HEADER TRANSFERASE 28-JAN-16 5HVL TITLE STRUCTURE OF CANDIDA ALBICANS TREHALOSE-6-PHOSPHATE SYNTHASE IN TITLE 2 COMPLEX WITH UDP AND VALIDOXYLAMINE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TREHALOSE-6-PHOSPHATE SYNTHASE,UDP-GLUCOSE-GLUCOSEPHOSPHATE COMPND 5 GLUCOSYLTRANSFERASE; COMPND 6 EC: 2.4.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: TPS1, CAO19.13961, CAO19.6640; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS TREHALOSE-6-PHOSPHATE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MIAO,R.G.BRENNAN REVDAT 7 03-APR-24 5HVL 1 REMARK REVDAT 6 06-MAR-24 5HVL 1 REMARK REVDAT 5 11-DEC-19 5HVL 1 REMARK REVDAT 4 27-SEP-17 5HVL 1 JRNL REVDAT 3 20-SEP-17 5HVL 1 REMARK REVDAT 2 17-MAY-17 5HVL 1 REMARK REVDAT 1 03-MAY-17 5HVL 0 JRNL AUTH Y.MIAO,J.L.TENOR,D.L.TOFFALETTI,S.A.MASKARINEC,J.LIU, JRNL AUTH 2 R.E.LEE,J.R.PERFECT,R.G.BRENNAN JRNL TITL STRUCTURAL AND IN VIVO STUDIES ON TREHALOSE-6-PHOSPHATE JRNL TITL 2 SYNTHASE FROM PATHOGENIC FUNGI PROVIDE INSIGHTS INTO ITS JRNL TITL 3 CATALYTIC MECHANISM, BIOLOGICAL NECESSITY, AND POTENTIAL FOR JRNL TITL 4 NOVEL ANTIFUNGAL DRUG DESIGN. JRNL REF MBIO V. 8 2017 JRNL REFN ESSN 2150-7511 JRNL PMID 28743811 JRNL DOI 10.1128/MBIO.00643-17 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 103622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4796 - 4.3276 0.96 7531 149 0.1744 0.1946 REMARK 3 2 4.3276 - 3.4357 1.00 7470 146 0.1629 0.1701 REMARK 3 3 3.4357 - 3.0016 1.00 7390 145 0.1922 0.2324 REMARK 3 4 3.0016 - 2.7273 1.00 7311 144 0.1968 0.2219 REMARK 3 5 2.7273 - 2.5319 1.00 7296 144 0.1898 0.2221 REMARK 3 6 2.5319 - 2.3826 1.00 7265 142 0.1843 0.2134 REMARK 3 7 2.3826 - 2.2633 1.00 7223 143 0.1769 0.2077 REMARK 3 8 2.2633 - 2.1648 1.00 7252 142 0.1762 0.2240 REMARK 3 9 2.1648 - 2.0815 1.00 7212 141 0.1735 0.2127 REMARK 3 10 2.0815 - 2.0096 1.00 7209 142 0.1729 0.1923 REMARK 3 11 2.0096 - 1.9468 1.00 7169 141 0.1746 0.2425 REMARK 3 12 1.9468 - 1.8912 1.00 7192 141 0.1813 0.2231 REMARK 3 13 1.8912 - 1.8414 1.00 7183 142 0.1878 0.2509 REMARK 3 14 1.8414 - 1.7965 0.96 6921 136 0.1947 0.2479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7798 REMARK 3 ANGLE : 1.113 10578 REMARK 3 CHIRALITY : 0.054 1173 REMARK 3 PLANARITY : 0.005 1329 REMARK 3 DIHEDRAL : 12.924 2850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CANDIDA ALBICANS TPS1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS, 40% REMARK 280 PEG 400, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 188.46000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.23000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.34500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.11500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 