HEADER MEMBRANE PROTEIN 30-JAN-16 5HXC TITLE STRUCTURAL MECHANISMS OF EXTRACELLULAR ION EXCHANGE AND INDUCED TITLE 2 BINDING-SITE OCCLUSION IN THE SODIUM-CALCIUM EXCHANGER NCX_MJ SOAKED TITLE 3 WITH 20 MM NA+ AND ZERO CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM,CALCIUM EXCHANGER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 6 GENE: MJ0091; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NA+/CA2+ EXCHANGE, CALCIUM SIGNALLING, MEMBRANE TRANSPORTER, INDUCED KEYWDS 2 CONFORMATIONAL CHANGE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIAO,Y.X.JIANG,J.D.FARALDO-GOMEZ REVDAT 5 08-NOV-23 5HXC 1 REMARK REVDAT 4 23-MAR-22 5HXC 1 LINK REVDAT 3 18-OCT-17 5HXC 1 COMPND REMARK REVDAT 2 22-JUN-16 5HXC 1 JRNL REVDAT 1 11-MAY-16 5HXC 0 JRNL AUTH J.LIAO,F.MARINELLI,C.LEE,Y.HUANG,J.D.FARALDO-GOMEZ,Y.JIANG JRNL TITL MECHANISM OF EXTRACELLULAR ION EXCHANGE AND BINDING-SITE JRNL TITL 2 OCCLUSION IN A SODIUM/CALCIUM EXCHANGER JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 590 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27183196 JRNL DOI 10.1038/NSMB.3230 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.LIAO,H.LI,W.ZENG,D.B.SAUER,R.BELMARES,Y.JIANG REMARK 1 TITL STRUCTURAL INSIGHT INTO THE ION-EXCHANGE MECHANISM OF THE REMARK 1 TITL 2 SODIUM/CALCIUM EXCHANGER. REMARK 1 REF SCIENCE V. 335 686 2012 REMARK 1 REFN ESSN 1095-9203 REMARK 1 PMID 22323814 REMARK 1 DOI 10.1126/SCIENCE.1215759 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7240 - 5.0599 1.00 1458 154 0.2187 0.2474 REMARK 3 2 5.0599 - 4.0177 1.00 1371 147 0.1826 0.2207 REMARK 3 3 4.0177 - 3.5102 1.00 1369 146 0.1750 0.2267 REMARK 3 4 3.5102 - 3.1895 1.00 1352 144 0.1817 0.2136 REMARK 3 5 3.1895 - 2.9610 1.00 1354 145 0.1654 0.1983 REMARK 3 6 2.9610 - 2.7864 1.00 1322 140 0.1650 0.2085 REMARK 3 7 2.7864 - 2.6469 1.00 1342 144 0.1619 0.2244 REMARK 3 8 2.6469 - 2.5317 1.00 1338 142 0.1546 0.2055 REMARK 3 9 2.5317 - 2.4343 1.00 1332 142 0.1680 0.2150 REMARK 3 10 2.4343 - 2.3503 1.00 1311 139 0.1790 0.2468 REMARK 3 11 2.3503 - 2.2768 1.00 1322 141 0.1857 0.2804 REMARK 3 12 2.2768 - 2.2118 1.00 1335 143 0.2088 0.2564 REMARK 3 13 2.2118 - 2.1535 1.00 1304 140 0.2326 0.2942 REMARK 3 14 2.1535 - 2.1010 0.92 1231 131 0.2507 0.2966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2564 REMARK 3 ANGLE : 1.269 3431 REMARK 3 CHIRALITY : 0.037 409 REMARK 3 PLANARITY : 0.005 400 REMARK 3 DIHEDRAL : 10.397 941 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: 