HEADER TRANSPORT PROTEIN 28-JAN-16 5HVD TITLE FULL LENGTH OPEN-FORM SODIUM CHANNEL NAVMS I218C COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: I218C MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOCOCCUS MARINUS (STRAIN ATCC BAA-1437 / SOURCE 3 JCM 17883 / MC-1); SOURCE 4 ORGANISM_TAXID: 156889; SOURCE 5 STRAIN: ATCC BAA-1437 / JCM 17883 / MC-1; SOURCE 6 GENE: MMC1_0798; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: CD41; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15A KEYWDS INTEGRAL MEMBRANE VOLTAGE GATED SODIUM CHANNEL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SULA,J.E.BOOKER,C.E.NAYLOR,B.A.WALLACE REVDAT 3 10-JAN-24 5HVD 1 LINK REVDAT 2 30-AUG-17 5HVD 1 REMARK REVDAT 1 01-MAR-17 5HVD 0 JRNL AUTH A.SULA,J.BOOKER,L.C.NG,C.E.NAYLOR,P.G.DECAEN,B.A.WALLACE JRNL TITL THE COMPLETE STRUCTURE OF AN ACTIVATED OPEN SODIUM CHANNEL. JRNL REF NAT COMMUN V. 8 14205 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28205548 JRNL DOI 10.1038/NCOMMS14205 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.BAGNERIS REMARK 1 TITL ROLE OF THE C-TERMINAL DOMAIN IN THE STRUCTURE AND FUNCTION REMARK 1 TITL 2 OF TETRAMERIC SODIUM CHANNELS. REMARK 1 REF NAT COMMUN V. 4 2465 2013 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 24051986 REMARK 1 DOI 10.1038/NCOMMS3465 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2833 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2124 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2688 REMARK 3 BIN R VALUE (WORKING SET) : 0.2109 REMARK 3 BIN FREE R VALUE : 0.2421 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.12 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.48910 REMARK 3 B22 (A**2) : -10.48910 REMARK 3 B33 (A**2) : 20.97810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.331 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.225 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.217 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.182 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2081 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2814 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 728 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 33 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 299 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2081 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 282 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 3 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2399 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|-1 - A|108 } REMARK 3 ORIGIN FOR THE GROUP (A): 248.8850 -26.0447 239.3670 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: -0.2249 REMARK 3 T33: -0.3146 T12: 0.4988 REMARK 3 T13: 0.0848 T23: -0.1475 REMARK 3 L TENSOR REMARK 3 L11: 4.9539 L22: 3.9600 REMARK 3 L33: 8.0853 L12: -2.3381 REMARK 3 L13: -0.0294 L23: 1.7600 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.1388 S13: 0.8005 REMARK 3 S21: 0.2343 S22: 0.0192 S23: 0.0673 REMARK 3 S31: -1.3389 S32: -0.8095 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|109 - A|234 } REMARK 3 ORIGIN FOR THE GROUP (A): 278.9690 -43.2508 233.9370 REMARK 3 T TENSOR REMARK 3 T11: -0.4440 T22: -0.5002 REMARK 3 T33: -0.4760 T12: -0.0667 REMARK 3 T13: -0.0127 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.8156 L22: 0.8758 REMARK 3 L33: 3.1633 L12: -0.2526 REMARK 3 L13: -0.0032 L23: 0.1898 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.2670 S13: 0.0722 REMARK 3 S21: 0.2262 S22: -0.0028 S23: 0.0062 REMARK 3 S31: -0.4734 S32: 0.1550 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|235 - A|261 } REMARK 3 ORIGIN FOR THE GROUP (A): 272.5790 -46.0907 276.