HEADER TRANSFERASE 27-JAN-16 5HUV TITLE STRUCTURE OF CANDIDA ALBICANS TREHALOSE-6-PHOSPHATE SYNTHASE TITLE 2 E341R/E346R IN COMPLEX WITH UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TREHALOSE-6-PHOSPHATE SYNTHASE,UDP-GLUCOSE-GLUCOSEPHOSPHATE COMPND 5 GLUCOSYLTRANSFERASE; COMPND 6 EC: 2.4.1.15; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: TPS1, CAO19.13961, CAO19.6640; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TREHALOSE-6-PHOSPHATE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MIAO,R.G.BRENNAN REVDAT 5 03-APR-24 5HUV 1 REMARK REVDAT 4 06-MAR-24 5HUV 1 REMARK REVDAT 3 11-DEC-19 5HUV 1 SEQADV REVDAT 2 20-SEP-17 5HUV 1 REMARK REVDAT 1 03-MAY-17 5HUV 0 JRNL AUTH Y.MIAO,R.G.BRENNAN JRNL TITL STRUCTURE OF CANDIDA ALBICANS TREHALOSE-6-PHOSPHATE SYNTHASE JRNL TITL 2 E341R/E346R IN COMPLEX WITH UDP-GLUCOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 68938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3079 - 4.8180 0.97 4833 148 0.1391 0.1393 REMARK 3 2 4.8180 - 3.8280 0.97 4771 145 0.1150 0.1417 REMARK 3 3 3.8280 - 3.3452 0.97 4788 148 0.1287 0.1682 REMARK 3 4 3.3452 - 3.0398 0.97 4773 147 0.1453 0.1734 REMARK 3 5 3.0398 - 2.8222 0.97 4768 139 0.1524 0.1990 REMARK 3 6 2.8222 - 2.6560 0.97 4785 137 0.1595 0.2024 REMARK 3 7 2.6560 - 2.5231 0.97 4757 145 0.1508 0.1686 REMARK 3 8 2.5231 - 2.4133 0.97 4765 147 0.1606 0.1932 REMARK 3 9 2.4133 - 2.3205 0.97 4755 147 0.1589 0.1737 REMARK 3 10 2.3205 - 2.2405 0.97 4753 139 0.1596 0.2039 REMARK 3 11 2.2405 - 2.1704 0.97 4788 144 0.1632 0.1966 REMARK 3 12 2.1704 - 2.1084 0.97 4716 142 0.1685 0.1951 REMARK 3 13 2.1084 - 2.0529 0.97 4788 143 0.1739 0.2000 REMARK 3 14 2.0529 - 2.0029 0.97 4791 146 0.1800 0.2218 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.2700 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7770 REMARK 3 ANGLE : 1.107 10534 REMARK 3 CHIRALITY : 0.045 1166 REMARK 3 PLANARITY : 0.005 1326 REMARK 3 DIHEDRAL : 12.146 2860 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CANDIDA ALBICANS TPS1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS, 40% REMARK 280 PEG 400, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.19733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.39467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.19733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 