HEADER TOXIN/ANTITOXIN 01-FEB-16 5HY3 TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI TOXIN LSOA IN COMPLEX WITH T4 TITLE 2 PHAGE ANTITOXIN DMD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA ENDORIBONUCLEASE LSOA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOXIN LSOA; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTITOXIN DMD; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: LSOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 10 ORGANISM_TAXID: 10665; SOURCE 11 GENE: DMD, 61.5, Y02B; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TOXIN-ANTITOXIN, TOXIN-ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.WAN,Z.Q.GAO,Y.H.DONG REVDAT 3 03-APR-24 5HY3 1 JRNL REMARK REVDAT 2 07-SEP-16 5HY3 1 JRNL REVDAT 1 22-JUN-16 5HY3 0 JRNL AUTH H.WAN,Y.OTSUKA,Z.Q.GAO,Y.WEI,Z.CHEN,M.MASUDA,T.YONESAKI, JRNL AUTH 2 H.ZHANG,Y.H.DONG JRNL TITL STRUCTURAL INSIGHTS INTO THE INHIBITION MECHANISM OF JRNL TITL 2 BACTERIAL TOXIN LSOA BY BACTERIOPHAGE ANTITOXIN DMD JRNL REF MOL.MICROBIOL. V. 101 757 2016 JRNL REFN ESSN 1365-2958 JRNL PMID 27169810 JRNL DOI 10.1111/MMI.13420 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 11286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7536 - 4.9184 0.98 2849 121 0.2507 0.2678 REMARK 3 2 4.9184 - 3.9050 0.98 2678 147 0.2385 0.2976 REMARK 3 3 3.9050 - 3.4117 0.95 2541 136 0.2965 0.3284 REMARK 3 4 3.4117 - 3.0999 1.00 2681 133 0.2947 0.4044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2551 REMARK 3 ANGLE : 1.460 3429 REMARK 3 CHIRALITY : 0.058 383 REMARK 3 PLANARITY : 0.008 436 REMARK 3 DIHEDRAL : 17.719 968 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 7.04 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 7.04 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11548 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 61.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: THE SE-MET DERIVATIVE OF THIS COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65M AMMONIUM CITRATE TRIBASE, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.54150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.21550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.21550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.77075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.21550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.21550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.31225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.21550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.21550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.77075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.21550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.21550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.31225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.54150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 PHE A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ASN A 10 REMARK 465 ILE A 11 REMARK 465 ASN A 12 REMARK 465 ILE A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 GLU A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 THR A 21 REMARK 465 GLN A 22 REMARK 465 ASN A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 THR A 26 REMARK 465 ASN A 27 REMARK 465 TYR A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ASN A 31 REMARK 465 VAL A 32 REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 GLU A 