HEADER TRANSFERASE 31-JAN-16 5HXT TITLE CRYSTAL STRUCTURE OF Z,Z-FARNESYL DIPHOSPHATE SYNTHASE (D71M, E75A AND TITLE 2 H103Y MUTANTS) COMPLEXED WITH IPP AND DMSPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: (2Z,6Z)-FARNESYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 72-303; COMPND 5 SYNONYM: Z,Z-FPP SYNTHASE,Z-FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 6 EC: 2.5.1.92; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM HABROCHAITES; SOURCE 3 ORGANISM_COMMON: WILD TOMATO; SOURCE 4 ORGANISM_TAXID: 62890; SOURCE 5 GENE: ZFPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32 XA/LIC KEYWDS PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,Y.T.CHAN,A.H.J.WANG REVDAT 3 08-NOV-23 5HXT 1 HETSYN LINK REVDAT 2 16-OCT-19 5HXT 1 COMPND JRNL FORMUL REVDAT 1 05-APR-17 5HXT 0 JRNL AUTH Y.T.CHAN,T.P.KO,S.H.YAO,Y.W.CHEN,C.C.LEE,A.H.J.WANG JRNL TITL CRYSTAL STRUCTURE AND POTENTIAL HEAD-TO-MIDDLE CONDENSATION JRNL TITL 2 FUNCTION OF A Z,Z-FARNESYL DIPHOSPHATE SYNTHASE JRNL REF ACS OMEGA V. 2 930 2017 JRNL REFN ESSN 2470-1343 JRNL DOI 10.1021/ACSOMEGA.6B00562 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 25736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1405 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3746 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3618 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5045 ; 1.185 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8338 ; 1.002 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 5.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;38.666 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 692 ;14.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4129 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 845 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1786 ; 1.278 ; 2.745 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1785 ; 1.276 ; 2.743 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2229 ; 2.191 ; 4.108 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2230 ; 2.190 ; 4.110 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1960 ; 1.465 ; 3.019 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1961 ; 1.465 ; 3.020 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2817 ; 2.493 ; 4.426 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4401 ; 4.798 ;22.150 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4402 ; 4.797 ;22.159 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5HXN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 10K, 20MM 18-CROWN-6, 0.1M REMARK 280 MES, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.99050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.46950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.16050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.46950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.99050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.16050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 71 REMARK 