HEADER PROTEIN BINDING 29-JAN-16 5HXA TITLE CRYSTAL STRUCTURE OF AN UDP-FORMING ALPHA, ALPHA-TERHALOSE-PHOSPHATE TITLE 2 SYNTHASE FROM BURKHOLDERIA XENOVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OSMOREGULATORY TREHALOSE SYNTHESIS PROTEIN A,TREHALOSE-6- COMPND 5 PHOSPHATE SYNTHASE; COMPND 6 EC: 2.4.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS (STRAIN LB400); SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: BXE_A3374; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BROVA.00010.A.B1 KEYWDS SSGCID, BURKHOLDERIA, UDP, UDP-FORMING, ALPHA, ALPHA-TREHALOSE- KEYWDS 2 PHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5HXA 1 REMARK LINK REVDAT 1 10-FEB-16 5HXA 0 JRNL AUTH S.J.MAYCLIN,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF AN UDP-FORMING ALPHA, JRNL TITL 2 ALPHA-TERHALOSE-PHOSPHATE SYNTHASE FROM BURKHOLDERIA JRNL TITL 3 XENOVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 55377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.540 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2962 - 4.8188 0.95 3942 150 0.1632 0.1595 REMARK 3 2 4.8188 - 3.8253 0.98 3862 135 0.1270 0.1625 REMARK 3 3 3.8253 - 3.3419 0.99 3855 135 0.1419 0.1671 REMARK 3 4 3.3419 - 3.0364 1.00 3837 147 0.1646 0.1960 REMARK 3 5 3.0364 - 2.8188 1.00 3838 127 0.1739 0.1978 REMARK 3 6 2.8188 - 2.6526 1.00 3832 124 0.1714 0.1997 REMARK 3 7 2.6526 - 2.5198 1.00 3793 145 0.1629 0.2112 REMARK 3 8 2.5198 - 2.4101 1.00 3795 145 0.1672 0.2008 REMARK 3 9 2.4101 - 2.3173 1.00 3784 148 0.1622 0.2239 REMARK 3 10 2.3173 - 2.2374 1.00 3799 144 0.1612 0.1897 REMARK 3 11 2.2374 - 2.1674 1.00 3762 135 0.1547 0.1844 REMARK 3 12 2.1674 - 2.1055 1.00 3783 139 0.1641 0.2226 REMARK 3 13 2.1055 - 2.0500 1.00 3778 146 0.1700 0.1974 REMARK 3 14 2.0500 - 2.0000 1.00 3759 138 0.1836 0.2122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3721 REMARK 3 ANGLE : 0.766 5056 REMARK 3 CHIRALITY : 0.054 546 REMARK 3 PLANARITY : 0.006 668 REMARK 3 DIHEDRAL : 15.539 2248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4898 -31.0189 -17.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.3334 REMARK 3 T33: 0.2649 T12: 0.0788 REMARK 3 T13: -0.0904 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 8.9158 L22: 6.5662 REMARK 3 L33: 9.1970 L12: 1.1433 REMARK 3 L13: -1.1393 L23: 0.9984 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.6243 S13: 0.2574 REMARK 3 S21: -0.7144 S22: -0.1923 S23: 0.1298 REMARK 3 S31: -0.1175 S32: -0.3325 S33: 0.1731 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.0970 -28.9670 -6.6623 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.1940 REMARK 3 T33: 0.2225 T12: 0.0169 REMARK 3 T13: -0.0551 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.5406 L22: 0.8101 REMARK 3 L33: 1.4223 L12: 0.2322 REMARK 3 L13: -0.2309 L23: -0.1422 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.0067 S13: 0.0770 REMARK 3 S21: -0.0155 S22: -0.0437 S23: 0.1940 REMARK 3 S31: -0.1058 S32: -0.3734 S33: 0.0504 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.7400 -14.4482 -22.1933 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1152 REMARK 3 T33: 0.1293 T12: 0.0329 REMARK 3 T13: -0.0045 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.2178 L22: 3.1380 REMARK 3 L33: 1.3548 L12: 0.3291 REMARK 3 L13: 0.2979 L23: 0.0321 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0215 S13: 0.0233 REMARK 3 S21: 0.0834 S22: -0.0783 S23: 0.1404 REMARK 3 S31: -0.0538 S32: -0.1394 S33: 0.0305 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 415 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.3492 -32.0923 -25.