124.39467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 888 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 473 REMARK 465 LYS A 474 REMARK 465 SER A 475 REMARK 465 LEU A 476 REMARK 465 ARG A 477 REMARK 465 ASP A 478 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 20 REMARK 465 ASP B 21 REMARK 465 ASN B 22 REMARK 465 GLY B 32 REMARK 465 GLY B 33 REMARK 465 GLN B 473 REMARK 465 LYS B 474 REMARK 465 SER B 475 REMARK 465 LEU B 476 REMARK 465 ARG B 477 REMARK 465 ASP B 478 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 27 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 791 O HOH A 921 1.81 REMARK 500 O HOH A 652 O HOH B 850 1.82 REMARK 500 O HOH B 955 O HOH B 956 1.86 REMARK 500 O HOH A 691 O HOH A 870 1.88 REMARK 500 O HOH A 739 O HOH A 915 1.89 REMARK 500 O HOH A 826 O HOH A 862 1.89 REMARK 500 O HOH A 691 O HOH A 878 1.89 REMARK 500 OE1 GLU A 128 O HOH A 601 1.90 REMARK 500 O HIS A 88 O HOH A 602 1.90 REMARK 500 O SER A 234 O HOH A 603 1.90 REMARK 500 O HOH B 941 O HOH B 978 1.91 REMARK 500 O HOH B 896 O HOH B 944 1.91 REMARK 500 O GLY B 23 O HOH B 601 1.93 REMARK 500 O HOH B 890 O HOH B 895 1.94 REMARK 500 NZ LYS B 273 O HOH B 602 1.94 REMARK 500 O SER A 369 O HOH A 604 1.95 REMARK 500 O HOH B 898 O HOH B 958 1.95 REMARK 500 O HOH B 827 O HOH B 904 1.96 REMARK 500 O HOH B 614 O HOH B 673 1.96 REMARK 500 O HOH A 782 O HOH A 906 1.98 REMARK 500 O HOH B 742 O HOH B 953 1.99 REMARK 500 O HOH A 654 O HOH A 922 1.99 REMARK 500 OE1 GLU B 295 O HOH B 603 1.99 REMARK 500 O HOH B 787 O HOH B 906 1.99 REMARK 500 O HOH B 690 O HOH B 823 2.00 REMARK 500 OG1 THR B 223 O HOH B 604 2.00 REMARK 500 O HOH B 817 O HOH B 935 2.00 REMARK 500 O HOH B 619 O HOH B 896 2.00 REMARK 500 O ASP A 394 O HOH A 605 2.02 REMARK 500 OD2 ASP B 82 O HOH B 605 2.03 REMARK 500 O HOH A 912 O HOH A 931 2.03 REMARK 500 NZ LYS A 42 O HOH A 606 2.04 REMARK 500 OG SER A 456 O HOH A 607 2.04 REMARK 500 OD1 ASP B 205 NH1 ARG B 208 2.04 REMARK 500 O HOH A 804 O HOH A 878 2.05 REMARK 500 O HOH B 895 O HOH B 935 2.07 REMARK 500 OE1 GLU A 322 O HOH A 608 2.08 REMARK 500 O LEU B 467 O HOH B 606 2.08 REMARK 500 NH2 ARG A 19 OE2 GLU A 61 2.09 REMARK 500 O HOH A 601 O HOH A 838 2.09 REMARK 500 OE1 GLU B 128 O HOH B 607 2.09 REMARK 500 O HOH B 834 O HOH B 895 2.10 REMARK 500 N GLY A 232 O HOH A 609 2.10 REMARK 