3V5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.87700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.88750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.88750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.87700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 152 REMARK 465 ASN A 153 REMARK 465 ASN A 154 REMARK 465 ASP A 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 537 O HOH A 551 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 44 -84.43 -115.25 REMARK 500 ALA A 148 78.93 -115.46 REMARK 500 ILE A 150 -45.55 -132.94 REMARK 500 ASN A 157 55.14 178.75 REMARK 500 SER A 278 -127.95 -144.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 406 REMARK 610 1PE A 407 REMARK 610 MYC A 408 REMARK 610 MYC A 409 REMARK 610 MYC A 410 REMARK 610 MYC A 413 REMARK 610 MYC A 414 REMARK 610 MYC A 416 REMARK 610 MYC A 417 REMARK 610 OLC A 418 REMARK 610 OLC A 419 REMARK 610 OLC A 420 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 47 O REMARK 620 2 THR A 50 OG1 86.0 REMARK 620 3 SER A 51 OG 83.1 148.7 REMARK 620 4 GLU A 213 OE2 155.7 92.5 85.8 REMARK 620 5 SER A 236 OG 105.2 102.0 109.1 98.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 50 O REMARK 620 2 GLU A 54 OE1 95.7 REMARK 620 3 GLU A 54 OE2 144.6 54.2 REMARK 620 4 THR A 209 O 120.8 98.6 85.4 REMARK 620 5 THR A 209 O 120.4 97.1 85.0 1.7 REMARK 620 6 GLU A 213 OE1 97.2 153.2 104.3 94.8 96.4 REMARK 620 7 GLU A 213 OE2 81.6 106.7 89.5 144.4 146.0 52.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 SER A 77 OG 100.0 REMARK 620 3 ALA A 206 O 160.2 96.7 REMARK 620 4 THR A 209 OG1 103.7 108.2 80.8 REMARK 620 5 THR A 209 OG1 111.8 110.6 71.5 9.5 REMARK 620 6 SER A 210 OG 90.6 103.6 75.1 141.8 134.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 118 O REMARK 620 2 ASP A 121 OD1 78.6 REMARK 620 3 GLY A 122 O 88.8 85.1 REMARK 620 4 ASP A 127 OD2 106.8 174.2 92.8 REMARK 620 5 OLC A 418 O25 84.3 103.6 167.5 79.3 REMARK 620 6 HOH A 543 O 159.5 95.5 110.4 80.1 78.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYC A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HYA RELATED DB: PDB REMARK 900 RELATED ID: 5HXE RELATED DB: PDB REMARK 900 RELATED ID: 5HXH RELATED DB: PDB REMARK 900 RELATED ID: 5HXR RELATED DB: PDB REMARK 900 RELATED ID: 5HXS RELATED DB: PDB REMARK 900 RELATED ID: 5HWX RELATED DB: PDB REMARK 900 RELATED ID: 5HWY RELATED DB: PDB DBREF 5HXC A 1 302 UNP Q57556 Y091_METJA 1 302 SEQADV 5HXC VAL A 2 UNP Q57556 LEU 2 ENGINEERED MUTATION SEQADV 5HXC GLY A 303 UNP Q57556 EXPRESSION TAG SEQADV 5HXC GLY A 304 UNP Q57556 EXPRESSION TAG SEQRES 1 A 304 MET VAL ILE LEU GLY VAL GLY TYR PHE LEU LEU GLY LEU SEQRES 2 A 304 ILE LEU LEU TYR TYR GLY