HEADER HYDROLASE 29-JAN-16 5HWU TITLE CRYSTAL STRUCTURE OF DR2231_E46A MUTANT IN COMPLEX WITH DUMPNPP AND TITLE 2 MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DR2231; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 GENE: DR_2231; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS ALPHA HELIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.MOTA,A.M.D.GONCALVES,D.DE SANCTIS REVDAT 5 10-JAN-24 5HWU 1 REMARK LINK REVDAT 4 04-APR-18 5HWU 1 COMPND AUTHOR REVDAT 3 24-JAN-18 5HWU 1 SOURCE REVDAT 2 14-DEC-16 5HWU 1 JRNL REVDAT 1 26-OCT-16 5HWU 0 JRNL AUTH C.S.MOTA,A.M.GONCALVES,D.DE SANCTIS JRNL TITL DEINOCOCCUS RADIODURANS DR2231 IS A TWO-METAL-ION MECHANISM JRNL TITL 2 HYDROLASE WITH EXCLUSIVE ACTIVITY ON DUTP. JRNL REF FEBS J. V. 283 4274 2016 JRNL REFN ISSN 1742-4658 JRNL PMID 27739259 JRNL DOI 10.1111/FEBS.13923 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5294 - 4.8055 0.99 2569 123 0.2060 0.2383 REMARK 3 2 4.8055 - 3.8151 0.99 2619 92 0.1688 0.1715 REMARK 3 3 3.8151 - 3.3331 0.99 2529 158 0.1677 0.2047 REMARK 3 4 3.3331 - 3.0285 0.99 2604 131 0.1891 0.2436 REMARK 3 5 3.0285 - 2.8115 1.00 2563 164 0.1938 0.2738 REMARK 3 6 2.8115 - 2.6457 1.00 2581 121 0.2062 0.2745 REMARK 3 7 2.6457 - 2.5132 1.00 2572 155 0.2204 0.2687 REMARK 3 8 2.5132 - 2.4039 1.00 2561 139 0.2141 0.3201 REMARK 3 9 2.4039 - 2.3113 0.99 2551 166 0.2308 0.2577 REMARK 3 10 2.3113 - 2.2316 1.00 2556 129 0.2458 0.2990 REMARK 3 11 2.2316 - 2.1618 1.00 2619 135 0.2606 0.3561 REMARK 3 12 2.1618 - 2.1000 1.00 2585 127 0.2674 0.2842 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2146 REMARK 3 ANGLE : 0.867 2901 REMARK 3 CHIRALITY : 0.039 322 REMARK 3 PLANARITY : 0.007 387 REMARK 3 DIHEDRAL : 19.103 805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9011 10.7315 -8.6664 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.3812 REMARK 3 T33: 0.2687 T12: 0.0175 REMARK 3 T13: 0.0375 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1397 L22: 0.2829 REMARK 3 L33: 0.2740 L12: -0.1244 REMARK 3 L13: -0.0660 L23: 0.1296 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.5847 S13: -0.2097 REMARK 3 S21: 0.1756 S22: -0.0272 S23: 0.2455 REMARK 3 S31: 0.1224 S32: -0.1164 S33: -0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0179 17.8352 -20.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.1378 REMARK 3 T33: 0.2003 T12: -0.0154 REMARK 3 T13: 0.0148 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 1.6860 L22: 0.6447 REMARK 3 L33: 0.7187 L12: -0.0581 REMARK 3 L13: -0.5787 L23: 0.0916 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.1733 S13: 0.1029 REMARK 3 S21: 0.0121 S22: 0.0428 S23: -0.0235 REMARK 3 S31: -0.0640 S32: 0.0132 S33: 0.0695 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6596 5.8243 -38.1634 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.2958 REMARK 3 T33: 0.2459 T12: -0.0324 REMARK 3 T13: 0.0401 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 0.7559 L22: 1.7600 REMARK 3 L33: 0.2743 L12: -0.9874 REMARK 3 L13: 0.3793 L23: -0.3659 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: 0.5421 S13: -0.2718 REMARK 3 S21: -0.0990 S22: -0.0894 S23: -0.3913 REMARK 3 S31: 0.5038 S32: -0.3460 S33: -0.2192 