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.2418 T22: 0.0983 REMARK 3 T33: 0.2070 T12: 0.0281 REMARK 3 T13: -0.0545 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.0385 L22: 0.0901 REMARK 3 L33: 1.7900 L12: -0.0761 REMARK 3 L13: -0.9244 L23: -0.1790 REMARK 3 S TENSOR REMARK 3 S11: -0.1261 S12: 0.2004 S13: -0.1726 REMARK 3 S21: -0.1957 S22: 0.0419 S23: -0.0337 REMARK 3 S31: 0.1966 S32: -0.2090 S33: 0.1024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55408 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WTX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 A8 (267517A8): 100MM TRIS:HCL REMARK 280 PH7.0, 20% (W/V) PEG2000MME, 3MM UDP-GLUCOSE, 3MM GLUCOSE-6- REMARK 280 PHOSPHATE, PROTEIN CONC. 20MG/ML, 20% ETHYLENE GLYCOL REMARK 280 CRYOPROTECTANT, PUCK HNK1-2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.71667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.43333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.71667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.43333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.71667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.43333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 31.71667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.43333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 171.18000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1023 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 GLN A 23 REMARK 465 GLU A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 SER A 467 REMARK 465 SER A 468 REMARK 465 VAL A 469 REMARK 465 THR A 470 REMARK 465 ALA A 471 REMARK 465 LYS A 472 REMARK 465 ALA A 473 REMARK 465 VAL A 474 REMARK 465 LYS A 475 REMARK 465 LEU A 476 REMARK 465 ALA A 477 REMARK 465 ASP A 478 REMARK 465 VAL A 479 REMARK 465 THR A 480 REMARK 465 ALA A 481 REMARK 465 SER A 482 REMARK 465 SER A 483 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 SER A 59 OG REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 THR A 309 OG1 CG2 REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 312 CG OD1 OD2 REMARK 470 VAL A 313 CG1 CG2 REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 470 THR A 315 OG1 CG2 REMARK 470 GLN A 317 CG CD OE1 NE2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 271 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 85 -64.30 -96.40 REMARK 500 ASP A 139 174.09 81.36 REMARK 500 SER A 215 -157.60 -121.49 REMARK 500 ASP A 250 49.21 -94.04 REMARK 500 THR A 309 -137.01 -102.93 REMARK 500 ASN A 346 74.76 -101.31 REMARK 500 MET A 373 95.01 -175.03 REMARK 500 ASP A 388 62.03 -159.64 REMARK 500 ASN A 447 57.60 -109.81 REMARK 500 THR A 465 107.77 -57.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1029 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1030 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 512 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 639 O REMARK 620 2 HOH A 646 O 71.0 REMARK 620 3 HOH A 663 O 104.8 90.5 REMARK 620 4 HOH A 837 O 74.4 105.4 162.5 REMARK 620 5 HOH A 884 O 87.9 152.2 77.4 85.1 REMARK 620 6 HOH A 975 O 153.8 103.0 100.7 83.1 103.