SER ASP TRP PHE VAL LEU GLY SEQRES 3 A 304 SER GLU ARG ILE ALA ARG HIS PHE ASN VAL SER ASN PHE SEQRES 4 A 304 VAL ILE GLY ALA THR VAL MET ALA ILE GLY THR SER LEU SEQRES 5 A 304 PRO GLU ILE LEU THR SER ALA TYR ALA SER TYR MET HIS SEQRES 6 A 304 ALA PRO GLY ILE SER ILE GLY ASN ALA ILE GLY SER CYS SEQRES 7 A 304 ILE CYS ASN ILE GLY LEU VAL LEU GLY LEU SER ALA ILE SEQRES 8 A 304 ILE SER PRO ILE ILE VAL ASP LYS ASN LEU GLN LYS ASN SEQRES 9 A 304 ILE LEU VAL TYR LEU LEU PHE VAL ILE PHE ALA ALA VAL SEQRES 10 A 304 ILE GLY ILE ASP GLY PHE SER TRP ILE ASP GLY VAL VAL SEQRES 11 A 304 LEU LEU ILE LEU PHE ILE ILE TYR LEU ARG TRP THR VAL SEQRES 12 A 304 LYS ASN GLY SER ALA GLU ILE GLU GLU ASN ASN ASP LYS SEQRES 13 A 304 ASN ASN PRO SER VAL VAL PHE SER LEU VAL LEU LEU ILE SEQRES 14 A 304 ILE GLY LEU ILE GLY VAL LEU VAL GLY ALA GLU LEU PHE SEQRES 15 A 304 VAL ASP GLY ALA LYS LYS ILE ALA LEU ALA LEU ASP ILE SEQRES 16 A 304 SER ASP LYS VAL ILE GLY PHE THR LEU VAL ALA PHE GLY SEQRES 17 A 304 THR SER LEU PRO GLU LEU MET VAL SER LEU ALA ALA ALA SEQRES 18 A 304 LYS ARG ASN LEU GLY GLY MET VAL LEU GLY ASN VAL ILE SEQRES 19 A 304 GLY SER ASN ILE ALA ASP ILE GLY GLY ALA LEU ALA VAL SEQRES 20 A 304 GLY SER LEU PHE MET HIS LEU PRO ALA GLU ASN VAL GLN SEQRES 21 A 304 MET ALA VAL LEU VAL ILE MET SER LEU LEU LEU TYR LEU SEQRES 22 A 304 PHE ALA LYS TYR SER LYS ILE GLY ARG TRP GLN GLY ILE SEQRES 23 A 304 LEU PHE LEU ALA LEU TYR ILE ILE ALA ILE ALA SER LEU SEQRES 24 A 304 ARG MET GLY GLY GLY HET CA A 401 1 HET CA A 402 1 HET NA A 403 1 HET NA A 404 1 HET NA A 405 1 HET 1PE A 406 13 HET 1PE A 407 6 HET MYC A 408 11 HET MYC A 409 6 HET MYC A 410 6 HET MYS A 411 15 HET MYS A 412 15 HET MYC A 413 11 HET MYC A 414 12 HET MYS A 415 15 HET MYC A 416 7 HET MYC A 417 5 HET OLC A 418 24 HET OLC A 419 9 HET OLC A 420 6 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM MYC 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN- HETNAM 2 MYC 4-ONE HETNAM MYS PENTADECANE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN 1PE PEG400 HETSYN MYC 2-(3,4,5-TRIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-4H-1- HETSYN 2 MYC BENZOPYRAN-4-ONE; 3,3',4',5,5',7-HEXAHYDROXYFLAVONE; HETSYN 3 MYC MYRICETIN; CANNABISCETIN HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 CA 2(CA 2+) FORMUL 4 NA 3(NA 1+) FORMUL 7 1PE 2(C10 H22 O6) FORMUL 9 MYC 7(C15 H10 O8) FORMUL 12 MYS 3(C15 H32) FORMUL 19 OLC 3(C21 H40 O4) FORMUL 22 HOH *68(H2 O) HELIX 1 AA1 MET A 1 ASN A 35 1 35 HELIX 2 AA2 SER A 37 THR A 44 1 8 HELIX 3 AA3 THR A 44 MET A 64 1 21 HELIX 4 AA4 ALA A 66 LEU A 84 1 19 HELIX 5 AA5 