HETATM 3538 O3 PO4 A 507 2.538 56.472 -22.773 1.00 91.63 O HETATM 3539 O4 PO4 A 507 3.128 58.561 -21.580 1.00 79.72 O HETATM 3540 P PO4 A 508 2.579 52.939 -1.185 0.03 68.59 P HETATM 3541 O1 PO4 A 508 2.853 52.986 -2.663 1.00 68.30 O HETATM 3542 O2 PO4 A 508 1.535 53.960 -0.815 1.00 70.89 O HETATM 3543 O3 PO4 A 508 2.056 51.580 -0.792 1.00 68.30 O HETATM 3544 O4 PO4 A 508 3.887 53.241 -0.500 1.00 67.43 O HETATM 3545 O HOH A 601 17.181 47.403 -13.133 1.00 67.11 O HETATM 3546 O HOH A 602 21.247 41.123 -12.983 1.00 98.38 O HETATM 3547 O HOH A 603 16.501 28.540 -46.499 0.50111.03 O HETATM 3548 O HOH A 604 -2.465 50.660 -30.647 1.00 88.59 O HETATM 3549 O HOH A 605 15.773 36.947 -6.408 1.00 94.10 O HETATM 3550 O HOH A 606 23.295 59.878 -13.280 1.00 93.66 O HETATM 3551 O HOH A 607 15.827 44.596 -16.280 1.00 81.05 O HETATM 3552 O HOH A 608 -1.609 48.200 -10.225 1.00 68.47 O HETATM 3553 O HOH A 609 8.154 38.514 -11.005 1.00 84.96 O HETATM 3554 O HOH A 610 30.471 43.951 -15.779 1.00 71.05 O HETATM 3555 O HOH A 611 2.114 38.276 -10.359 1.00 89.96 O HETATM 3556 O HOH A 612 -1.028 32.127 -23.740 1.00 95.01 O HETATM 3557 O HOH A 613 5.441 33.031 -10.116 1.00 80.20 O HETATM 3558 O HOH A 614 -0.250 48.947 -28.016 1.00 95.01 O HETATM 3559 O HOH A 615 0.000 56.354 0.000 0.50120.33 O HETATM 3560 O HOH A 616 11.226 41.889 -10.658 1.00 83.89 O HETATM 3561 O HOH A 617 2.810 40.871 -9.093 1.00 90.26 O HETATM 3562 O HOH A 618 -0.968 46.581 -7.356 1.00125.86 O HETATM 3563 O HOH A 619 29.783 46.754 -26.085 1.00 82.76 O HETATM 3564 O HOH A 620 26.938 46.513 -27.402 1.00 93.52 O HETATM 3565 O HOH A 621 22.961 45.325 -34.734 1.00 84.94 O CONECT 574 3485 CONECT 2760 3485 CONECT 3091 3485 CONECT 3092 3485 CONECT 3312 3485 CONECT 3485 574 2760 3091 3092 CONECT 3485 3312 CONECT 3486 3487 3488 3489 CONECT 3487 3486 CONECT 3488 3486 CONECT 3489 3486 3490 3491 CONECT 3490 3489 CONECT 3491 3489 3492 CONECT 3492 3491 3493 3494 3495 CONECT 3493 3492 CONECT 3494 3492 CONECT 3495 3492 CONECT 3496 3497 CONECT 3497 3496 3498 3499 3500 CONECT 3498 3497 CONECT 3499 3497 CONECT 3500 3497 3501 CONECT 3501 3500 3502 3503 CONECT 3502 3501 CONECT 3503 3501 CONECT 3504 3505 CONECT 3505 3504 3506 3507 3508 CONECT 3506 3505 CONECT 3507 3505 CONECT 3508 3505 3509 CONECT 3509 3508 3510 3511 CONECT 3510 3509 CONECT 3511 3509 CONECT 3512 3513 CONECT 3513 3512 3514 3515 3516 CONECT 3514 3513 CONECT 3515 3513 CONECT 3516 3513 3517 CONECT 3517 3516 3518 3519 CONECT 3518 3517 CONECT 3519 3517 CONECT 3535 3536 3537 3538 3539 CONECT 3536 3535 CONECT 3537 3535 CONECT 3538 3535 CONECT 3539 3535 CONECT 3540 3541 3542 3543 3544 CONECT 3541 3540 CONECT 3542 3540 CONECT 3543 3540 CONECT 3544 3540 MASTER 407 0 8 15 13 0 13 6 3553 1 51 37 END