HEADER IMMUNE SYSTEM 28-JAN-16 5HVW TITLE MONOMERIC IGG4 FC CAVEAT 5HVW FUC B 9 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-4 CHAIN C REGION; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG4; SOURCE 6 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR PCK9; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 943934 KEYWDS BIOTECHNOLOGY, ANTIBODY ENGINEERING, MONOMERIC FC, MONOVALENT KEYWDS 2 TARGETING, FUSION PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.Y.OGANESYAN,L.SHAN,W.F.DALL'ACQUA REVDAT 2 29-JUL-20 5HVW 1 CAVEAT COMPND REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 17-AUG-16 5HVW 0 JRNL AUTH L.SHAN,M.COLAZET,K.L.ROSENTHAL,X.Q.YU,J.S.BEE,A.FERGUSON, JRNL AUTH 2 M.M.DAMSCHRODER,H.WU,W.F.DALL'ACQUA,P.TSUI,V.OGANESYAN JRNL TITL GENERATION AND CHARACTERIZATION OF AN IGG4 MONOMERIC FC JRNL TITL 2 PLATFORM. JRNL REF PLOS ONE V. 11 60345 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27479095 JRNL DOI 10.1371/JOURNAL.PONE.0160345 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1424 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 2.10000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1848 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1692 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2523 ; 1.845 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3953 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 7.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;39.964 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;17.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1959 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 839 ; 2.341 ; 3.618 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 838 ; 2.339 ; 3.615 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1047 ; 3.751 ; 5.409 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1048 ; 3.750 ; 5.412 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1009 ; 2.947 ; 4.709 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1009 ; 2.923 ; 4.709 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1477 ; 4.604 ; 6.937 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1901 ; 8.388 ;31.990 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1886 ; 8.325 ;31.801 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7892 21.5030 19.3575 REMARK 3 T TENSOR REMARK 3 T11: 0.4500 T22: 0.1972 REMARK 3 T33: 0.2642 T12: -0.0380 REMARK 3 T13: 0.0659 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.6059 L22: 0.2852 REMARK 3 L33: 2.0507 L12: 1.1073 REMARK 3 L13: -2.4886 L23: -0.7118 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: -0.1803 S13: 0.2224 REMARK 3 S21: 0.1179 S22: -0.0713 S23: 0.0555 REMARK 3 S31: -0.5495 S32: 0.2956 S33: -0.0595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8073 14.2777 26.2477 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.2359 REMARK 3 T33: 0.3910 T12: 0.0020 REMARK 3 T13: 0.1355 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 0.8286 L22: 2.0901 REMARK 3 L33: 1.1111 L12: -1.0406 REMARK 3 L13: 0.4275 L23: 0.2095 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: -0.1031 S13: -0.4128 REMARK 3 S21: 0.1779 S22: 0.2477 S23: 0.4406 REMARK 3 S31: 0.0822 S32: -0.0489 S33: -0.1576 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9700 14.6943 15.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.1180 REMARK 3 T33: 0.3143 T12: 0.0492 REMARK 3 T13: 0.0193 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.1541 L22: 1.0201 REMARK 3 L33: 1.7328 L12: 1.0763 REMARK 3 L13: -2.1485 L23: -0.4178 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: 0.0276 S13: -0.0407 REMARK 3 S21: -0.0186 S22: -0.0538 S23: 0.1977 REMARK 3 S31: -0.1114 S32: -0.0400 S33: -0.0361 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3628 18.6620 8.