LEU A 84 SER A 93 1 10 HELIX 6 AA6 ASP A 98 GLY A 119 1 22 HELIX 7 AA7 SER A 124 GLY A 146 1 23 HELIX 8 AA8 ASN A 158 LEU A 193 1 36 HELIX 9 AA9 ASP A 197 LEU A 204 1 8 HELIX 10 AB1 LEU A 204 THR A 209 1 6 HELIX 11 AB2 SER A 210 ARG A 223 1 14 HELIX 12 AB3 LEU A 225 GLY A 243 1 19 HELIX 13 AB4 GLY A 243 MET A 252 1 10 HELIX 14 AB5 GLU A 257 SER A 278 1 22 HELIX 15 AB6 GLY A 281 LEU A 299 1 19 LINK O ALA A 47 NA NA A 403 1555 1555 2.35 LINK OG1 THR A 50 NA NA A 403 1555 1555 2.33 LINK O THR A 50 NA NA A 405 1555 1555 2.33 LINK OG SER A 51 NA NA A 403 1555 1555 2.48 LINK OE2 GLU A 54 NA NA A 404 1555 1555 2.22 LINK OE1 GLU A 54 NA NA A 405 1555 1555 2.27 LINK OE2 GLU A 54 NA NA A 405 1555 1555 2.50 LINK OG SER A 77 NA NA A 404 1555 1555 2.20 LINK O ILE A 118 CA CA A 401 1555 1555 2.38 LINK OD1 ASP A 121 CA CA A 401 1555 1555 2.40 LINK O GLY A 122 CA CA A 401 1555 1555 2.36 LINK OD2 ASP A 127 CA CA A 401 1555 1555 2.62 LINK O AALA A 206 NA NA A 404 1555 1555 2.30 LINK OG1ATHR A 209 NA NA A 404 1555 1555 2.40 LINK OG1BTHR A 209 NA NA A 404 1555 1555 2.48 LINK O ATHR A 209 NA NA A 405 1555 1555 2.22 LINK O BTHR A 209 NA NA A 405 1555 1555 2.25 LINK OG ASER A 210 NA NA A 404 1555 1555 2.61 LINK OE2 GLU A 213 NA NA A 403 1555 1555 2.32 LINK OE1 GLU A 213 NA NA A 405 1555 1555 2.32 LINK OE2 GLU A 213 NA NA A 405 1555 1555 2.60 LINK OG SER A 236 NA NA A 403 1555 1555 2.34 LINK CA CA A 401 O25 OLC A 418 1555 1555 2.54 LINK CA CA A 401 O HOH A 543 1555 1555 2.42 SITE 1 AC1 6 ILE A 118 ASP A 121 GLY A 122 ASP A 127 SITE 2 AC1 6 OLC A 418 HOH A 543 SITE 1 AC2 2 HIS A 33 LYS A 279 SITE 1 AC3 5 ALA A 47 THR A 50 SER A 51 GLU A 213 SITE 2 AC3 5 SER A 236 SITE 1 AC4 5 GLU A 54 SER A 77 ALA A 206 THR A 209 SITE 2 AC4 5 SER A 210 SITE 1 AC5 4 THR A 50 GLU A 54 THR A 209 GLU A 213 SITE 1 AC6 7 TYR A 17 SER A 20 MET A 215 LEU A 218 SITE 2 AC6 7 ALA A 219 LYS A 222 HOH A 508 SITE 1 AC7 4 THR A 203 PHE A 207 TYR A 292 HOH A 533 SITE 1 AC8 1 ASN A 258 SITE 1 AC9 1 LEU A 109 SITE 1 AD1 1 OLC A 418 SITE 1 AD2 2 ILE A 266 SER A 298 SITE 1 AD3 5 ILE A 150 SER A 278 TRP A 283 GLN A 284 SITE 2 AD3 5 ILE A 286 SITE 1 AD4 1 THR A 44 SITE 1 AD5 3 ARG A 140 ALA A 297 SER A 298 SITE 1 AD6 6 TRP A 125 LEU A 132 LEU A 250 ARG A 282 SITE 2 AD6 6 LEU A 289 ILE A 293 SITE 1 AD7 1 TYR A 60 SITE 1 AD8 9 PHE A 114 VAL A 117 ILE A 118 ASP A 121 SITE 2 AD8 9 ASP A 127 ALA A 186 CA A 401 MYC A 410 SITE 3 AD8 9 OLC A 420 SITE 1 AD9 2 PRO A 53 GLU A 180 SITE 1 AE1 3 PHE A 114 ASP A 127 OLC A 418 CRYST1 49.754 72.560 95.775 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010441 0.00000