465 LEU A 72 REMARK 465 ASP A 73 REMARK 465 GLU A 74 REMARK 465 ALA A 75 REMARK 465 ARG A 297 REMARK 465 PHE A 298 REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 465 HIS A 301 REMARK 465 THR A 302 REMARK 465 TYR A 303 REMARK 465 ARG B 297 REMARK 465 PHE B 298 REMARK 465 GLY B 299 REMARK 465 GLY B 300 REMARK 465 HIS B 301 REMARK 465 THR B 302 REMARK 465 TYR B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 268 O HOH B 501 2.09 REMARK 500 OH TYR A 204 O HOH A 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 130 119.64 -163.32 REMARK 500 GLN A 254 77.45 -112.21 REMARK 500 PHE A 259 -127.37 -86.81 REMARK 500 GLN B 254 71.21 -116.26 REMARK 500 PHE B 259 -130.44 -86.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 655 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 658 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 659 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A 662 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A 663 DISTANCE = 9.14 ANGSTROMS REMARK 525 HOH A 664 DISTANCE = 9.39 ANGSTROMS REMARK 525 HOH A 665 DISTANCE = 9.50 ANGSTROMS REMARK 525 HOH B 642 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 643 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B 644 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 645 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 646 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 647 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 648 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH B 649 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B 650 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH B 651 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH B 652 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH B 653 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH B 654 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH B 655 DISTANCE = 8.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 DST A 402 O5 66.5 REMARK 620 3 DST A 402 O7 87.2 86.5 REMARK 620 4 IPR A 403 O9 94.5 160.9 91.6 REMARK 620 5 HOH A 548 O 95.3 103.4 170.0 78.5 REMARK 620 6 HOH A 579 O 173.7 108.1 95.9 91.0 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 86 OD1 REMARK 620 2 DST B 402 O4 71.3 REMARK 620 3 DST B 402 O8 74.3 74.9 REMARK 620 4 IPR B 403 O13 118.6 148.6 135.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HXN RELATED DB: PDB REMARK 900 RELATED ID: 5HXO RELATED DB: PDB REMARK 900 RELATED ID: 5HXP RELATED DB: PDB REMARK 900 RELATED ID: 5HXQ RELATED DB: PDB DBREF 5HXT A 72 303 UNP B8XA40 ZFPS_SOLHA 72 303 DBREF 5HXT B 72 303 UNP B8XA40 ZFPS_SOLHA 72 303 SEQADV 5HXT MET A 71 UNP B8XA40 INITIATING METHIONINE SEQADV 5HXT ALA A 75 UNP B8XA40 GLU 75 ENGINEERED MUTATION SEQADV 5HXT TYR A 103 UNP B8XA40 HIS 103 ENGINEERED MUTATION SEQADV 5HXT MET B 71 UNP B8XA40 INITIATING METHIONINE SEQADV 5HXT ALA B 75 UNP B8XA40 GLU 75 ENGINEERED MUTATION SEQADV 5HXT TYR B 103 UNP B8XA40 HIS 103 ENGINEERED MUTATION SEQRES 1 A 233 MET LEU