235.57500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 188.46000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 94.23000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.11500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.34500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 235.57500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -94.23000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 -115.56300 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 47.11500 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -115.56300 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -47.11500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 471 REMARK 465 PRO A 472 REMARK 465 GLN A 473 REMARK 465 LYS A 474 REMARK 465 SER A 475 REMARK 465 LEU A 476 REMARK 465 ARG A 477 REMARK 465 ASP A 478 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 GLN B 3 REMARK 465 CYS B 470 REMARK 465 ASN B 471 REMARK 465 PRO B 472 REMARK 465 GLN B 473 REMARK 465 LYS B 474 REMARK 465 SER B 475 REMARK 465 LEU B 476 REMARK 465 ARG B 477 REMARK 465 ASP B 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 611 O HOH B 901 1.87 REMARK 500 OD1 ASP A 279 O HOH A 601 2.08 REMARK 500 O HOH A 723 O HOH A 782 2.10 REMARK 500 O HOH A 601 O HOH A 695 2.10 REMARK 500 OE2 GLU A 303 O HOH A 602 2.12 REMARK 500 O HOH A 640 O HOH A 773 2.13 REMARK 500 O HOH A 619 O HOH A 665 2.14 REMARK 500 O HOH A 887 O HOH A 917 2.16 REMARK 500 NZ LYS A 355 O HOH A 603 2.18 REMARK 500 OE2 GLU B 438 O HOH B 601 2.18 REMARK 500 O HOH B 771 O HOH B 897 2.19 REMARK 500 OD2 ASP B 424 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 44 -59.03 -132.71 REMARK 500 ILE A 96 -59.23 -126.31 REMARK 500 ASP A 143 173.77 81.68 REMARK 500 SER A 176 140.26 -36.01 REMARK 500 MET A 381 -67.24 -130.83 REMARK 500 ASN A 382 108.63 92.11 REMARK 500 THR B 44 -116.57 -90.65 REMARK 500 ILE B 96 -60.35 -126.74 REMARK 500 ASN B 109 79.71 -107.67 REMARK 500 ASP B 143 176.92 78.51 REMARK 500 MET B 381 -66.62 -130.93 REMARK 500 ASN B 382 106.70 90.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 22 GLY A 23 -46.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 960 DISTANCE = 6.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VDM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VDM B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HVM RELATED DB: PDB REMARK 900 RELATED ID: 5HVO RELATED DB: PDB REMARK 900 RELATED ID: 5HUS RELATED DB: PDB REMARK 900 RELATED ID: 5HUT RELATED DB: PDB REMARK 900 RELATED ID: 5HUU RELATED DB: PDB REMARK 900 RELATED ID: 5HUV RELATED DB: PDB DBREF 