HEADER TRANSFERASE 31-JAN-16 5HXX TITLE CRYSTAL STRUCTURE OF ASPAT FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / SOURCE 3 DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025); SOURCE 4 ORGANISM_TAXID: 196627; SOURCE 5 STRAIN: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025; SOURCE 6 ATCC: 13032; SOURCE 7 GENE: ASPB, CG0294; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-F.SON,K.-J.KIM REVDAT 2 08-NOV-23 5HXX 1 REMARK REVDAT 1 24-FEB-16 5HXX 0 JRNL AUTH H.-F.SON,K.-J.KIM JRNL TITL STRUCTURAL INSIGHTS INTO A NOVEL CLASS OF ASPARTATE JRNL TITL 2 AMINOTRANSFERASE FROM CORYNEBACTERIUM GLUTAMICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 56893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3050 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.1460 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 781 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6756 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6341 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9177 ; 1.842 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14594 ; 1.058 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 845 ; 6.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;36.093 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1063 ;12.415 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;14.313 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1005 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7689 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1522 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3389 ; 1.231 ; 1.241 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3388 ; 1.203 ; 1.241 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4231 ; 1.835 ; 1.849 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 5HXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 165.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-2000 REMARK 200 STARTING MODEL: 3D6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM CITRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.69400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.76050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.69400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.76050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 237 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 314 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 143 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 237 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 277 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 301 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 301 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 