35 REMARK 465 ARG A 36 REMARK 465 GLU A 37 REMARK 465 THR A 38 REMARK 465 HIS A 39 REMARK 465 ILE A 40 REMARK 465 SER A 41 REMARK 465 GLY A 42 REMARK 465 THR A 43 REMARK 465 TYR A 44 REMARK 465 LYS A 45 REMARK 465 GLY A 46 REMARK 465 ILE A 47 REMARK 465 ASP A 48 REMARK 465 PHE A 49 REMARK 465 LEU A 50 REMARK 465 ILE A 51 REMARK 465 LYS A 52 REMARK 465 LEU A 53 REMARK 465 MET A 54 REMARK 465 PRO A 55 REMARK 465 SER A 56 REMARK 465 GLY A 57 REMARK 465 GLY A 58 REMARK 465 ASN A 59 REMARK 465 THR A 60 REMARK 465 THR A 61 REMARK 465 ILE A 62 REMARK 465 GLY A 63 REMARK 465 ARG A 64 REMARK 465 ALA A 65 REMARK 465 SER A 66 REMARK 465 GLY A 67 REMARK 465 GLN A 68 REMARK 465 ASN A 69 REMARK 465 ASN A 70 REMARK 465 THR A 71 REMARK 465 TYR A 72 REMARK 465 PHE A 73 REMARK 465 ASP A 74 REMARK 465 GLU A 75 REMARK 465 ILE A 76 REMARK 465 ALA A 77 REMARK 465 LEU A 78 REMARK 465 ILE A 79 REMARK 465 ILE A 80 REMARK 465 LYS A 81 REMARK 465 GLU A 82 REMARK 465 ASN A 83 REMARK 465 CYS A 84 REMARK 465 LEU A 85 REMARK 465 TYR A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 465 THR A 89 REMARK 465 TYR A 147 REMARK 465 LYS A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 150 REMARK 465 LEU A 346 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA VAL A 179 NZ LYS A 192 1.64 REMARK 500 O ASN A 183 O PHE A 186 1.68 REMARK 500 O GLU A 180 OD1 ASN A 183 1.74 REMARK 500 CB VAL A 179 NZ LYS A 192 1.74 REMARK 500 O TRP B 31 OG1 THR B 34 1.74 REMARK 500 N VAL A 179 NZ LYS A 192 1.82 REMARK 500 O THR A 194 OG SER A 197 1.83 REMARK 500 O GLU A 267 CD ARG A 279 1.86 REMARK 500 O LYS A 90 O LYS A 157 1.86 REMARK 500 NZ LYS B 52 OE1 GLU B 55 1.87 REMARK 500 CD PRO A 204 OD2 ASP A 338 1.88 REMARK 500 NZ LYS A 202 OD1 ASP A 331 1.89 REMARK 500 O LYS A 182 N PHE A 186 1.92 REMARK 500 O ILE A 96 N SER A 151 1.94 REMARK 500 O LYS A 191 OG1 THR A 194 1.99 REMARK 500 O PHE A 110 CB GLU A 113 1.99 REMARK 500 O GLU A 198 OG SER A 201 2.00 REMARK 500 O GLU A 232 OG1 THR A 320 2.02 REMARK 500 O LYS A 176 CG2 VAL A 179 2.04 REMARK 500 NE2 GLN A 160 O SER A 262 2.07 REMARK 500 C GLU A 284 ND2 ASN A 287 2.15 REMARK 500 O CYS A 170 CB LEU A 173 2.16 REMARK 500 O ALA A 328 OG1 THR A 332 2.16 REMARK 500 O GLU A 196 N HIS A 200 2.17 REMARK 500 O PHE A 110 N GLU A 113 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 255 OE1 GLU A 325 4454 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 204 C - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 PRO A 274 C - N - CD ANGL. DEV. = -36.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 98 -147.38 63.48 REMARK 500 PHE A 99 129.01 99.43 REMARK 500 SER A 100 -61.48 71.57 REMARK 500 ASP A 102 -49.31 91.45 REMARK 500 ASN A 124 -112.70 -94.51 REMARK 500 LYS A 145 -73.40 -165.50 REMARK 500 LYS A 263 -149.19 -88.98 REMARK 500 PRO A 274 -132.40 -99.57 REMARK 500 ILE A 286 -76.18 -85.81 REMARK 500 LEU A 344 70.80 -113.68 REMARK 500 GLU B 15 9.15 88.71 REMARK 500 ASP B 50 11.78 81.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 125 PRO A 126 -149.78 REMARK 500 GLY A 288 GLU A 289 139.