5HVL A 1 478 UNP Q92410 TPS1_CANAL 1 478 DBREF 5HVL B 1 478 UNP Q92410 TPS1_CANAL 1 478 SEQRES 1 A 478 MET VAL GLN GLY LYS VAL LEU VAL VAL SER ASN ARG ILE SEQRES 2 A 478 PRO VAL THR ILE LYS ARG LEU ASP ASN GLY SER TYR ASP SEQRES 3 A 478 TYR SER MET SER SER GLY GLY LEU VAL THR ALA LEU GLN SEQRES 4 A 478 GLY LEU LYS LYS THR THR GLU PHE GLN TRP TYR GLY TRP SEQRES 5 A 478 PRO GLY LEU GLU ILE PRO GLU ASP GLU GLN THR LYS VAL SEQRES 6 A 478 ASN ASP GLU LEU LYS SER LYS PHE ASN CYS THR ALA ILE SEQRES 7 A 478 PHE LEU SER ASP THR ILE ALA ASP LEU HIS TYR ASN GLY SEQRES 8 A 478 PHE SER ASN SER ILE LEU TRP PRO LEU PHE HIS TYR HIS SEQRES 9 A 478 PRO GLY GLU MET ASN PHE ASP GLU ASN ALA TRP ALA ALA SEQRES 10 A 478 TYR ILE GLU ALA ASN LYS LYS PHE ALA LEU GLU ILE VAL SEQRES 11 A 478 LYS GLN VAL ASN ASP ASP ASP MET ILE TRP VAL HIS ASP SEQRES 12 A 478 TYR HIS LEU MET LEU LEU PRO GLU MET LEU ARG GLN GLU SEQRES 13 A 478 ILE GLY ASN LYS LYS LYS ASN ILE LYS ILE GLY PHE PHE SEQRES 14 A 478 LEU HIS THR PRO PHE PRO SER SER GLU ILE TYR ARG ILE SEQRES 15 A 478 LEU PRO VAL ARG LYS GLU ILE LEU GLU GLY VAL LEU SER SEQRES 16 A 478 CYS ASP LEU ILE GLY PHE HIS THR TYR ASP TYR ALA ARG SEQRES 17 A 478 HIS PHE ILE SER SER VAL SER ARG ILE VAL PRO ASN VAL SEQRES 18 A 478 SER THR LEU PRO ASN GLY ILE LYS TYR GLN GLY ARG SER SEQRES 19 A 478 ILE SER ILE GLY ALA PHE PRO ILE GLY ILE ASP VAL ASP SEQRES 20 A 478 ASN PHE ILE ASP GLY LEU LYS LYS ASP SER VAL VAL GLU SEQRES 21 A 478 ARG ILE LYS GLN LEU LYS SER LYS PHE LYS ASP VAL LYS SEQRES 22 A 478 VAL ILE VAL GLY VAL ASP ARG LEU ASP TYR ILE LYS GLY SEQRES 23 A 478 VAL PRO GLN LYS LEU HIS ALA PHE GLU VAL PHE LEU ASN SEQRES 24 A 478 GLU ASN PRO GLU TRP ILE GLY LYS VAL VAL LEU VAL GLN SEQRES 25 A 478 VAL ALA VAL PRO SER ARG GLY ASP VAL GLU GLU TYR GLN SEQRES 26 A 478 SER LEU ARG SER THR VAL SER GLU LEU VAL GLY ARG ILE SEQRES 27 A 478 ASN GLY GLU PHE GLY THR VAL GLU PHE VAL PRO ILE HIS SEQRES 28 A 478 TYR LEU HIS LYS SER ILE PRO PHE ASP GLU LEU ILE SER SEQRES 29 A 478 LEU TYR ASN ILE SER ASP VAL CYS LEU VAL SER SER THR SEQRES 30 A 478 ARG ASP GLY MET ASN LEU VAL SER TYR GLU TYR ILE ALA SEQRES 31 A 478 CYS GLN GLN ASP ARG LYS GLY VAL LEU ILE LEU SER GLU SEQRES 32 A 478 PHE ALA GLY ALA ALA GLN SER LEU ASN GLY ALA LEU ILE SEQRES 33 A 478 VAL ASN PRO TRP ASN THR GLU ASP LEU SER GLU ALA ILE SEQRES 34 A 478 LYS GLU SER LEU THR LEU PRO GLU GLU LYS ARG GLU PHE SEQRES 35 A 478 ASN PHE LYS LYS LEU PHE THR TYR ILE SER LYS TYR THR SEQRES 36 A 478 SER GLY PHE TRP GLY GLU SER PHE VAL LYS GLU LEU TYR SEQRES 37 A 478 LYS CYS ASN PRO GLN LYS SER LEU ARG ASP SEQRES 1 B 478 MET VAL GLN GLY LYS VAL LEU VAL VAL SER ASN ARG ILE SEQRES 