500 O HOH B 834 O HOH B 890 2.10 REMARK 500 O HOH A 826 O HOH A 834 2.10 REMARK 500 N GLY A 106 O HOH A 610 2.10 REMARK 500 O HOH B 904 O HOH B 910 2.12 REMARK 500 O HOH A 654 O HOH A 815 2.12 REMARK 500 O HOH B 709 O HOH B 728 2.12 REMARK 500 O HOH B 630 O HOH B 718 2.12 REMARK 500 REMARK 500 THIS ENTRY HAS 67 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 461 NZ LYS A 469 4695 2.08 REMARK 500 O HOH A 891 O HOH B 757 47105 2.14 REMARK 500 OD1 ASP A 256 N GLY B 23 5365 2.18 REMARK 500 O HOH A 643 O HOH B 654 5465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 31.42 -78.07 REMARK 500 LEU A 41 -40.19 -162.06 REMARK 500 ILE A 96 -61.28 -123.51 REMARK 500 HIS A 104 63.66 -119.45 REMARK 500 ASP A 143 174.18 75.75 REMARK 500 MET A 381 -63.53 -124.15 REMARK 500 ASN A 382 111.51 86.21 REMARK 500 PRO B 14 25.55 -79.17 REMARK 500 LEU B 41 -42.64 -157.48 REMARK 500 TYR B 89 -72.60 -73.62 REMARK 500 ILE B 96 -60.97 -126.47 REMARK 500 ASP B 143 171.81 76.98 REMARK 500 MET B 381 -63.73 -122.82 REMARK 500 ASN B 382 112.17 86.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 42 LYS A 43 149.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 954 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 980 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 981 DISTANCE = 8.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UPG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UPG B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HUS RELATED DB: PDB REMARK 900 RELATED ID: 5HUT RELATED DB: PDB REMARK 900 RELATED ID: 5HUU RELATED DB: PDB DBREF 5HUV A 1 478 UNP Q92410 TPS1_CANAL 1 478 DBREF 5HUV B 1 478 UNP Q92410 TPS1_CANAL 1 478 SEQADV 5HUV ARG A 341 UNP Q92410 GLU 341 ENGINEERED MUTATION SEQADV 5HUV ARG A 346 UNP Q92410 GLU 346 ENGINEERED MUTATION SEQADV 5HUV ARG B 341 UNP Q92410 GLU 341 ENGINEERED MUTATION SEQADV 5HUV ARG B 346 UNP Q92410 GLU 346 ENGINEERED MUTATION SEQRES 1 A 478 MET VAL GLN GLY LYS VAL LEU VAL VAL SER ASN ARG ILE SEQRES 2 A 478 PRO VAL THR ILE LYS ARG LEU ASP ASN GLY SER TYR ASP SEQRES 3 A 478 TYR SER MET SER SER GLY GLY LEU VAL THR ALA LEU GLN SEQRES 4 A 478 GLY LEU LYS LYS THR THR GLU PHE GLN TRP TYR GLY TRP SEQRES 5 A 478 PRO GLY LEU GLU ILE PRO GLU ASP GLU GLN THR LYS VAL SEQRES 6 A 478 ASN ASP GLU LEU LYS SER LYS PHE ASN CYS THR ALA ILE SEQRES 7 A 478 PHE LEU