ASP GLU ALA LEU MET PRO LYS HIS ILE ALA LEU SEQRES 2 A 233 ILE MET ASP GLY ASN ARG ARG TRP ALA LYS ASP LYS GLY SEQRES 3 A 233 LEU ASP VAL SER GLU GLY TYR LYS HIS LEU PHE PRO LYS SEQRES 4 A 233 LEU LYS GLU ILE CYS ASP ILE SER SER LYS LEU GLY ILE SEQRES 5 A 233 GLN VAL ILE THR ALA PHE ALA PHE SER THR GLU ASN TRP SEQRES 6 A 233 LYS ARG ALA LYS GLY GLU VAL ASP PHE LEU MET GLN MET SEQRES 7 A 233 PHE GLU GLU LEU TYR ASP GLU PHE SER ARG SER GLY VAL SEQRES 8 A 233 ARG VAL SER ILE ILE GLY CYS LYS THR ASP LEU PRO MET SEQRES 9 A 233 THR LEU GLN LYS CYS ILE ALA LEU THR GLU GLU THR THR SEQRES 10 A 233 LYS GLY ASN LYS GLY LEU HIS LEU VAL ILE ALA LEU ASN SEQRES 11 A 233 TYR GLY GLY TYR TYR ASP ILE LEU GLN ALA THR LYS SER SEQRES 12 A 233 ILE VAL ASN LYS ALA MET ASN GLY LEU LEU ASP VAL GLU SEQRES 13 A 233 ASP ILE ASN LYS ASN LEU PHE ASP GLN GLU LEU GLU SER SEQRES 14 A 233 LYS CYS PRO ASN PRO ASP LEU LEU ILE ARG THR GLY GLY SEQRES 15 A 233 ASP GLN ARG VAL SER ASN PHE LEU LEU TRP GLN LEU ALA SEQRES 16 A 233 TYR THR GLU PHE TYR PHE THR LYS THR LEU PHE PRO ASP SEQRES 17 A 233 PHE GLY GLU GLU ASP LEU LYS GLU ALA ILE ILE ASN PHE SEQRES 18 A 233 GLN GLN ARG HIS ARG ARG PHE GLY GLY HIS THR TYR SEQRES 1 B 233 MET LEU ASP GLU ALA LEU MET PRO LYS HIS ILE ALA LEU SEQRES 2 B 233 ILE MET ASP GLY ASN ARG ARG TRP ALA LYS ASP LYS GLY SEQRES 3 B 233 LEU ASP VAL SER GLU GLY TYR LYS HIS LEU PHE PRO LYS SEQRES 4 B 233 LEU LYS GLU ILE CYS ASP ILE SER SER LYS LEU GLY ILE SEQRES 5 B 233 GLN VAL ILE THR ALA PHE ALA PHE SER THR GLU ASN TRP SEQRES 6 B 233 LYS ARG ALA LYS GLY GLU VAL ASP PHE LEU MET GLN MET SEQRES 7 B 233 PHE GLU GLU LEU TYR ASP GLU PHE SER ARG SER GLY VAL SEQRES 8 B 233 ARG VAL SER ILE ILE GLY CYS LYS THR ASP LEU PRO MET SEQRES 9 B 233 THR LEU GLN LYS CYS ILE ALA LEU THR GLU GLU THR THR SEQRES 10 B 233 LYS GLY ASN LYS GLY LEU HIS LEU VAL ILE ALA LEU ASN SEQRES 11 B 233 TYR GLY GLY TYR TYR ASP ILE LEU GLN ALA THR LYS SER SEQRES 12 B 233 ILE VAL ASN LYS ALA MET ASN GLY LEU LEU ASP VAL GLU SEQRES 13 B 233 ASP ILE ASN LYS ASN LEU PHE ASP GLN GLU LEU GLU SER SEQRES 14 B 233 LYS CYS PRO ASN PRO ASP LEU LEU ILE ARG THR GLY GLY SEQRES 15 B 233 ASP GLN ARG VAL SER ASN PHE LEU LEU TRP GLN LEU ALA SEQRES 16 B 233 TYR THR GLU PHE TYR PHE THR LYS THR LEU PHE PRO ASP SEQRES 17 B 233 PHE GLY GLU GLU ASP LEU LYS GLU ALA ILE ILE ASN PHE SEQRES 18 B 233 GLN GLN ARG HIS ARG ARG PHE GLY GLY HIS THR TYR HET MG A 401 1 HET DST A 402 14 HET IPR A 403 18 HET MG B 401 1 HET DST B 402 14 HET IPR B 403 14 HET O4B B 404 18 HETNAM MG MAGNESIUM ION HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETNAM IPR ISOPENTYL PYROPHOSPHATE HETNAM O4B 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 DST 2(C5 H12 O6 P2 S) FORMUL 5 IPR 2(C5 H14 O7 P2) FORMUL 9 O4B C12 H24 O6 FORMUL 10 HOH *320(H2 O) HELIX 1 AA1 GLY A 87 GLY A 96 1 10 HELIX 2 AA2 ASP A 98 HIS A 105 1 8 HELIX 3 AA3 HIS A 105 LEU A 120 1 16 HELIX 4 AA4 GLU A 133 ARG A 137 5 5 HELIX 5 AA5 ALA A 138 PHE A 149 1 12 HELIX 6 AA6 GLU A 151 