314 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 314 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 16.83 -142.36 REMARK 500 ASP A 101 -154.89 -85.89 REMARK 500 HIS A 226 59.01 -102.52 REMARK 500 THR A 229 -169.13 -112.45 REMARK 500 ASN A 247 62.19 -119.34 REMARK 500 THR A 261 -81.83 -112.46 REMARK 500 PHE B 62 18.82 -146.85 REMARK 500 ASP B 101 -152.77 -82.99 REMARK 500 ASP B 167 98.93 -59.76 REMARK 500 HIS B 226 55.24 -100.15 REMARK 500 ASP B 230 0.99 81.38 REMARK 500 THR B 261 -84.77 -117.75 REMARK 500 LEU B 384 19.32 59.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 974 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B1007 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 501 and GLU B REMARK 800 502 DBREF1 5HXX A 1 426 UNP A0A0J9X1V2_CORGL DBREF2 5HXX A A0A0J9X1V2 1 426 DBREF1 5HXX B 1 426 UNP A0A0J9X1V2_CORGL DBREF2 5HXX B A0A0J9X1V2 1 426 SEQADV 5HXX HIS A 427 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS A 428 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS A 429 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS A 430 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS A 431 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS A 432 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS B 427 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS B 428 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS B 429 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS B 430 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS B 431 UNP A0A0J9X1V EXPRESSION TAG SEQADV 5HXX HIS B 432 UNP A0A0J9X1V EXPRESSION TAG SEQRES 1 A 432 MET SER SER VAL SER LEU GLN ASP PHE ASP ALA GLU ARG SEQRES 2 A 432 ILE GLY LEU PHE HIS GLU ASP ILE LYS ARG LYS PHE ASP SEQRES 3 A 432 GLU LEU LYS SER LYS ASN LEU LYS LEU ASP LEU THR ARG SEQRES 4 A 432 GLY LYS PRO SER SER GLU GLN LEU ASP PHE ALA ASP GLU SEQRES 5 A 432 LEU LEU ALA LEU PRO GLY LYS GLY ASP PHE LYS ALA ALA SEQRES 6 A 432 ASP GLY THR ASP VAL ARG ASN TYR GLY GLY LEU ASP GLY SEQRES 7 A 432 ILE VAL ASP ILE ARG GLN ILE TRP ALA ASP LEU LEU GLY SEQRES 8 A 432 VAL PRO VAL GLU GLN VAL LEU ALA GLY ASP ALA SER SER SEQRES 9 A 432 LEU ASN ILE MET PHE ASP VAL ILE SER TRP SER TYR ILE SEQRES 10 A 432 PHE GLY ASN ASN ASP SER VAL GLN PRO TRP SER LYS GLU SEQRES 11 A 432 GLU THR VAL LYS TRP ILE CYS PRO VAL PRO GLY TYR ASP SEQRES 12 A 432 ARG HIS PHE SER ILE THR GLU ARG PHE GLY PHE GLU MET SEQRES 13 A 432 ILE SER VAL PRO MET ASN GLU ASP GLY PRO ASP MET ASP SEQRES 14 A 432 ALA VAL GLU GLU LEU VAL LYS ASN PRO GLN VAL LYS GLY SEQRES 15 A 432 MET TRP VAL VAL PRO VAL PHE SER ASN PRO THR GLY PHE SEQRES 16 A 432 THR VAL THR GLU ASP VAL ALA LYS ARG LEU SER ALA MET SEQRES 17 A 432 GLU