2 B 478 PRO VAL THR ILE LYS ARG LEU ASP ASN GLY SER TYR ASP SEQRES 3 B 478 TYR SER MET SER SER GLY GLY LEU VAL THR ALA LEU GLN SEQRES 4 B 478 GLY LEU LYS LYS THR THR GLU PHE GLN TRP TYR GLY TRP SEQRES 5 B 478 PRO GLY LEU GLU ILE PRO GLU ASP GLU GLN THR LYS VAL SEQRES 6 B 478 ASN ASP GLU LEU LYS SER LYS PHE ASN CYS THR ALA ILE SEQRES 7 B 478 PHE LEU SER ASP THR ILE ALA ASP LEU HIS TYR ASN GLY SEQRES 8 B 478 PHE SER ASN SER ILE LEU TRP PRO LEU PHE HIS TYR HIS SEQRES 9 B 478 PRO GLY GLU MET ASN PHE ASP GLU ASN ALA TRP ALA ALA SEQRES 10 B 478 TYR ILE GLU ALA ASN LYS LYS PHE ALA LEU GLU ILE VAL SEQRES 11 B 478 LYS GLN VAL ASN ASP ASP ASP MET ILE TRP VAL HIS ASP SEQRES 12 B 478 TYR HIS LEU MET LEU LEU PRO GLU MET LEU ARG GLN GLU SEQRES 13 B 478 ILE GLY ASN LYS LYS LYS ASN ILE LYS ILE GLY PHE PHE SEQRES 14 B 478 LEU HIS THR PRO PHE PRO SER SER GLU ILE TYR ARG ILE SEQRES 15 B 478 LEU PRO VAL ARG LYS GLU ILE LEU GLU GLY VAL LEU SER SEQRES 16 B 478 CYS ASP LEU ILE GLY PHE HIS THR TYR ASP TYR ALA ARG SEQRES 17 B 478 HIS PHE ILE SER SER VAL SER ARG ILE VAL PRO ASN VAL SEQRES 18 B 478 SER THR LEU PRO ASN GLY ILE LYS TYR GLN GLY ARG SER SEQRES 19 B 478 ILE SER ILE GLY ALA PHE PRO ILE GLY ILE ASP VAL ASP SEQRES 20 B 478 ASN PHE ILE ASP GLY LEU LYS LYS ASP SER VAL VAL GLU SEQRES 21 B 478 ARG ILE LYS GLN LEU LYS SER LYS PHE LYS ASP VAL LYS SEQRES 22 B 478 VAL ILE VAL GLY VAL ASP ARG LEU ASP TYR ILE LYS GLY SEQRES 23 B 478 VAL PRO GLN LYS LEU HIS ALA PHE GLU VAL PHE LEU ASN SEQRES 24 B 478 GLU ASN PRO GLU TRP ILE GLY LYS VAL VAL LEU VAL GLN SEQRES 25 B 478 VAL ALA VAL PRO SER ARG GLY ASP VAL GLU GLU TYR GLN SEQRES 26 B 478 SER LEU ARG SER THR VAL SER GLU LEU VAL GLY ARG ILE SEQRES 27 B 478 ASN GLY GLU PHE GLY THR VAL GLU PHE VAL PRO ILE HIS SEQRES 28 B 478 TYR LEU HIS LYS SER ILE PRO PHE ASP GLU LEU ILE SER SEQRES 29 B 478 LEU TYR ASN ILE SER ASP VAL CYS LEU VAL SER SER THR SEQRES 30 B 478 ARG ASP GLY MET ASN LEU VAL SER TYR GLU TYR ILE ALA SEQRES 31 B 478 CYS GLN GLN ASP ARG LYS GLY VAL LEU ILE LEU SER GLU SEQRES 32 B 478 PHE ALA GLY ALA ALA GLN SER LEU ASN GLY ALA LEU ILE SEQRES 33 B 478 VAL ASN PRO TRP ASN THR GLU ASP LEU SER GLU ALA ILE SEQRES 34 B 478 LYS GLU SER LEU THR LEU PRO GLU GLU LYS ARG GLU PHE SEQRES 35 B 478 ASN PHE LYS LYS LEU PHE THR TYR ILE SER LYS TYR THR SEQRES 36 B 478 SER GLY PHE TRP GLY GLU SER PHE VAL LYS GLU LEU TYR SEQRES 37 B 478 LYS CYS ASN PRO GLN LYS SER LEU ARG ASP HET UDP A 501 36 HET VDM A 502 48 HET SO4 A 503 5 HET UDP B 501 36 HET VDM B 502 48 HET SO4 B 503 5 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM VDM (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2, HETNAM 2 VDM 