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 5HY3 A 1 346 UNP O82881 LSOA_ECO57 1 346 DBREF 5HY3 B 1 60 UNP P39232 DMD_BPT4 1 60 SEQRES 1 A 346 MET ALA GLN ASN PRO PHE LYS ALA LEU ASN ILE ASN ILE SEQRES 2 A 346 ASP LYS ILE GLU SER ALA LEU THR GLN ASN GLY VAL THR SEQRES 3 A 346 ASN TYR SER SER ASN VAL LYS ASN GLU ARG GLU THR HIS SEQRES 4 A 346 ILE SER GLY THR TYR LYS GLY ILE ASP PHE LEU ILE LYS SEQRES 5 A 346 LEU MET PRO SER GLY GLY ASN THR THR ILE GLY ARG ALA SEQRES 6 A 346 SER GLY GLN ASN ASN THR TYR PHE ASP GLU ILE ALA LEU SEQRES 7 A 346 ILE ILE LYS GLU ASN CYS LEU TYR SER ASP THR LYS ASN SEQRES 8 A 346 PHE GLU TYR THR ILE PRO LYS PHE SER ASP ASP ASP ARG SEQRES 9 A 346 ALA ASN LEU PHE GLU PHE LEU SER GLU GLU GLY ILE THR SEQRES 10 A 346 ILE THR GLU ASP ASN ASN ASN ASP PRO ASN CYS LYS HIS SEQRES 11 A 346 GLN TYR ILE MET THR THR SER ASN GLY ASP ARG VAL ARG SEQRES 12 A 346 ALA LYS ILE TYR LYS ARG GLY SER ILE GLN PHE GLN GLY SEQRES 13 A 346 LYS TYR LEU GLN ILE ALA SER LEU ILE ASN ASP PHE MET SEQRES 14 A 346 CYS SER ILE LEU ASN MET LYS GLU ILE VAL GLU GLN LYS SEQRES 15 A 346 ASN LYS GLU PHE ASN VAL ASP ILE LYS LYS GLU THR ILE SEQRES 16 A 346 GLU SER GLU LEU HIS SER LYS LEU PRO LYS SER ILE ASP SEQRES 17 A 346 LYS ILE HIS GLU ASP ILE LYS LYS GLN LEU SER CYS SER SEQRES 18 A 346 LEU ILE MET LYS LYS ILE ASP VAL GLU MET GLU ASP TYR SEQRES 19 A 346 SER THR TYR CYS PHE SER ALA LEU ARG ALA ILE GLU GLY SEQRES 20 A 346 PHE ILE TYR GLN ILE LEU ASN ASP VAL CYS ASN PRO SER SEQRES 21 A 346 SER SER LYS ASN LEU GLY GLU TYR PHE THR GLU ASN LYS SEQRES 22 A 346 PRO LYS TYR ILE ILE ARG GLU ILE HIS GLN GLU THR ILE SEQRES 23 A 346 ASN GLY GLU ILE ALA GLU VAL LEU CYS GLU CYS TYR THR SEQRES 24 A 346 TYR TRP HIS GLU ASN ARG HIS GLY LEU PHE HIS MET LYS SEQRES 25 A 346 PRO GLY ILE ALA ASP THR LYS THR ILE ASN LYS LEU GLU SEQRES 26 A 346 SER ILE ALA ILE ILE ASP THR VAL CYS GLN LEU ILE ASP SEQRES 27 A 346 GLY GLY VAL ALA ARG LEU LYS LEU SEQRES 1 B 60 MET GLU LEU VAL LYS VAL VAL PHE MET GLY TRP PHE LYS SEQRES 2 B 60 ASN GLU SER MET PHE THR LYS GLU ILE THR MET MET LYS SEQRES 3 B 60 ASP ASP VAL GLN TRP ALA THR THR GLN TYR ALA GLU VAL SEQRES 4 B 60 ASN LYS ALA LEU VAL LYS ALA PHE ILE ASP ASP LYS LYS SEQRES 5 B 60 VAL CYS GLU VAL ASP CYS ARG GLY HELIX 1 AA1 ASP A 102 GLU A 114 1 13 HELIX 2 AA2 LEU A 159 LEU A 173 1 15 HELIX 3 AA3 ASN A 174 PHE A 186 1 13 HELIX 4 AA4 LYS A 191 LEU A 203 1 13 HELIX 5 AA5 HIS A 211 LEU A 222 1 12 HELIX 6 AA6 LEU A 222 ILE A 227 1 6 HELIX 7 AA7 TYR A 234 CYS A 257 1 24 HELIX 8 AA8 ASN A 264 TYR A 268 1 5 HELIX 9 AA9 GLU A 280 GLN A 283 5 4 HELIX 10 AB1 GLU A 289 HIS A 310 1 22 HELIX 11 AB2 ASN A 322 LEU A 344 1 23 HELIX 12 AB3 MET B 25 ASP B 27 5 3 HELIX 13 AB4 ASP B 28 LYS B 41 1 14 SHEET 1 AA1 7 ILE A 152 GLY A 156 0 SHEET 2 AA1 7 PHE A 92 ILE A 96 -1 N ILE A 96 O ILE A 152 SHEET 3 AA1 7 LYS B 51 ASP B 57 -1 O GLU B 55 N GLU A 93 SHEET 4 AA1 7 LEU B 43 ILE B 48 -1 N ILE B 48 O LYS B 51 SHEET 5 AA1 7 VAL B 4 TRP B 11 -1 N VAL B 7 O PHE B 47 SHEET 6 AA1 7 MET B 17 MET B 24 -1 O ILE B 22 N VAL B 6 SHEET 7 AA1 7 ALA A 316 ASP A 317 1 N ASP A 317 O THR B 19 SHEET 1 AA2 2 THR A 117 ASP A 121 0 SHEET 2 AA2 2 GLN A 131 THR A 135 -1 O THR A 135 N THR A 117 SHEET 1 AA3 2 PHE A 269 THR A 270 0 SHEET 2 AA3 2 ILE A 277 ILE A 278 -1 O ILE A 277 N THR A 270 LINK O ILE A 161 CD1 ILE A 165 1555 1555 1.50 LINK CG1 VAL A 179 CD LYS A 192 1555 1555 1.28 LINK CG1 VAL A 179 CE LYS A 192 1555 1555 1.28 LINK CG1 VAL A 179 NZ LYS A 192 1555 1555 1.42 LINK O GLU A 284 ND2 ASN A 287 1555 1555 1.43 CISPEP 1 GLU A 114 GLY A 115 0 -16.83 CISPEP 2 ALA A 144 LYS A 145 0 2.83 CRYST1 112.431 112.431 95.083 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008894 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010517 0.00000