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.5214 T22: 0.2944 REMARK 3 T33: 0.1424 T12: -0.0090 REMARK 3 T13: 0.0103 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.3199 L22: 0.5872 REMARK 3 L33: 3.0791 L12: -3.8018 REMARK 3 L13: -1.4264 L23: -0.6033 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: -0.3376 S13: -0.1630 REMARK 3 S21: 0.3329 S22: 0.0448 S23: -0.1504 REMARK 3 S31: -0.1283 S32: -0.1218 S33: -0.1212 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97718 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BI-MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS OCT 15, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 45.50 REMARK 200 R MERGE FOR SHELL (I) : 3.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3RVY REMARK 200 REMARK 200 REMARK: BIPYRAMIDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NACL, 0.1 M MES BUFFER, PH 6.5, REMARK 280 37.8% V/V POLYETHYLENE GLYCOL (PEG) 400 AND 4% ETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.79000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.85500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 54.79000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 104.85500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.79000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 104.85500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 54.79000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 104.85500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.79000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 104.85500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 54.79000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 104.85500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.79000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 104.85500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.79000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.79000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 104.85500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -197.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.58000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 109.58000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 109.58000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 109.58000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 301 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 302 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A 92 REMARK 465 GLN A 93 REMARK 465 GLY A 94 REMARK 465 SER A 95 REMARK 465 LEU A 96 REMARK 465 SER A 97 REMARK 465 VAL A 98 REMARK 465 LEU A 99 REMARK 465 ASN A 262 REMARK 465 ASN A 263 REMARK 465 GLU A 264 REMARK 465 LEU A 265 REMARK 465 LEU A 266 REMARK 465 GLN A 267 REMARK 465 ARG A 268 REMARK 465 GLN A 269 REMARK 465 GLN A 270 REMARK 465 PRO A 271 REMARK 465 GLN A 272 REMARK 465 LYS A 273 REMARK 465 LYS A 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 GLN A 258 CG CD OE1 NE2 REMARK 470 LEU A 259 CG CD1 CD2 REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 429 O HOH A 434 0.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 424 O HOH A 427 3655 1.62 REMARK 500 NH2 ARG A 251 OD1 ASP A 253 3655 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 101 -48.53 73.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 489 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 490 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 491 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 492 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 493 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A 494 DISTANCE = 8.90 ANGSTROMS REMARK 525 HOH A 495 DISTANCE = 9.61 ANGSTROMS REMARK 525 HOH A 496 DISTANCE = 10.43 ANGSTROMS REMARK 525 HOH A 497 DISTANCE = 11.42 ANGSTROMS REMARK 525 HOH A 498 DISTANCE = 11.73 ANGSTROMS REMARK 525 HOH A 499 DISTANCE = 12.92 ANGSTROMS REMARK 525 HOH A 500 DISTANCE = 13.24 ANGSTROMS REMARK 525 HOH A 501 DISTANCE = 13.62 ANGSTROMS REMARK 525 HOH A 502 DISTANCE = 13.91 ANGSTROMS REMARK 525 HOH A 503 DISTANCE = 14.27 ANGSTROMS REMARK 525 HOH A 504 DISTANCE = 15.43 ANGSTROMS REMARK 525 HOH A 505 DISTANCE = 15.97 ANGSTROMS REMARK 525 HOH A 506 DISTANCE = 16.98 ANGSTROMS REMARK 525 HOH A 507 DISTANCE = 17.00 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 18.57 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 19.38 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 20.17 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 21.09 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2CV A 304 REMARK 610 12P A 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 424 O REMARK 620 2 HOH A 424 O 80.