3,4-TRIHYDROXY-5-(HYDROXYMETHYL) HETNAM 3 VDM CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL HETNAM SO4 SULFATE ION HETSYN VDM VALIDOXYLAMINE FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 VDM 2(C14 H25 N O8) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *731(H2 O) HELIX 1 AA1 GLY A 32 LEU A 38 1 7 HELIX 2 AA2 LEU A 38 LYS A 43 1 6 HELIX 3 AA3 PRO A 58 ASP A 60 5 3 HELIX 4 AA4 GLU A 61 ASN A 74 1 14 HELIX 5 AA5 SER A 81 ASN A 90 1 10 HELIX 6 AA6 ILE A 96 HIS A 102 1 7 HELIX 7 AA7 HIS A 104 MET A 108 5 5 HELIX 8 AA8 ASP A 111 LYS A 131 1 21 HELIX 9 AA9 TYR A 144 MET A 147 5 4 HELIX 10 AB1 LEU A 148 GLY A 158 1 11 HELIX 11 AB2 SER A 176 ARG A 181 1 6 HELIX 12 AB3 VAL A 185 LEU A 194 1 10 HELIX 13 AB4 THR A 203 VAL A 218 1 16 HELIX 14 AB5 ASP A 245 LEU A 253 1 9 HELIX 15 AB6 LYS A 255 PHE A 269 1 15 HELIX 16 AB7 ASP A 282 LYS A 285 5 4 HELIX 17 AB8 GLY A 286 ASN A 301 1 16 HELIX 18 AB9 PRO A 302 ILE A 305 5 4 HELIX 19 AC1 VAL A 321 GLY A 343 1 23 HELIX 20 AC2 PRO A 358 SER A 369 1 12 HELIX 21 AC3 LEU A 383 CYS A 391 1 9 HELIX 22 AC4 ALA A 405 SER A 410 5 6 HELIX 23 AC5 ASN A 421 LEU A 435 1 15 HELIX 24 AC6 PRO A 436 TYR A 454 1 19 HELIX 25 AC7 THR A 455 CYS A 470 1 16 HELIX 26 AC8 GLY B 32 LEU B 38 1 7 HELIX 27 AC9 LEU B 38 THR B 44 1 7 HELIX 28 AD1 PRO B 58 ASP B 60 5 3 HELIX 29 AD2 GLU B 61 ASN B 74 1 14 HELIX 30 AD3 SER B 81 ASN B 90 1 10 HELIX 31 AD4 ILE B 96 HIS B 102 1 7 HELIX 32 AD5 HIS B 104 MET B 108 5 5 HELIX 33 AD6 ASP B 111 VAL B 133 1 23 HELIX 34 AD7 TYR B 144 MET B 147 5 4 HELIX 35 AD8 LEU B 148 GLY B 158 1 11 HELIX 36 AD9 SER B 176 ARG B 181 1 6 HELIX 37 AE1 VAL B 185 LEU B 194 1 10 HELIX 38 AE2 THR B 203 VAL B 218 1 16 HELIX 39 AE3 ASP B 245 LEU B 253 1 9 HELIX 40 AE4 LYS B 255 PHE B 269 1 15 HELIX 41 AE5 ASP B 282 LYS B 285 5 4 HELIX 42 AE6 GLY B 286 ASN B 301 1 16 HELIX 43 AE7 PRO B 302 ILE B 305 5 4 HELIX 44 AE8 VAL B 321 GLY B 343 1 23 HELIX 45 AE9 PRO B 358 SER B 369 1 12 HELIX 46 AF1 LEU B 383 CYS B 391 1 9 HELIX 47 AF2 ALA B 405 SER B 410 5 6 HELIX 48 AF3 ASN B 421 LEU B 435 1 15 HELIX 49 AF4 PRO B 436 TYR B 454 1 19 HELIX 50 AF5 THR B 455 LYS B 469 1 15 SHEET 1 AA1 9 CYS A 75 ALA A 77 0 SHEET 2 AA1 9 PHE A 47 TRP A 52 1 N TRP A 49 O THR A 76 SHEET 3 AA1 9 VAL A 6 ARG A 12 1 N VAL A 8 O GLN A 48 SHEET 4 AA1 9 MET A 138 HIS A 142 1 O TRP A 140 N LEU A 7 SHEET 5 AA1 9 LYS A 165 PHE A 169 1 O GLY A 167 N VAL A 141 SHEET 6 AA1 9 LEU A 198 PHE A 201 1 O GLY A 200 N PHE A 168 SHEET 7 AA1 9 ARG A 233 ALA A 239 1 O SER A 236 N ILE A 199 SHEET 8 AA1 9 GLY A 227 TYR A 230 -1 N ILE A 228 O ILE A 235 SHEET 9 AA1 9 VAL A 221 LEU A 224 -1 N SER A 222 O LYS A 229 SHEET 1 AA2 2 VAL A 15 ARG A 