SER ASP THR ILE ALA ASP LEU HIS TYR ASN GLY SEQRES 8 A 478 PHE SER ASN SER ILE LEU TRP PRO LEU PHE HIS TYR HIS SEQRES 9 A 478 PRO GLY GLU MET ASN PHE ASP GLU ASN ALA TRP ALA ALA SEQRES 10 A 478 TYR ILE GLU ALA ASN LYS LYS PHE ALA LEU GLU ILE VAL SEQRES 11 A 478 LYS GLN VAL ASN ASP ASP ASP MET ILE TRP VAL HIS ASP SEQRES 12 A 478 TYR HIS LEU MET LEU LEU PRO GLU MET LEU ARG GLN GLU SEQRES 13 A 478 ILE GLY ASN LYS LYS LYS ASN ILE LYS ILE GLY PHE PHE SEQRES 14 A 478 LEU HIS THR PRO PHE PRO SER SER GLU ILE TYR ARG ILE SEQRES 15 A 478 LEU PRO VAL ARG LYS GLU ILE LEU GLU GLY VAL LEU SER SEQRES 16 A 478 CYS ASP LEU ILE GLY PHE HIS THR TYR ASP TYR ALA ARG SEQRES 17 A 478 HIS PHE ILE SER SER VAL SER ARG ILE VAL PRO ASN VAL SEQRES 18 A 478 SER THR LEU PRO ASN GLY ILE LYS TYR GLN GLY ARG SER SEQRES 19 A 478 ILE SER ILE GLY ALA PHE PRO ILE GLY ILE ASP VAL ASP SEQRES 20 A 478 ASN PHE ILE ASP GLY LEU LYS LYS ASP SER VAL VAL GLU SEQRES 21 A 478 ARG ILE LYS GLN LEU LYS SER LYS PHE LYS ASP VAL LYS SEQRES 22 A 478 VAL ILE VAL GLY VAL ASP ARG LEU ASP TYR ILE LYS GLY SEQRES 23 A 478 VAL PRO GLN LYS LEU HIS ALA PHE GLU VAL PHE LEU ASN SEQRES 24 A 478 GLU ASN PRO GLU TRP ILE GLY LYS VAL VAL LEU VAL GLN SEQRES 25 A 478 VAL ALA VAL PRO SER ARG GLY ASP VAL GLU GLU TYR GLN SEQRES 26 A 478 SER LEU ARG SER THR VAL SER GLU LEU VAL GLY ARG ILE SEQRES 27 A 478 ASN GLY ARG PHE GLY THR VAL ARG PHE VAL PRO ILE HIS SEQRES 28 A 478 TYR LEU HIS LYS SER ILE PRO PHE ASP GLU LEU ILE SER SEQRES 29 A 478 LEU TYR ASN ILE SER ASP VAL CYS LEU VAL SER SER THR SEQRES 30 A 478 ARG ASP GLY MET ASN LEU VAL SER TYR GLU TYR ILE ALA SEQRES 31 A 478 CYS GLN GLN ASP ARG LYS GLY VAL LEU ILE LEU SER GLU SEQRES 32 A 478 PHE ALA GLY ALA ALA GLN SER LEU ASN GLY ALA LEU ILE SEQRES 33 A 478 VAL ASN PRO TRP ASN THR GLU ASP LEU SER GLU ALA ILE SEQRES 34 A 478 LYS GLU SER LEU THR LEU PRO GLU GLU LYS ARG GLU PHE SEQRES 35 A 478 ASN PHE LYS LYS LEU PHE THR TYR ILE SER LYS TYR THR SEQRES 36 A 478 SER GLY PHE TRP GLY GLU SER PHE VAL LYS GLU LEU TYR SEQRES 37 A 478 LYS CYS ASN PRO GLN LYS SER LEU ARG ASP SEQRES 1 B 478 MET VAL GLN GLY LYS VAL LEU VAL VAL SER ASN ARG ILE SEQRES 2 B 478 PRO VAL THR ILE LYS ARG LEU ASP ASN GLY SER TYR ASP SEQRES 3 B 478 TYR SER MET SER SER GLY GLY LEU VAL THR ALA LEU GLN SEQRES 4 B 478 GLY LEU LYS LYS THR THR GLU PHE GLN TRP TYR GLY