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 513 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 676 O REMARK 620 2 HOH A 732 O 66.6 REMARK 620 3 HOH A 826 O 76.8 136.1 REMARK 620 4 HOH A 916 O 52.7 59.2 115.1 REMARK 620 5 HOH A 931 O 65.1 117.8 62.1 61.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 513 DBREF 5HXA A 9 483 UNP Q142X8 Q142X8_BURXL 1 475 SEQADV 5HXA MET A 1 UNP Q142X8 INITIATING METHIONINE SEQADV 5HXA ALA A 2 UNP Q142X8 EXPRESSION TAG SEQADV 5HXA HIS A 3 UNP Q142X8 EXPRESSION TAG SEQADV 5HXA HIS A 4 UNP Q142X8 EXPRESSION TAG SEQADV 5HXA HIS A 5 UNP Q142X8 EXPRESSION TAG SEQADV 5HXA HIS A 6 UNP Q142X8 EXPRESSION TAG SEQADV 5HXA HIS A 7 UNP Q142X8 EXPRESSION TAG SEQADV 5HXA HIS A 8 UNP Q142X8 EXPRESSION TAG SEQRES 1 A 483 MET ALA HIS HIS HIS HIS HIS HIS MET SER ARG LEU ILE SEQRES 2 A 483 VAL VAL SER ASN ARG VAL ALA PRO THR GLN GLU GLY ARG SEQRES 3 A 483 PRO ALA ALA GLY GLY LEU ALA ILE GLY VAL LEU ASP ALA SEQRES 4 A 483 LEU LYS GLU THR GLY GLY VAL TRP PHE GLY TRP SER GLY SEQRES 5 A 483 GLU THR VAL SER GLU PRO SER ALA PRO VAL ILE GLU LYS SEQRES 6 A 483 GLN GLY ASN VAL THR TYR ALA THR VAL GLY LEU THR LYS SEQRES 7 A 483 ARG ASP TYR ASP GLN TYR TYR ARG GLY PHE SER ASN ALA SEQRES 8 A 483 THR LEU TRP PRO THR PHE HIS TYR ARG ASN ASP LEU SER SEQRES 9 A 483 ARG TYR ASP ARG GLN GLU TYR ALA GLY TYR GLN ARG VAL SEQRES 10 A 483 ASN ALA THR LEU ALA LYS GLN LEU LYS GLU LEU LEU LYS SEQRES 11 A 483 PRO ASP ASP ILE ILE TRP VAL HIS ASP TYR HIS LEU LEU SEQRES 12 A 483 PRO PHE ALA ARG CYS LEU ARG GLU LEU GLY VAL LYS ASN SEQRES 13 A 483 PRO ILE GLY PHE PHE LEU HIS ILE PRO PHE PRO VAL PRO SEQRES 14 A 483 GLU VAL LEU ARG THR ILE PRO PRO HIS GLU GLU LEU VAL SEQRES 15 A 483 LYS ALA MET CYS SER TYR ASP VAL ILE GLY PHE GLN THR SEQRES 16 A 483 ASP ALA ASP ARG GLN SER PHE VAL ASP PHE ILE GLU ARG SEQRES 17 A 483 GLY GLN HIS GLY THR SER SER GLU ASP GLY MET VAL HIS SEQRES 18 A 483 ALA TYR ASN ARG PHE LEU LYS VAL GLY ALA TYR PRO ILE SEQRES 19 A 483 GLY ILE TYR PRO ASP ALA ILE ALA LYS ALA ALA GLU GLN SEQRES 20 A 483 PHE THR ASP ARG LYS PRO VAL ARG SER LEU ARG ASP GLY SEQRES 21 A 483 MET ARG GLY ARG LYS LEU ILE MET SER VAL ASP ARG LEU SEQRES 22 A 483 ASP TYR SER LYS GLY LEU VAL GLU ARG PHE GLN ALA PHE SEQRES 23 A 483 GLU ARG LEU LEU LEU ASN ALA PRO GLY TRP HIS GLY ARG SEQRES 24 A 483 VAL SER LEU VAL GLN ILE ALA PRO PRO THR ARG ALA ASP SEQRES 25 A 483 VAL GLN THR TYR GLN ARG ILE ARG GLN THR LEU GLU GLY SEQRES 26 A 483 GLU ALA GLY ARG ILE ASN GLY ARG PHE ALA GLN LEU ASP SEQRES 27 A 483 TRP THR PRO ILE GLN TYR LEU ASN ARG LYS TYR GLU ARG SEQRES 28 A 483 ASN LEU LEU MET ALA LEU PHE ARG GLN SER GLN VAL GLY SEQRES 29 A 483 TYR VAL THR PRO LEU ARG ASP GLY MET ASN LEU VAL ALA SEQRES 30 A 483 LYS GLU TYR VAL ALA SER GLN ASP PRO ALA ASP PRO GLY SEQRES 31 A 483 VAL LEU VAL LEU SER GLN PHE ALA GLY ALA ALA GLU GLN SEQRES 32 A 483 LEU PRO GLY ALA LEU VAL VAL ASN PRO PHE ASP LEU SER SEQRES 33 A 483 GLN MET ALA GLU ALA LEU GLU ARG ALA LEU SER MET PRO SEQRES 34 A 483 LEU ALA GLU ARG GLN ALA ARG HIS ALA ASP MET MET ALA SEQRES 35 A 483 PRO MET ARG GLU ASN ASN LEU SER VAL TRP ARG ASP THR SEQRES 36 A 483 PHE LEU ALA ASP LEU ARG ASN VAL ALA THR ALA SER SER SEQRES 37 A 483 VAL THR ALA LYS ALA VAL LYS LEU ALA ASP VAL THR ALA SEQRES 38 A 483 SER SER HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET GOL A 511 6 HET NA A 