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.3990 REMARK 3 T33: 0.3932 T12: 0.1258 REMARK 3 T13: 0.1094 T23: 0.1233 REMARK 3 L TENSOR REMARK 3 L11: 3.4879 L22: 5.8952 REMARK 3 L33: 8.3990 L12: 4.4381 REMARK 3 L13: -4.8019 L23: -5.4568 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: 0.6269 S13: 0.3601 REMARK 3 S21: -0.2150 S22: 0.6009 S23: 0.4908 REMARK 3 S31: -0.2738 S32: -1.3532 S33: -0.5295 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5011 52.5386 3.4805 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.4958 REMARK 3 T33: 0.4788 T12: 0.1816 REMARK 3 T13: 0.0045 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 1.1165 L22: 5.8291 REMARK 3 L33: 3.7090 L12: 1.4036 REMARK 3 L13: 1.9594 L23: 2.5011 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.3945 S13: 0.3450 REMARK 3 S21: 0.0694 S22: -0.4529 S23: 0.4718 REMARK 3 S31: -0.0159 S32: -0.9477 S33: 0.4767 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 363 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9024 41.7865 6.0728 REMARK 3 T TENSOR REMARK 3 T11: 0.3633 T22: 0.3904 REMARK 3 T33: 0.1839 T12: 0.0538 REMARK 3 T13: 0.0912 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 3.9712 L22: 3.0686 REMARK 3 L33: 1.9055 L12: 3.3972 REMARK 3 L13: 2.7296 L23: 2.2702 REMARK 3 S TENSOR REMARK 3 S11: -0.3826 S12: -0.0873 S13: 0.4388 REMARK 3 S21: -0.1777 S22: 0.1343 S23: 0.4651 REMARK 3 S31: -0.3394 S32: -0.1320 S33: 0.2484 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 419 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2041 35.1775 2.6145 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.2511 REMARK 3 T33: 0.1749 T12: 0.0888 REMARK 3 T13: 0.0064 T23: 0.1508 REMARK 3 L TENSOR REMARK 3 L11: 2.0385 L22: 1.1935 REMARK 3 L33: 0.2840 L12: 1.4883 REMARK 3 L13: 0.5272 L23: 0.5070 REMARK 3 S TENSOR REMARK 3 S11: -0.0893 S12: 0.3428 S13: 0.3498 REMARK 3 S21: -0.1384 S22: 0.1025 S23: 0.1757 REMARK 3 S31: -0.0685 S32: -0.0738 S33: -0.0132 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 436 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9180 34.7573 -0.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1922 REMARK 3 T33: 0.1424 T12: 0.0072 REMARK 3 T13: 0.0627 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 19.1051 L22: 32.2530 REMARK 3 L33: 4.8358 L12: 22.9265 REMARK 3 L13: 3.4983 L23: 5.1209 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: 0.1535 S13: 0.3096 REMARK 3 S21: 0.2028 S22: 0.0132 S23: 0.2891 REMARK 3 S31: -0.0223 S32: 0.4802 S33: 0.1075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.71800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 MM ZNCL2, 90 MM HEPES, PH 7.0, 18% REMARK 280 PEG 6000 (W/V), VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.68950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.03910 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.24300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.68950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.03910 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.24300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.68950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.03910 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.24300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.68950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.03910 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.24300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.68950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.03910 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.24300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.68950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.03910 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.24300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.07820 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.48600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.07820 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.48600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.07820 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.48600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.07820 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.48600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.07820 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 66.48600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.07820 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 66.48600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE NATURAL DIMERIZATION INTERFACE IN CONSTANT REGION OF AN REMARK 300 ANTIBODY HAS BEEN ALTERED, AND IN THE SOLUTION THE MOLECULE IS REMARK 300 INDEED MONOMERIC. HOWEVER, AT HIGH ZN CONCENTRATIONS IT IS DIMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 70390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -187.