TRP SEQRES 5 B 478 PRO GLY LEU GLU ILE PRO GLU ASP GLU GLN THR LYS VAL SEQRES 6 B 478 ASN ASP GLU LEU LYS SER LYS PHE ASN CYS THR ALA ILE SEQRES 7 B 478 PHE LEU SER ASP THR ILE ALA ASP LEU HIS TYR ASN GLY SEQRES 8 B 478 PHE SER ASN SER ILE LEU TRP PRO LEU PHE HIS TYR HIS SEQRES 9 B 478 PRO GLY GLU MET ASN PHE ASP GLU ASN ALA TRP ALA ALA SEQRES 10 B 478 TYR ILE GLU ALA ASN LYS LYS PHE ALA LEU GLU ILE VAL SEQRES 11 B 478 LYS GLN VAL ASN ASP ASP ASP MET ILE TRP VAL HIS ASP SEQRES 12 B 478 TYR HIS LEU MET LEU LEU PRO GLU MET LEU ARG GLN GLU SEQRES 13 B 478 ILE GLY ASN LYS LYS LYS ASN ILE LYS ILE GLY PHE PHE SEQRES 14 B 478 LEU HIS THR PRO PHE PRO SER SER GLU ILE TYR ARG ILE SEQRES 15 B 478 LEU PRO VAL ARG LYS GLU ILE LEU GLU GLY VAL LEU SER SEQRES 16 B 478 CYS ASP LEU ILE GLY PHE HIS THR TYR ASP TYR ALA ARG SEQRES 17 B 478 HIS PHE ILE SER SER VAL SER ARG ILE VAL PRO ASN VAL SEQRES 18 B 478 SER THR LEU PRO ASN GLY ILE LYS TYR GLN GLY ARG SER SEQRES 19 B 478 ILE SER ILE GLY ALA PHE PRO ILE GLY ILE ASP VAL ASP SEQRES 20 B 478 ASN PHE ILE ASP GLY LEU LYS LYS ASP SER VAL VAL GLU SEQRES 21 B 478 ARG ILE LYS GLN LEU LYS SER LYS PHE LYS ASP VAL LYS SEQRES 22 B 478 VAL ILE VAL GLY VAL ASP ARG LEU ASP TYR ILE LYS GLY SEQRES 23 B 478 VAL PRO GLN LYS LEU HIS ALA PHE GLU VAL PHE LEU ASN SEQRES 24 B 478 GLU ASN PRO GLU TRP ILE GLY LYS VAL VAL LEU VAL GLN SEQRES 25 B 478 VAL ALA VAL PRO SER ARG GLY ASP VAL GLU GLU TYR GLN SEQRES 26 B 478 SER LEU ARG SER THR VAL SER GLU LEU VAL GLY ARG ILE SEQRES 27 B 478 ASN GLY ARG PHE GLY THR VAL ARG PHE VAL PRO ILE HIS SEQRES 28 B 478 TYR LEU HIS LYS SER ILE PRO PHE ASP GLU LEU ILE SER SEQRES 29 B 478 LEU TYR ASN ILE SER ASP VAL CYS LEU VAL SER SER THR SEQRES 30 B 478 ARG ASP GLY MET ASN LEU VAL SER TYR GLU TYR ILE ALA SEQRES 31 B 478 CYS GLN GLN ASP ARG LYS GLY VAL LEU ILE LEU SER GLU SEQRES 32 B 478 PHE ALA GLY ALA ALA GLN SER LEU ASN GLY ALA LEU ILE SEQRES 33 B 478 VAL ASN PRO TRP ASN THR GLU ASP LEU SER GLU ALA ILE SEQRES 34 B 478 LYS GLU SER LEU THR LEU PRO GLU GLU LYS ARG GLU PHE SEQRES 35 B 478 ASN PHE LYS LYS LEU PHE THR TYR ILE SER LYS TYR THR SEQRES 36 B 478 SER GLY PHE TRP GLY GLU SER PHE VAL LYS GLU LEU TYR SEQRES 37 B 478 LYS CYS ASN PRO GLN LYS SER LEU ARG ASP HET UPG A 501 58 HET UPG B 501 58 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 UPG 2(C15 H24 