512 1 HET NA A 513 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EDO 10(C2 H6 O2) FORMUL 12 GOL C3 H8 O3 FORMUL 13 NA 2(NA 1+) FORMUL 15 HOH *430(H2 O) HELIX 1 AA1 GLY A 31 GLY A 44 1 14 HELIX 2 AA2 THR A 77 TYR A 85 1 9 HELIX 3 AA3 GLY A 87 THR A 92 1 6 HELIX 4 AA4 THR A 92 HIS A 98 1 7 HELIX 5 AA5 ARG A 100 SER A 104 5 5 HELIX 6 AA6 ASP A 107 GLU A 127 1 21 HELIX 7 AA7 TYR A 140 LEU A 143 5 4 HELIX 8 AA8 PRO A 144 LEU A 152 1 9 HELIX 9 AA9 VAL A 168 ARG A 173 1 6 HELIX 10 AB1 PRO A 177 CYS A 186 1 10 HELIX 11 AB2 THR A 195 GLY A 209 1 15 HELIX 12 AB3 TYR A 237 PHE A 248 1 12 HELIX 13 AB4 ARG A 251 MET A 261 1 11 HELIX 14 AB5 ASP A 274 LYS A 277 5 4 HELIX 15 AB6 GLY A 278 ALA A 293 1 16 HELIX 16 AB7 PRO A 294 HIS A 297 5 4 HELIX 17 AB8 VAL A 313 ALA A 335 1 23 HELIX 18 AB9 GLU A 350 GLN A 360 1 11 HELIX 19 AC1 ASN A 374 SER A 383 1 10 HELIX 20 AC2 ALA A 400 LEU A 404 5 5 HELIX 21 AC3 ASP A 414 SER A 427 1 14 HELIX 22 AC4 PRO A 429 ASN A 447 1 19 HELIX 23 AC5 ASN A 448 ASN A 462 1 15 SHEET 1 AA110 VAL A 62 GLN A 66 0 SHEET 2 AA110 VAL A 69 LEU A 76 -1 O VAL A 69 N GLN A 66 SHEET 3 AA110 VAL A 46 THR A 54 1 N SER A 51 O VAL A 74 SHEET 4 AA110 LEU A 12 SER A 16 1 N VAL A 14 O PHE A 48 SHEET 5 AA110 ILE A 134 HIS A 138 1 O TRP A 136 N ILE A 13 SHEET 6 AA110 ILE A 158 PHE A 161 1 O GLY A 159 N VAL A 137 SHEET 7 AA110 VAL A 190 PHE A 193 1 O GLY A 192 N PHE A 160 SHEET 8 AA110 ARG A 225 ALA A 231 1 O LYS A 228 N ILE A 191 SHEET 9 AA110 MET A 219 ALA A 222 -1 N VAL A 220 O LEU A 227 SHEET 10 AA110 GLY A 212 SER A 214 -1 N THR A 213 O HIS A 221 SHEET 1 AA2 6 ILE A 342 LEU A 345 0 SHEET 2 AA2 6 VAL A 300 ILE A 305 1 N LEU A 302 O GLN A 343 SHEET 3 AA2 6 LYS A 265 VAL A 270 1 N ILE A 267 O VAL A 303 SHEET 4 AA2 6 VAL A 363 VAL A 366 1 O VAL A 363 N MET A 268 SHEET 5 AA2 6 VAL A 391 SER A 395 1 O VAL A 393 N GLY A 364 SHEET 6 AA2 6 LEU A 408 VAL A 410 1 O LEU A 408 N LEU A 392 LINK NA NA A 512 O HOH A 639 1555 11655 2.25 LINK NA NA A 512 O HOH A 646 1555 11655 2.42 LINK NA NA A 512 O HOH A 663 1555 1555 2.23 LINK NA NA A 512 O HOH A 837 1555 1555 2.26 LINK NA NA A 512 O HOH A 884 1555 1555 2.40 LINK NA NA A 512 O HOH A 975 1555 1555 2.18 LINK NA NA A 513 O HOH A 676 1555 1555 2.85 LINK NA NA A 513 O HOH A 732 1555 1555 2.72 LINK NA NA A 513 O HOH A 826 1555 1555 3.19 LINK NA NA A 513 O HOH A 916 1555 1555 2.37 LINK NA NA A 513 O HOH A 931 1555 1555 2.49 SITE 1 AC1 3 ARG A 79 GLN A 83 GLN A 109 SITE 1 AC2 3 ARG A 251 LYS A 252 ARG A 255 SITE 1 AC3 6 GLN A 396 ALA A 401 HOH A 663 HOH A 814 SITE 2 AC3 6 HOH A 868 HOH A 875 SITE 1 AC4 5 GLN A 336 LEU A 337 ARG A 347 TYR A 349 SITE 2 AC4 5 HOH A 772 SITE 1 AC5 5 ARG A 225 PHE A 226 ARG A 424 GLU A 432 SITE 2 AC5 5 HOH A 659 SITE 1 AC6 3 LEU A 291 ARG A 333 HOH A 829 SITE 1 AC7 1 ARG A 333 SITE 1 AC8 2 GLY A 30 ARG A 351 SITE 1 AC9 2 THR A 77 ARG A 79 SITE 1 AD1 4 ASP A 454 ALA A 458 HOH A 617 HOH A 934 SITE 1 AD2 5 ARG A 108 GLN A 109 SER A 416 HOH A 691 SITE 2 AD2 5 HOH A 760 SITE 1 AD3 7 ARG A 173 HOH A 639 HOH A 646 HOH A 663 SITE 2 AD3 7 HOH A 837 HOH A 884 HOH A 975 SITE 1 AD4 5 ASP A 388 HOH A 676 HOH A 732 HOH A 916 SITE 2 AD4 5 HOH A 931 CRYST1 171.180 171.180 95.150 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005842 0.003373 0.000000 0.00000 SCALE2 0.000000 0.006746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010510 0.00000