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 510 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 676 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 436 OE1 GLN A 438 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 416 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 416 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 297 38.98 -89.95 REMARK 500 SER A 298 -29.82 77.68 REMARK 500 ASN A 390 57.78 -94.02 REMARK 500 GLU A 419 7.17 -67.82 REMARK 500 HIS A 433 113.44 -169.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 680 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 681 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 510 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 285 NE2 REMARK 620 2 HIS A 285 NE2 0.0 REMARK 620 3 HOH A 653 O 93.7 93.7 REMARK 620 4 HOH A 653 O 168.3 168.3 74.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 310 NE2 REMARK 620 2 HIS A 433 NE2 161.1 REMARK 620 3 HIS A 435 NE2 140.6 28.0 REMARK 620 4 HOH A 671 O 124.8 36.7 28.7 REMARK 620 N 1 2 3 DBREF 5HVW A 235 444 UNP P01861 IGHG4_HUMAN 115 324 SEQADV 5HVW PHE A 351 UNP P01861 LEU 231 ENGINEERED MUTATION SEQADV 5HVW ARG A 366 UNP P01861 THR 246 ENGINEERED MUTATION SEQADV 5HVW LYS A 395 UNP P01861 PRO 275 ENGINEERED MUTATION SEQADV 5HVW ARG A 405 UNP P01861 PHE 285 ENGINEERED MUTATION SEQADV 5HVW GLU A 407 UNP P01861 TYR 287 ENGINEERED MUTATION SEQRES 1 A 210 LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO SEQRES 2 A 210 LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR SEQRES 3 A 210 CYS VAL VAL VAL ASP VAL SER GLN GLU ASP PRO GLU VAL SEQRES 4 A 210 GLN PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN SEQRES 5 A 210 ALA LYS THR LYS PRO ARG GLU GLU GLN PHE ASN SER THR SEQRES 6 A 210 TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP SEQRES 7 A 210 TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN SEQRES 8 A 210 LYS GLY LEU PRO SER SER ILE GLU LYS THR ILE SER LYS SEQRES 9 A 210 ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR PHE SEQRES 10 A 210 PRO PRO SER GLN GLU GLU MET THR LYS ASN GLN VAL SER SEQRES 11 A 210 LEU ARG CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE SEQRES 12 A 210 ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN SEQRES 13 A 210 TYR LYS THR THR LYS PRO VAL LEU ASP SER ASP GLY SER SEQRES 14 A 210 PHE ARG LEU GLU SER ARG LEU THR VAL ASP LYS SER ARG SEQRES 15 A 210 TRP GLN GLU GLY ASN VAL PHE SER CYS SER VAL MET HIS SEQRES 16 A 210 GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER SEQRES 17 A 210 LEU SER HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET GAL B 6 11 HET MAN B 7 11 HET NAG B 8 14 HET FUC B 9 10 HET ZN A 510 1 HET ZN A 511 1 HET GOL A 512 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 GAL C6 H12 O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *81(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 GLU A 356 LYS A 360 5 5 HELIX 4 AA4 LYS A 414 GLU A 419 1 6 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 VAL A 273 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 ASN A 325 -1 O LYS A 322 N ASN A 276 SHEET 4 AA3 4 LEU A 328 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AA4 4 GLN A 347 PHE A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O ARG A 409 SHEET 1 AA5 4 GLN A 347 PHE A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O ARG A 405 SHEET 1 AA6 3 GLN A 386 GLU A 388 0 SHEET 2 AA6 3 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 3 SER A 424 MET A 428 -1 O SER A 426 N GLU A 380 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.02 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.04 LINK ND2 ASN A 297 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 9 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.45 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.43 LINK O4 NAG B 5 C1 GAL B 6 1555 1555 1.45 LINK O2 MAN B 7 C1 NAG B 8 1555 1555 1.43 LINK NE2 HIS A 285 ZN ZN A 510 1555 1555 2.38 LINK NE2 HIS A 285 ZN ZN A 510 1555 2555 2.38 LINK NE2 HIS A 310 ZN ZN A 511 1555 4555 2.21 LINK NE2 HIS A 433 ZN ZN A 511 1555 1555 2.13 LINK NE2 HIS A 435 ZN ZN A 511 1555 1555 1.94 LINK ZN ZN A 510 O HOH A 653 1555 1555 1.97 LINK ZN ZN A 510 O HOH A 653 1555 2555 1.97 LINK ZN ZN A 511 O HOH A 671 1555 1555 2.19 CISPEP 1 TYR A 373 PRO A 374 0 -1.97 CRYST1 121.379 121.379 99.729 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008239 0.004757 0.000000 0.00000 SCALE2 0.000000 0.009513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010027 0.00000