THR ALA ALA PRO ASP PHE ARG VAL VAL TRP ASP ASN SEQRES 18 A 432 ALA TYR ALA VAL HIS THR LEU THR ASP GLU PHE PRO GLU SEQRES 19 A 432 VAL ILE ASP ILE VAL GLY LEU GLY GLU ALA ALA GLY ASN SEQRES 20 A 432 PRO ASN ARG PHE TRP ALA PHE THR SER THR SER LYS ILE SEQRES 21 A 432 THR LEU ALA GLY ALA GLY VAL SER PHE PHE LEU THR SER SEQRES 22 A 432 ALA GLU ASN ARG LYS TRP TYR THR GLY HIS ALA GLY ILE SEQRES 23 A 432 ARG GLY ILE GLY PRO ASN LYS VAL ASN GLN LEU ALA HIS SEQRES 24 A 432 ALA ARG TYR PHE GLY ASP ALA GLU GLY VAL ARG ALA VAL SEQRES 25 A 432 MET ARG LYS HIS ALA ALA SER LEU ALA PRO LYS PHE ASN SEQRES 26 A 432 LYS VAL LEU GLU ILE LEU ASP SER ARG LEU ALA GLU TYR SEQRES 27 A 432 GLY VAL ALA GLN TRP THR VAL PRO ALA GLY GLY TYR PHE SEQRES 28 A 432 ILE SER LEU ASP VAL VAL PRO GLY THR ALA SER ARG VAL SEQRES 29 A 432 ALA GLU LEU ALA LYS GLU ALA GLY ILE ALA LEU THR GLY SEQRES 30 A 432 ALA GLY SER SER TYR PRO LEU ARG GLN ASP PRO GLU ASN SEQRES 31 A 432 LYS ASN LEU ARG LEU ALA PRO SER LEU PRO PRO VAL GLU SEQRES 32 A 432 GLU LEU GLU VAL ALA MET ASP GLY VAL ALA THR CYS VAL SEQRES 33 A 432 LEU LEU ALA ALA ALA GLU HIS TYR ALA ASN HIS HIS HIS SEQRES 34 A 432 HIS HIS HIS SEQRES 1 B 432 MET SER SER VAL SER LEU GLN ASP PHE ASP ALA GLU ARG SEQRES 2 B 432 ILE GLY LEU PHE HIS GLU ASP ILE LYS ARG LYS PHE ASP SEQRES 3 B 432 GLU LEU LYS SER LYS ASN LEU LYS LEU ASP LEU THR ARG SEQRES 4 B 432 GLY LYS PRO SER SER GLU GLN LEU ASP PHE ALA ASP GLU SEQRES 5 B 432 LEU LEU ALA LEU PRO GLY LYS GLY ASP PHE LYS ALA ALA SEQRES 6 B 432 ASP GLY THR ASP VAL ARG ASN TYR GLY GLY LEU ASP GLY SEQRES 7 B 432 ILE VAL ASP ILE ARG GLN ILE TRP ALA ASP LEU LEU GLY SEQRES 8 B 432 VAL PRO VAL GLU GLN VAL LEU ALA GLY ASP ALA SER SER SEQRES 9 B 432 LEU ASN ILE MET PHE ASP VAL ILE SER TRP SER TYR ILE SEQRES 10 B 432 PHE GLY ASN ASN ASP SER VAL GLN PRO TRP SER LYS GLU SEQRES 11 B 432 GLU THR VAL LYS TRP ILE CYS PRO VAL PRO GLY TYR ASP SEQRES 12 B 432 ARG HIS PHE SER ILE THR GLU ARG PHE GLY PHE GLU MET SEQRES 13 B 432 ILE SER VAL PRO MET ASN GLU ASP GLY PRO ASP MET ASP SEQRES 14 B 432 ALA VAL GLU GLU LEU VAL LYS ASN PRO GLN VAL LYS GLY SEQRES 15 B 432 MET TRP VAL VAL PRO VAL PHE SER ASN PRO THR GLY PHE SEQRES 16 B 432 THR VAL THR GLU ASP VAL ALA LYS ARG LEU SER ALA MET SEQRES 17 B 432 GLU THR ALA ALA PRO ASP PHE ARG VAL VAL TRP ASP ASN SEQRES 18 B 432 ALA TYR ALA VAL HIS THR LEU THR ASP GLU PHE PRO GLU SEQRES 19 B 432 VAL ILE ASP ILE VAL GLY LEU GLY GLU ALA ALA GLY ASN SEQRES 20 B 432 PRO ASN ARG PHE TRP ALA PHE THR SER THR SER LYS ILE SEQRES 21 B 432 THR LEU ALA GLY ALA GLY VAL SER PHE PHE LEU THR SER SEQRES 22 B 432 ALA GLU ASN ARG LYS TRP TYR THR GLY HIS ALA GLY ILE SEQRES 23 B 432 ARG GLY ILE GLY PRO ASN LYS VAL ASN