SER A 157 1 7 HELIX 7 AA7 CYS A 168 LEU A 172 5 5 HELIX 8 AA8 PRO A 173 LYS A 188 1 16 HELIX 9 AA9 GLY A 202 ASN A 220 1 19 HELIX 10 AB1 ASP A 224 ILE A 228 5 5 HELIX 11 AB2 ASN A 229 LEU A 237 1 9 HELIX 12 AB3 LEU A 261 ALA A 265 5 5 HELIX 13 AB4 LEU A 275 PHE A 279 5 5 HELIX 14 AB5 GLY A 280 GLN A 293 1 14 HELIX 15 AB6 ASP B 73 MET B 77 5 5 HELIX 16 AB7 GLY B 87 ASP B 94 1 8 HELIX 17 AB8 ASP B 98 LYS B 104 1 7 HELIX 18 AB9 HIS B 105 GLY B 121 1 17 HELIX 19 AC1 GLU B 133 ARG B 137 5 5 HELIX 20 AC2 ALA B 138 GLU B 150 1 13 HELIX 21 AC3 GLU B 151 SER B 157 1 7 HELIX 22 AC4 CYS B 168 LEU B 172 5 5 HELIX 23 AC5 PRO B 173 LYS B 188 1 16 HELIX 24 AC6 GLY B 202 ASN B 220 1 19 HELIX 25 AC7 ASP B 224 ILE B 228 5 5 HELIX 26 AC8 ASN B 229 LEU B 237 1 9 HELIX 27 AC9 LEU B 261 ALA B 265 5 5 HELIX 28 AD1 LEU B 275 PHE B 279 5 5 HELIX 29 AD2 GLY B 280 ARG B 294 1 15 SHEET 1 AA1 6 ARG A 162 ILE A 166 0 SHEET 2 AA1 6 HIS A 194 TYR A 201 1 O ILE A 197 N SER A 164 SHEET 3 AA1 6 VAL A 124 SER A 131 1 N ILE A 125 O VAL A 196 SHEET 4 AA1 6 HIS A 80 ILE A 84 1 N LEU A 83 O THR A 126 SHEET 5 AA1 6 LEU A 246 ARG A 249 1 O LEU A 246 N ALA A 82 SHEET 6 AA1 6 GLU A 268 PHE A 271 1 O GLU A 268 N LEU A 247 SHEET 1 AA2 6 ARG B 162 ILE B 166 0 SHEET 2 AA2 6 HIS B 194 TYR B 201 1 O ILE B 197 N SER B 164 SHEET 3 AA2 6 VAL B 124 SER B 131 1 N ILE B 125 O VAL B 196 SHEET 4 AA2 6 HIS B 80 ILE B 84 1 N LEU B 83 O PHE B 128 SHEET 5 AA2 6 LEU B 246 ARG B 249 1 O ILE B 248 N ILE B 84 SHEET 6 AA2 6 GLU B 268 PHE B 271 1 O GLU B 268 N LEU B 247 LINK OD1 ASP A 86 MG MG A 401 1555 1555 2.30 LINK MG MG A 401 O5 DST A 402 1555 1555 2.00 LINK MG MG A 401 O7 DST A 402 1555 1555 2.10 LINK MG MG A 401 O9 IPR A 403 1555 1555 2.59 LINK MG MG A 401 O HOH A 548 1555 1555 2.33 LINK MG MG A 401 O HOH A 579 1555 1555 2.18 LINK OD1 ASP B 86 MG MG B 401 1555 1555 2.37 LINK MG MG B 401 O4 DST B 402 1555 1555 2.13 LINK MG MG B 401 O8 DST B 402 1555 1555 2.31 LINK MG MG B 401 O13 IPR B 403 1555 1555 2.82 CISPEP 1 CYS A 241 PRO A 242 0 -2.52 CISPEP 2 CYS B 241 PRO B 242 0 -4.49 SITE 1 AC1 5 ASP A 86 DST A 402 IPR A 403 HOH A 548 SITE 2 AC1 5 HOH A 579 SITE 1 AC2 14 MET A 85 ASP A 86 GLY A 87 ASN A 88 SITE 2 AC2 14 ARG A 89 ARG A 90 TYR A 103 ALA A 129 SITE 3 AC2 14 ASN A 134 ARG A 137 MG A 401 IPR A 403 SITE 4 AC2 14 HOH A 572 HOH A 579 SITE 1 AC3 14 ASP A 86 PHE A 128 SER A 131 ASN A 134 SITE 2 AC3 14 ARG A 137 ARG A 249 ARG A 255 SER A 257 SITE 3 AC3 14 MG A 401 DST A 402 HOH A 513 HOH A 521 SITE 4 AC3 14 HOH A 529 TYR B 266 SITE 1 AC4 3 ASP B 86 DST B 402 IPR B 403 SITE 1 AC5 11 MET B 85 ASP B 86 GLY B 87 ASN B 88 SITE 2 AC5 11 ARG B 89 ARG B 90 TYR B 103 ALA B 129 SITE 3 AC5 11 ARG B 137 MG B 401 IPR B 403 SITE 1 AC6 9 PHE B 128 SER B 131 ASN B 134 ARG B 137 SITE 2 AC6 9 ARG B 249 ARG B 255 SER B 257 MG B 401 SITE 3 AC6 9 DST B 402 SITE 1 AC7 5 TYR A 153 LEU A 182 MET B 174 GLN B 177 SITE 2 AC7 5 LYS B 178 CRYST1 59.981 66.321 128.939 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007756 0.00000