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3976 -1.2472 -25.3652 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.2855 REMARK 3 T33: 0.4635 T12: -0.1296 REMARK 3 T13: 0.1260 T23: -0.1406 REMARK 3 L TENSOR REMARK 3 L11: 1.1235 L22: 1.9821 REMARK 3 L33: 0.7668 L12: -1.4109 REMARK 3 L13: 0.9131 L23: -1.1297 REMARK 3 S TENSOR REMARK 3 S11: -0.5051 S12: 0.3136 S13: -0.8816 REMARK 3 S21: 0.0793 S22: 0.3292 S23: 0.4781 REMARK 3 S31: 0.0202 S32: -0.5185 S33: 0.3645 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4147 6.3945 -21.5480 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.2016 REMARK 3 T33: 0.2200 T12: 0.0115 REMARK 3 T13: 0.0207 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.3493 L22: 0.2247 REMARK 3 L33: 0.8746 L12: -0.2445 REMARK 3 L13: -0.4643 L23: 0.2339 REMARK 3 S TENSOR REMARK 3 S11: -0.1575 S12: -0.2326 S13: -0.1011 REMARK 3 S21: 0.1286 S22: 0.1247 S23: -0.0764 REMARK 3 S31: 0.2239 S32: 0.4214 S33: 0.0306 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5762 17.5720 -29.6128 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1881 REMARK 3 T33: 0.1894 T12: 0.0069 REMARK 3 T13: -0.0006 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.7050 L22: 0.0437 REMARK 3 L33: 0.6066 L12: -0.2677 REMARK 3 L13: -0.1820 L23: 0.1938 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: 0.6365 S13: -0.0240 REMARK 3 S21: -0.0247 S22: 0.0005 S23: 0.0066 REMARK 3 S31: -0.0713 S32: -0.2234 S33: -0.0112 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8653 12.9093 -17.9668 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.1996 REMARK 3 T33: 0.1534 T12: -0.0089 REMARK 3 T13: 0.0066 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.6945 L22: 0.4946 REMARK 3 L33: 0.6849 L12: -0.4619 REMARK 3 L13: -0.4761 L23: 0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.0845 S13: -0.0057 REMARK 3 S21: 0.0283 S22: -0.0025 S23: 0.0467 REMARK 3 S31: 0.0475 S32: -0.0350 S33: -0.0014 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5874 22.2202 -4.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.3815 T22: 0.6250 REMARK 3 T33: 0.3604 T12: -0.0450 REMARK 3 T13: 0.0190 T23: -0.1939 REMARK 3 L TENSOR REMARK 3 L11: 0.1672 L22: 0.1544 REMARK 3 L33: 0.5353 L12: 0.0383 REMARK 3 L13: -0.0537 L23: 0.0520 REMARK 3 S TENSOR REMARK 3 S11: 0.0736 S12: -0.7010 S13: 0.2106 REMARK 3 S21: 0.0736 S22: -0.0311 S23: -0.0157 REMARK 3 S31: -0.3207 S32: 0.6200 S33: -0.7313 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.521 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID 2YFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM ACETATE, PEG3350, PH 7.5, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.97900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.97900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.13150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.00700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.13150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.00700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.97900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.13150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.00700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.97900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.13150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.00700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 