GLN LEU ALA HIS SEQRES 24 B 432 ALA ARG TYR PHE GLY ASP ALA GLU GLY VAL ARG ALA VAL SEQRES 25 B 432 MET ARG LYS HIS ALA ALA SER LEU ALA PRO LYS PHE ASN SEQRES 26 B 432 LYS VAL LEU GLU ILE LEU ASP SER ARG LEU ALA GLU TYR SEQRES 27 B 432 GLY VAL ALA GLN TRP THR VAL PRO ALA GLY GLY TYR PHE SEQRES 28 B 432 ILE SER LEU ASP VAL VAL PRO GLY THR ALA SER ARG VAL SEQRES 29 B 432 ALA GLU LEU ALA LYS GLU ALA GLY ILE ALA LEU THR GLY SEQRES 30 B 432 ALA GLY SER SER TYR PRO LEU ARG GLN ASP PRO GLU ASN SEQRES 31 B 432 LYS ASN LEU ARG LEU ALA PRO SER LEU PRO PRO VAL GLU SEQRES 32 B 432 GLU LEU GLU VAL ALA MET ASP GLY VAL ALA THR CYS VAL SEQRES 33 B 432 LEU LEU ALA ALA ALA GLU HIS TYR ALA ASN HIS HIS HIS SEQRES 34 B 432 HIS HIS HIS HET PMP A 501 16 HET AKG A 502 10 HET GOL A 503 6 HET PLP B 501 15 HET GLU B 502 10 HET GOL B 503 6 HET GOL B 504 6 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM GOL GLYCEROL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GLU GLUTAMIC ACID HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PMP C8 H13 N2 O5 P FORMUL 4 AKG C5 H6 O5 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 PLP C8 H10 N O6 P FORMUL 7 GLU C5 H9 N O4 FORMUL 10 HOH *781(H2 O) HELIX 1 AA1 SER A 5 PHE A 9 5 5 HELIX 2 AA2 ASP A 10 LYS A 31 1 22 HELIX 3 AA3 SER A 43 PHE A 49 1 7 HELIX 4 AA4 ALA A 50 LEU A 56 5 7 HELIX 5 AA5 ILE A 79 GLY A 91 1 13 HELIX 6 AA6 PRO A 93 GLU A 95 5 3 HELIX 7 AA7 SER A 103 GLY A 119 1 17 HELIX 8 AA8 PRO A 126 GLU A 130 5 5 HELIX 9 AA9 TYR A 142 PHE A 152 1 11 HELIX 10 AB1 ASP A 167 VAL A 175 1 9 HELIX 11 AB2 THR A 198 MET A 208 1 11 HELIX 12 AB3 ASP A 237 ALA A 245 1 9 HELIX 13 AB4 SER A 273 GLY A 288 1 16 HELIX 14 AB5 ASN A 292 GLY A 304 1 13 HELIX 15 AB6 ASP A 305 ALA A 336 1 32 HELIX 16 AB7 GLU A 337 GLY A 339 5 3 HELIX 17 AB8 THR A 360 ALA A 371 1 12 HELIX 18 AB9 TYR A 382 GLN A 386 5 5 HELIX 19 AC1 PRO A 401 HIS A 427 1 27 HELIX 20 AC2 SER B 5 PHE B 9 5 5 HELIX 21 AC3 ASP B 10 LYS B 31 1 22 HELIX 22 AC4 SER B 43 PHE B 49 1 7 HELIX 23 AC5 ALA B 50 LEU B 56 5 7 HELIX 24 AC6 ILE B 79 GLY B 91 1 13 HELIX 25 AC7 PRO B 93 GLU B 95 5 3 HELIX 26 AC8 SER B 103 PHE B 118 1 16 HELIX 27 AC9 PRO B 126 GLU B 130 5 5 HELIX 28 AD1 TYR B 142 PHE B 152 1 11 HELIX 29 AD2 ASP B 167 VAL B 175 1 9 HELIX 30 AD3 THR B 198 MET B 208 1 11 HELIX 31 AD4 ASP B 237 ALA B 245 1 9 HELIX 32 AD5 SER B 273 GLY B 288 1 16 HELIX 33 AD6 ASN B 292 GLY B 304 1 13 HELIX 34 AD7 ASP B 305 ALA B 336 1 32 HELIX 35 AD8 GLU B 337 GLY B 339 5 3 HELIX 36 AD9 THR B 360 ALA B 371 1 12 HELIX 37 AE1 TYR B 382 GLN B 386 5 5 HELIX 38 AE2 PRO B 401 ASN B 426 1 26 SHEET 1 AA1 2 LEU A 35 ASP A 36 0 SHEET 2 AA1 2 ILE A 373 ALA A 374 1 O ALA A 374 N LEU A 35 SHEET 1 AA2 8 VAL A 97 ALA A 99 