N2 O17 P2) FORMUL 5 HOH *735(H2 O) HELIX 1 AA1 GLY A 32 LEU A 38 1 7 HELIX 2 AA2 LEU A 38 LYS A 43 1 6 HELIX 3 AA3 PRO A 58 ASN A 74 1 17 HELIX 4 AA4 SER A 81 ASN A 90 1 10 HELIX 5 AA5 ILE A 96 HIS A 102 1 7 HELIX 6 AA6 TYR A 103 MET A 108 5 6 HELIX 7 AA7 ASP A 111 VAL A 133 1 23 HELIX 8 AA8 TYR A 144 MET A 147 5 4 HELIX 9 AA9 LEU A 148 GLY A 158 1 11 HELIX 10 AB1 SER A 176 ARG A 181 1 6 HELIX 11 AB2 VAL A 185 LEU A 194 1 10 HELIX 12 AB3 THR A 203 VAL A 218 1 16 HELIX 13 AB4 ASP A 245 LEU A 253 1 9 HELIX 14 AB5 LYS A 255 PHE A 269 1 15 HELIX 15 AB6 ASP A 282 LYS A 285 5 4 HELIX 16 AB7 GLY A 286 ASN A 301 1 16 HELIX 17 AB8 PRO A 302 ILE A 305 5 4 HELIX 18 AB9 VAL A 321 GLY A 343 1 23 HELIX 19 AC1 PRO A 358 SER A 369 1 12 HELIX 20 AC2 LEU A 383 CYS A 391 1 9 HELIX 21 AC3 ALA A 405 SER A 410 5 6 HELIX 22 AC4 ASN A 421 LEU A 435 1 15 HELIX 23 AC5 PRO A 436 TYR A 454 1 19 HELIX 24 AC6 THR A 455 LYS A 469 1 15 HELIX 25 AC7 LEU B 34 GLN B 39 5 6 HELIX 26 AC8 PRO B 58 ASN B 74 1 17 HELIX 27 AC9 SER B 81 ASN B 90 1 10 HELIX 28 AD1 ILE B 96 HIS B 102 1 7 HELIX 29 AD2 HIS B 104 MET B 108 5 5 HELIX 30 AD3 ASP B 111 LYS B 131 1 21 HELIX 31 AD4 TYR B 144 MET B 147 5 4 HELIX 32 AD5 LEU B 148 GLY B 158 1 11 HELIX 33 AD6 SER B 176 ARG B 181 1 6 HELIX 34 AD7 VAL B 185 LEU B 194 1 10 HELIX 35 AD8 THR B 203 VAL B 218 1 16 HELIX 36 AD9 ASP B 245 LEU B 253 1 9 HELIX 37 AE1 LYS B 255 PHE B 269 1 15 HELIX 38 AE2 ASP B 282 LYS B 285 5 4 HELIX 39 AE3 GLY B 286 ASN B 301 1 16 HELIX 40 AE4 PRO B 302 ILE B 305 5 4 HELIX 41 AE5 VAL B 321 GLY B 343 1 23 HELIX 42 AE6 PRO B 358 SER B 369 1 12 HELIX 43 AE7 LEU B 383 CYS B 391 1 9 HELIX 44 AE8 ALA B 405 SER B 410 5 6 HELIX 45 AE9 ASN B 421 LEU B 435 1 15 HELIX 46 AF1 PRO B 436 TYR B 454 1 19 HELIX 47 AF2 THR B 455 LYS B 469 1 15 SHEET 1 AA1 9 CYS A 75 ALA A 77 0 SHEET 2 AA1 9 PHE A 47 TRP A 52 1 N TRP A 49 O THR A 76 SHEET 3 AA1 9 VAL A 6 ARG A 12 1 N VAL A 8 O TYR A 50 SHEET 4 AA1 9 MET A 138 HIS A 142 1 O MET A 138 N LEU A 7 SHEET 5 AA1 9 LYS A 165 PHE A 169 1 O GLY A 167 N VAL A 141 SHEET 6 AA1 9 LEU A 198 PHE A 201 1 O GLY A 200 N PHE A 168 SHEET 7 AA1 9 ARG A 233 ALA A 239 1 O SER A 236 N ILE A 199 SHEET 8 AA1 9 GLY A 227 TYR A 230 -1 N ILE A 228 O ILE A 235 SHEET 9 AA1 9 VAL A 221 THR A 223 -1 N SER A 222 O LYS A 229 SHEET 1 AA2 2 VAL A 15 ARG A 19 0 SHEET 2 AA2 2 TYR A 