339 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 24 REMARK 465 ARG B 117 REMARK 465 ARG B 118 REMARK 465 ALA B 119 REMARK 465 ASP B 120 REMARK 465 GLY B 121 REMARK 465 LYS B 122 REMARK 465 GLN B 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 369 O HOH A 372 2.15 REMARK 500 O HOH A 378 O HOH B 378 2.17 REMARK 500 NE ARG B 52 O HOH B 301 2.18 REMARK 500 O TRP A 129 O HOH A 301 2.18 REMARK 500 O HOH B 344 O HOH B 361 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 361 O HOH A 366 7554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 25 78.23 -152.01 REMARK 500 ASP B 97 108.74 -55.69 REMARK 500 ALA B 113 7.91 -67.07 REMARK 500 ASP B 133 73.57 -107.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 369 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 370 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 371 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 372 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 373 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 374 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 375 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 376 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 377 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH A 378 DISTANCE = 9.86 ANGSTROMS REMARK 525 HOH B 373 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 374 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 375 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B 376 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH B 377 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH B 378 DISTANCE = 9.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE1 REMARK 620 2 GLU A 50 OE1 93.2 REMARK 620 3 GLU A 79 OE1 86.8 79.5 REMARK 620 4 ASP A 82 OD2 96.2 170.6 101.7 REMARK 620 5 HOH A 315 O 92.7 88.8 168.2 90.0 REMARK 620 6 HOH A 331 O 175.2 87.9 97.9 82.7 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 47 OE1 REMARK 620 2 GLU B 50 OE1 101.0 REMARK 620 3 GLU B 79 OE1 95.9 87.7 REMARK 620 4 ASP B 82 OD2 96.5 162.4 92.1 REMARK 620 5 HOH B 305 O 91.6 89.8 172.4 88.1 REMARK 620 6 HOH B 309 O 156.6 95.8 101.0 67.0 72.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 ASP B 82 OD2 90.3 REMARK 620 3 DUP B 201 O2B 176.2 86.8 REMARK 620 4 DUP B 201 O3G 97.9 160.8 85.7 REMARK 620 5 HOH B 309 O 101.4 65.2 79.7 96.0 REMARK 620 6 HOH B 341 O 81.4 96.4 96.5 102.0 161.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 203 DBREF 5HWU A 7 144 UNP Q9RS96 Q9RS96_DEIRA 7 144 DBREF 5HWU B 7 144 UNP Q9RS96 Q9RS96_DEIRA 7 144 SEQADV 5HWU ALA A 46 UNP Q9RS96 GLU 46 ENGINEERED MUTATION SEQADV 5HWU ALA B 46 UNP Q9RS96 GLU 46 ENGINEERED MUTATION SEQRES 1 A 138 PRO PRO THR ASN ALA GLU ARG LEU HIS GLU PHE HIS ARG SEQRES 2 A 138 ALA ILE GLY ALA ALA THR PRO GLU ARG PRO THR PRO PRO SEQRES 3 A 138 PRO PRO GLU LEU LEU ARG LEU ARG GLN THR LEU LEU ASP SEQRES 4 A 138 ALA GLU SER ALA GLU VAL ARG ALA GLU ILE ASP HIS LEU SEQRES 5 A 138 LEU ALA ARG GLN ALA ALA GLY GLU ALA LEU SER ALA GLY SEQRES 6 A 138 ASP LEU ALA PRO LEU ALA HIS GLU LEU ALA ASP LEU LEU SEQRES 