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 427 O REMARK 620 2 HOH A 427 O 126.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2CV A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12P A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 306 DBREF 5HVD A 1 274 UNP A0L5S6 A0L5S6_MAGMM 1 274 SEQADV 5HVD GLY A -2 UNP A0L5S6 EXPRESSION TAG SEQADV 5HVD SER A -1 UNP A0L5S6 EXPRESSION TAG SEQADV 5HVD HIS A 0 UNP A0L5S6 EXPRESSION TAG SEQADV 5HVD CYS A 218 UNP A0L5S6 ILE 218 ENGINEERED MUTATION SEQRES 1 A 277 GLY SER HIS MET SER ARG LYS ILE ARG ASP LEU ILE GLU SEQRES 2 A 277 SER LYS ARG PHE GLN ASN VAL ILE THR ALA ILE ILE VAL SEQRES 3 A 277 LEU ASN GLY ALA VAL LEU GLY LEU LEU THR ASP THR THR SEQRES 4 A 277 LEU SER ALA SER SER GLN ASN LEU LEU GLU ARG VAL ASP SEQRES 5 A 277 GLN LEU CYS LEU THR ILE PHE ILE VAL GLU ILE SER LEU SEQRES 6 A 277 LYS ILE TYR ALA TYR GLY VAL ARG GLY PHE PHE ARG SER SEQRES 7 A 277 GLY TRP ASN LEU PHE ASP PHE VAL ILE VAL ALA ILE ALA SEQRES 8 A 277 LEU MET PRO ALA GLN GLY SER LEU SER VAL LEU ARG THR SEQRES 9 A 277 PHE ARG ILE PHE ARG VAL MET ARG LEU VAL SER VAL ILE SEQRES 10 A 277 PRO THR MET ARG ARG VAL VAL GLN GLY MET LEU LEU ALA SEQRES 11 A 277 LEU PRO GLY VAL GLY SER VAL ALA ALA LEU LEU THR VAL SEQRES 12 A 277 VAL PHE TYR ILE ALA ALA VAL MET ALA THR ASN LEU TYR SEQRES 13 A 277 GLY ALA THR PHE PRO GLU TRP PHE GLY ASP LEU SER LYS SEQRES 14 A 277 SER LEU TYR THR LEU PHE GLN VAL MET THR LEU GLU SER SEQRES 15 A 277 TRP SER MET GLY ILE VAL ARG PRO VAL MET ASN VAL HIS SEQRES 16 A 277 PRO ASN ALA TRP VAL PHE PHE ILE PRO PHE ILE MET LEU SEQRES 17 A 277 THR THR PHE THR VAL LEU ASN LEU PHE ILE GLY ILE CYS SEQRES 18 A 277 VAL ASP ALA MET ALA ILE THR LYS GLU GLN GLU GLU GLU SEQRES 19 A 277 ALA LYS THR GLY HIS HIS GLN GLU PRO ILE SER GLN THR SEQRES 20 A 277 LEU LEU HIS LEU GLY ASP ARG LEU ASP ARG ILE GLU LYS SEQRES 21 A 277 GLN LEU ALA GLN ASN ASN GLU LEU LEU GLN ARG GLN GLN SEQRES 22 A 277 PRO GLN LYS LYS HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET 2CV A 304 20 HET 12P A 305 34 HET MES A 306 12 HETNAM NA SODIUM ION HETNAM 2CV HEGA-10 HETNAM 12P DODECAETHYLENE GLYCOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 2 NA 3(NA 1+) FORMUL 5 2CV C18 H37 N O7 FORMUL 6 12P C24 H50 O13 FORMUL 7 MES C6 H13 N O4 S FORMUL 8 HOH *111(H2 O) HELIX 1 AA1 SER A -1 GLU A 10 1 12 HELIX 2 AA2 SER A 11 LEU A 32 1 22 HELIX 3 AA3 SER A 38 GLY A 68 1 31 HELIX 4 AA4 GLY A 68 PHE A 73 1 6 HELIX 5 AA5 SER A 75 ALA A 88 1 14 HELIX 6 AA6 PHE A 102 VAL A 107 5 6 HELIX 7 AA7 MET A 108 ILE A 114 1 7 HELIX 8 AA8 ILE A 114 ALA A 127 1 14 HELIX 9 AA9 LEU A 128 GLY A 130 5 3 HELIX 10 AB1 VAL A 131 GLY A 154 1 24 HELIX 11 AB2 PHE A 157 GLY A 162 1 6 HELIX 12 AB3 ASP A 163 THR A 176 1 14 HELIX 13 AB4 ILE A 184 HIS A 192 1 9 HELIX 14 AB5 ALA A 195 GLY A 235 1 41 HELIX 15 AB6 PRO A 240 GLN A 261 1 22 LINK NA NA A 301 O HOH A 424 1555 1555 2.95 LINK NA NA A 301 O HOH A 424 1555 2665 2.95 LINK NA NA A 302 O HOH A 427 1555 1555 2.97 LINK NA NA A 302 O HOH A 427 1555 2665 2.97 CISPEP 1 ARG A 70 GLY A 71 0 8.45 SITE 1 AC1 1 HOH A 424 SITE 1 AC2 2 NA A 303 HOH A 427 SITE 1 AC3 1 NA A 302 SITE 1 AC4 6 SER A 165 MET A 189 ASN A 194 TRP A 196 SITE 2 AC4 6 HOH A 423 HOH A 425 SITE 1 AC5 11 PHE A 105 MET A 124 ILE A 144 MET A 148 SITE 2 AC5 11 TYR A 153 HIS A 192 PRO A 193 ASN A 194 SITE 3 AC5 11 PHE A 198 PHE A 208 HOH A 419 SITE 1 AC6 2 LEU A 205 HOH A 429 CRYST1 109.580 109.580 209.710 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004768 0.00000