19 0 SHEET 2 AA2 2 TYR A 25 MET A 29 -1 O SER A 28 N THR A 16 SHEET 1 AA3 6 ILE A 350 LEU A 353 0 SHEET 2 AA3 6 VAL A 308 VAL A 315 1 N ALA A 314 O LEU A 353 SHEET 3 AA3 6 LYS A 273 ARG A 280 1 N GLY A 277 O VAL A 313 SHEET 4 AA3 6 VAL A 371 VAL A 374 1 O VAL A 371 N VAL A 276 SHEET 5 AA3 6 VAL A 398 SER A 402 1 O ILE A 400 N CYS A 372 SHEET 6 AA3 6 LEU A 415 VAL A 417 1 O LEU A 415 N LEU A 399 SHEET 1 AA4 9 CYS B 75 ALA B 77 0 SHEET 2 AA4 9 PHE B 47 TRP B 52 1 N TRP B 49 O THR B 76 SHEET 3 AA4 9 VAL B 6 ARG B 12 1 N VAL B 8 O GLN B 48 SHEET 4 AA4 9 MET B 138 HIS B 142 1 O TRP B 140 N LEU B 7 SHEET 5 AA4 9 LYS B 165 PHE B 169 1 O LYS B 165 N ILE B 139 SHEET 6 AA4 9 LEU B 198 PHE B 201 1 O GLY B 200 N PHE B 168 SHEET 7 AA4 9 ARG B 233 ALA B 239 1 O SER B 236 N ILE B 199 SHEET 8 AA4 9 GLY B 227 TYR B 230 -1 N ILE B 228 O ILE B 235 SHEET 9 AA4 9 VAL B 221 LEU B 224 -1 N SER B 222 O LYS B 229 SHEET 1 AA5 2 VAL B 15 ARG B 19 0 SHEET 2 AA5 2 TYR B 25 MET B 29 -1 O ASP B 26 N LYS B 18 SHEET 1 AA6 6 ILE B 350 LEU B 353 0 SHEET 2 AA6 6 VAL B 308 VAL B 315 1 N ALA B 314 O LEU B 353 SHEET 3 AA6 6 LYS B 273 ARG B 280 1 N ILE B 275 O VAL B 311 SHEET 4 AA6 6 VAL B 371 VAL B 374 1 O VAL B 371 N VAL B 276 SHEET 5 AA6 6 VAL B 398 SER B 402 1 O ILE B 400 N CYS B 372 SHEET 6 AA6 6 LEU B 415 VAL B 417 1 O LEU B 415 N LEU B 399 CISPEP 1 ASN B 22 GLY B 23 0 -15.86 SITE 1 AC1 19 ARG A 280 LYS A 285 VAL A 315 SER A 356 SITE 2 AC1 19 ILE A 357 LEU A 362 ASN A 382 LEU A 383 SITE 3 AC1 19 VAL A 384 GLU A 387 VDM A 502 HOH A 635 SITE 4 AC1 19 HOH A 640 HOH A 723 HOH A 729 HOH A 765 SITE 5 AC1 19 HOH A 782 HOH A 793 HOH A 859 SITE 1 AC2 16 ASP A 143 TYR A 144 HIS A 145 HIS A 171 SITE 2 AC2 16 ILE A 242 ARG A 280 ARG A 318 ASP A 379 SITE 3 AC2 16 GLY A 380 MET A 381 ASN A 382 UDP A 501 SITE 4 AC2 16 HOH A 665 HOH A 742 HOH A 799 HOH A 807 SITE 1 AC3 5 SER A 176 SER A 177 ARG A 208 HIS A 209 SITE 2 AC3 5 SER A 212 SITE 1 AC4 19 ARG B 280 LYS B 285 VAL B 315 SER B 356 SITE 2 AC4 19 ILE B 357 LEU B 362 ASN B 382 LEU B 383 SITE 3 AC4 19 VAL B 384 GLU B 387 VDM B 502 HOH B 647 SITE 4 AC4 19 HOH B 662 HOH B 705 HOH B 735 HOH B 745 SITE 5 AC4 19 HOH B 760 HOH B 803 HOH B 805 SITE 1 AC5 14 ASP B 143 HIS B 145 HIS B 171 ILE B 242 SITE 2 AC5 14 ARG B 280 ARG B 318 ASP B 379 GLY B 380 SITE 3 AC5 14 MET B 381 ASN B 382 UDP B 501 HOH B 761 SITE 4 AC5 14 HOH B 763 HOH B 872 SITE 1 AC6 5 SER B 176 SER B 177 ARG B 208 HIS B 209 SITE 2 AC6 5 SER B 212 CRYST1 115.563 115.563 282.690 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008653 0.004996 0.000000 0.00000 SCALE2 0.000000 0.009992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003537 0.00000