7 A 138 TYR VAL THR TYR GLY ALA LEU ASP GLN LEU GLY ILE ASP SEQRES 8 A 138 ALA ASP ALA VAL PHE ALA GLU VAL HIS ARG ALA ASN LEU SEQRES 9 A 138 SER LYS ALA SER GLY PRO ARG ARG ALA ASP GLY LYS GLN SEQRES 10 A 138 LEU LYS PRO GLU GLY TRP ARG PRO ALA ASP VAL ARG GLY SEQRES 11 A 138 VAL ILE GLU ARG LEU GLN HIS ALA SEQRES 1 B 138 PRO PRO THR ASN ALA GLU ARG LEU HIS GLU PHE HIS ARG SEQRES 2 B 138 ALA ILE GLY ALA ALA THR PRO GLU ARG PRO THR PRO PRO SEQRES 3 B 138 PRO PRO GLU LEU LEU ARG LEU ARG GLN THR LEU LEU ASP SEQRES 4 B 138 ALA GLU SER ALA GLU VAL ARG ALA GLU ILE ASP HIS LEU SEQRES 5 B 138 LEU ALA ARG GLN ALA ALA GLY GLU ALA LEU SER ALA GLY SEQRES 6 B 138 ASP LEU ALA PRO LEU ALA HIS GLU LEU ALA ASP LEU LEU SEQRES 7 B 138 TYR VAL THR TYR GLY ALA LEU ASP GLN LEU GLY ILE ASP SEQRES 8 B 138 ALA ASP ALA VAL PHE ALA GLU VAL HIS ARG ALA ASN LEU SEQRES 9 B 138 SER LYS ALA SER GLY PRO ARG ARG ALA ASP GLY LYS GLN SEQRES 10 B 138 LEU LYS PRO GLU GLY TRP ARG PRO ALA ASP VAL ARG GLY SEQRES 11 B 138 VAL ILE GLU ARG LEU GLN HIS ALA HET MN A 201 1 HET GOL A 202 6 HET DUP B 201 28 HET MN B 202 1 HET MN B 203 1 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 3(MN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 DUP C9 H16 N3 O13 P3 FORMUL 8 HOH *156(H2 O) HELIX 1 AA1 THR A 9 ILE A 21 1 13 HELIX 2 AA2 PRO A 33 ALA A 64 1 32 HELIX 3 AA3 ALA A 70 ASP A 72 5 3 HELIX 4 AA4 LEU A 73 LEU A 94 1 22 HELIX 5 AA5 ASP A 97 SER A 111 1 15 HELIX 6 AA6 ASP A 133 HIS A 143 1 11 HELIX 7 AA7 THR B 9 ILE B 21 1 13 HELIX 8 AA8 PRO B 33 ALA B 64 1 32 HELIX 9 AA9 ALA B 70 ASP B 72 5 3 HELIX 10 AB1 LEU B 73 LEU B 94 1 22 HELIX 11 AB2 ASP B 97 ALA B 113 1 17 HELIX 12 AB3 ASP B 133 HIS B 143 1 11 LINK OE1 GLU A 47 MN MN A 201 1555 1555 2.25 LINK OE1 GLU A 50 MN MN A 201 1555 1555 2.11 LINK OE1 GLU A 79 MN MN A 201 1555 1555 2.28 LINK OD2 ASP A 82 MN MN A 201 1555 1555 2.14 LINK MN MN A 201 O HOH A 315 1555 1555 2.51 LINK MN MN A 201 O HOH A 331 1555 1555 2.57 LINK OE1 GLU B 47 MN MN B 202 1555 1555 2.26 LINK OE1 GLU B 50 MN MN B 202 1555 1555 2.15 LINK NE2 HIS B 78 MN MN B 203 1555 1555 2.25 LINK OE1 GLU B 79 MN MN B 202 1555 1555 2.11 LINK OD2 ASP B 82 MN MN B 202 1555 1555 2.17 LINK OD2 ASP B 82 MN MN B 203 1555 1555 2.46 LINK O2B DUP B 201 MN MN B 203 1555 1555 2.38 LINK O3G DUP B 201 MN MN B 203 1555 1555 2.25 LINK MN MN B 202 O HOH B 305 1555 1555 2.39 LINK MN MN B 202 O HOH B 309 1555 1555 2.20 LINK MN MN B 203 O HOH B 309 1555 1555 1.95 LINK MN MN B 203 O HOH B 341 1555 1555 2.04 SITE 1 AC1 6 GLU A 47 GLU A 50 GLU A 79 ASP A 82 SITE 2 AC1 6 HOH A 315 HOH A 331 SITE 1 AC2 6 GLU A 47 ASP A 82 TYR A 85 VAL A 86 SITE 2 AC2 6 VAL B 105 ASN B 109 SITE 1 AC3 21 ASN A 109 LYS A 112 LYS A 122 GLN A 123 SITE 2 AC3 21 LYS A 125 HOH A 322 GLU B 47 HIS B 78 SITE 3 AC3 21 ASP B 82 TYR B 85 VAL B 86 MN B 203 SITE 4 AC3 21 HOH B 305 HOH B 309 HOH B 311 HOH B 312 SITE 5 AC3 21 HOH B 317 HOH B 328 HOH B 337 HOH B 342 SITE 6 AC3 21 HOH B 343 SITE 1 AC4 7 GLU B 47 GLU B 50 GLU B 79 ASP B 82 SITE 2 AC4 7 MN B 203 HOH B 305 HOH B 309 SITE 1 AC5 6 HIS B 78 ASP B 82 DUP B 201 MN B 202 SITE 2 AC5 6 HOH B 309 HOH B 341 CRYST1 52.263 78.014 141.958 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007044 0.00000