25 MET A 29 -1 O SER A 28 N THR A 16 SHEET 1 AA3 6 ILE A 350 HIS A 354 0 SHEET 2 AA3 6 VAL A 308 VAL A 315 1 N ALA A 314 O LEU A 353 SHEET 3 AA3 6 LYS A 273 ARG A 280 1 N GLY A 277 O VAL A 313 SHEET 4 AA3 6 VAL A 371 VAL A 374 1 O VAL A 371 N VAL A 276 SHEET 5 AA3 6 VAL A 398 SER A 402 1 O ILE A 400 N CYS A 372 SHEET 6 AA3 6 LEU A 415 VAL A 417 1 O LEU A 415 N LEU A 399 SHEET 1 AA4 9 CYS B 75 ALA B 77 0 SHEET 2 AA4 9 PHE B 47 TRP B 52 1 N TRP B 49 O THR B 76 SHEET 3 AA4 9 VAL B 6 ARG B 12 1 N VAL B 8 O TYR B 50 SHEET 4 AA4 9 MET B 138 HIS B 142 1 O MET B 138 N LEU B 7 SHEET 5 AA4 9 LYS B 165 PHE B 169 1 O GLY B 167 N VAL B 141 SHEET 6 AA4 9 LEU B 198 PHE B 201 1 O GLY B 200 N PHE B 168 SHEET 7 AA4 9 ARG B 233 ALA B 239 1 O SER B 236 N ILE B 199 SHEET 8 AA4 9 GLY B 227 TYR B 230 -1 N ILE B 228 O ILE B 235 SHEET 9 AA4 9 VAL B 221 LEU B 224 -1 N SER B 222 O LYS B 229 SHEET 1 AA5 2 VAL B 15 THR B 16 0 SHEET 2 AA5 2 SER B 28 MET B 29 -1 O SER B 28 N THR B 16 SHEET 1 AA6 6 ILE B 350 LEU B 353 0 SHEET 2 AA6 6 VAL B 308 VAL B 315 1 N ALA B 314 O LEU B 353 SHEET 3 AA6 6 LYS B 273 ARG B 280 1 N ILE B 275 O VAL B 311 SHEET 4 AA6 6 VAL B 371 VAL B 374 1 O VAL B 371 N VAL B 276 SHEET 5 AA6 6 VAL B 398 SER B 402 1 O ILE B 400 N CYS B 372 SHEET 6 AA6 6 LEU B 415 VAL B 417 1 O LEU B 415 N LEU B 399 CISPEP 1 ASN A 22 GLY A 23 0 1.45 CISPEP 2 GLN A 39 GLY A 40 0 15.26 CISPEP 3 LYS A 43 THR A 44 0 14.00 CISPEP 4 GLN B 39 GLY B 40 0 12.89 CISPEP 5 LYS B 43 THR B 44 0 9.80 SITE 1 AC1 22 HIS A 171 HIS A 202 VAL A 278 ARG A 280 SITE 2 AC1 22 LYS A 285 SER A 356 ILE A 357 LEU A 362 SITE 3 AC1 22 ASP A 379 GLY A 380 MET A 381 ASN A 382 SITE 4 AC1 22 LEU A 383 VAL A 384 GLU A 387 HOH A 671 SITE 5 AC1 22 HOH A 714 HOH A 739 HOH A 754 HOH A 796 SITE 6 AC1 22 HOH A 800 HOH A 820 SITE 1 AC2 25 TRP B 98 HIS B 171 HIS B 202 VAL B 278 SITE 2 AC2 25 ARG B 280 LYS B 285 VAL B 315 SER B 356 SITE 3 AC2 25 ILE B 357 LEU B 362 ASP B 379 GLY B 380 SITE 4 AC2 25 MET B 381 ASN B 382 LEU B 383 VAL B 384 SITE 5 AC2 25 GLU B 387 HOH B 614 HOH B 694 HOH B 712 SITE 6 AC2 25 HOH B 724 HOH B 771 HOH B 774 HOH B 786 SITE 7 AC2 25 HOH B 834 CRYST1 98.638 98.638 186.592 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010138 0.005853 0.000000 0.00000 SCALE2 0.000000 0.011706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005359 0.00000