0 SHEET 2 AA2 8 SER A 268 LEU A 271 -1 O PHE A 270 N LEU A 98 SHEET 3 AA2 8 PHE A 251 SER A 256 -1 N ALA A 253 O LEU A 271 SHEET 4 AA2 8 ARG A 216 ASP A 220 1 N VAL A 217 O TRP A 252 SHEET 5 AA2 8 VAL A 180 VAL A 185 1 N MET A 183 O VAL A 218 SHEET 6 AA2 8 LYS A 134 VAL A 139 1 N ILE A 136 O GLY A 182 SHEET 7 AA2 8 GLU A 155 ASN A 162 1 O ILE A 157 N CYS A 137 SHEET 8 AA2 8 GLY A 165 PRO A 166 -1 O GLY A 165 N ASN A 162 SHEET 1 AA3 3 GLN A 342 TRP A 343 0 SHEET 2 AA3 3 ILE A 352 ASP A 355 -1 O ASP A 355 N GLN A 342 SHEET 3 AA3 3 ASN A 392 LEU A 395 -1 O LEU A 393 N LEU A 354 SHEET 1 AA4 2 LEU B 35 ASP B 36 0 SHEET 2 AA4 2 ILE B 373 ALA B 374 1 O ALA B 374 N LEU B 35 SHEET 1 AA5 8 VAL B 97 ALA B 99 0 SHEET 2 AA5 8 SER B 268 THR B 272 -1 O PHE B 270 N LEU B 98 SHEET 3 AA5 8 PHE B 251 SER B 256 -1 N THR B 255 O PHE B 269 SHEET 4 AA5 8 ARG B 216 ASP B 220 1 N VAL B 217 O TRP B 252 SHEET 5 AA5 8 VAL B 180 VAL B 185 1 N VAL B 185 O ASP B 220 SHEET 6 AA5 8 LYS B 134 VAL B 139 1 N ILE B 136 O GLY B 182 SHEET 7 AA5 8 GLU B 155 ASN B 162 1 O ILE B 157 N CYS B 137 SHEET 8 AA5 8 GLY B 165 PRO B 166 -1 O GLY B 165 N ASN B 162 SHEET 1 AA6 3 GLN B 342 TRP B 343 0 SHEET 2 AA6 3 ILE B 352 ASP B 355 -1 O ASP B 355 N GLN B 342 SHEET 3 AA6 3 ASN B 392 LEU B 395 -1 O LEU B 393 N LEU B 354 LINK C4A PLP B 501 N GLU B 502 1555 1555 1.39 CISPEP 1 LEU A 56 PRO A 57 0 6.78 CISPEP 2 VAL A 139 PRO A 140 0 -8.15 CISPEP 3 ASN A 191 PRO A 192 0 5.84 CISPEP 4 LEU B 56 PRO B 57 0 5.73 CISPEP 5 VAL B 139 PRO B 140 0 -7.23 CISPEP 6 ASN B 191 PRO B 192 0 6.07 SITE 1 AC1 16 SER A 103 SER A 104 LEU A 105 TYR A 142 SITE 2 AC1 16 VAL A 186 ASN A 191 ASP A 220 ALA A 222 SITE 3 AC1 16 TYR A 223 SER A 256 SER A 258 LYS A 259 SITE 4 AC1 16 AKG A 502 HOH A 625 HOH A 745 TYR B 73 SITE 1 AC2 9 GLY A 40 TYR A 142 ARG A 144 LYS A 259 SITE 2 AC2 9 PHE A 351 PMP A 501 HOH A 726 HOH A 817 SITE 3 AC2 9 TYR B 73 SITE 1 AC3 4 ARG A 13 PHE A 17 ASP A 20 VAL A 345 SITE 1 AC4 9 PHE B 189 GLY B 194 PHE B 195 THR B 196 SITE 2 AC4 9 PRO B 346 ALA B 347 HOH B 602 HOH B 636 SITE 3 AC4 9 HOH B 707 SITE 1 AC5 8 ALA B 336 GLY B 339 ALA B 341 TRP B 343 SITE 2 AC5 8 HOH B 650 HOH B 661 HOH B 747 HOH B 759 SITE 1 AC6 23 TYR A 73 ILE A 289 ARG B 39 GLY B 40 SITE 2 AC6 23 LYS B 41 SER B 103 SER B 104 LEU B 105 SITE 3 AC6 23 TYR B 142 ARG B 144 VAL B 186 ASN B 191 SITE 4 AC6 23 ASP B 220 ALA B 222 TYR B 223 SER B 256 SITE 5 AC6 23 SER B 258 LYS B 259 ARG B 394 HOH B 601 SITE 6 AC6 23 HOH B 625 HOH B 682 HOH B 779 CRYST1 103.388 53.521 170.224 90.00 104.23 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009672 0.000000 0.002453 0.00000 SCALE2 0.000000 0.018684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006061 0.00000