HEADER MEMBRANE PROTEIN 01-FEB-16 5HYA TITLE STRUCTURAL MECHANISMS OF EXTRACELLULAR ION EXCHANGE AND INDUCED TITLE 2 BINDING-SITE OCCLUSION IN THE SODIUM-CALCIUM EXCHANGERNCX_MJ SOAKED TITLE 3 WITH 150 MM NA+ AND NOMINAL CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM,CALCIUM EXCHANGER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 6 GENE: MJ0091; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NA+/CA2+ EXCHANGE, CALCIUM SIGNALLING, MEMBRANE TRANSPORTER, INDUCED KEYWDS 2 CONFORMATIONAL CHANGE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIAO,Y.X.JIANG,J.D.FARALDO-GOMEZ REVDAT 5 08-NOV-23 5HYA 1 REMARK REVDAT 4 23-MAR-22 5HYA 1 LINK REVDAT 3 18-OCT-17 5HYA 1 COMPND REMARK REVDAT 2 22-JUN-16 5HYA 1 JRNL REVDAT 1 11-MAY-16 5HYA 0 JRNL AUTH J.LIAO,F.MARINELLI,C.LEE,Y.HUANG,J.D.FARALDO-GOMEZ,Y.JIANG JRNL TITL MECHANISM OF EXTRACELLULAR ION EXCHANGE AND BINDING-SITE JRNL TITL 2 OCCLUSION IN A SODIUM/CALCIUM EXCHANGER JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 590 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27183196 JRNL DOI 10.1038/NSMB.3230 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.LIAO,H.LI,W.ZENG,D.B.SAUER,R.BELMARES,Y.JIANG REMARK 1 TITL STRUCTURAL INSIGHT INTO THE ION-EXCHANGE MECHANISM OF THE REMARK 1 TITL 2 SODIUM/CALCIUM EXCHANGER. REMARK 1 REF SCIENCE V. 335 686 2012 REMARK 1 REFN ESSN 1095-9203 REMARK 1 PMID 22323814 REMARK 1 DOI 10.1126/SCIENCE.1215759 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6801 - 4.5702 0.98 1986 154 0.2122 0.2052 REMARK 3 2 4.5702 - 3.6284 1.00 1909 147 0.1712 0.1779 REMARK 3 3 3.6284 - 3.1700 1.00 1893 146 0.1800 0.2127 REMARK 3 4 3.1700 - 2.8803 0.99 1880 145 0.1711 0.2286 REMARK 3 5 2.8803 - 2.6739 0.99 1852 143 0.1674 0.2165 REMARK 3 6 2.6739 - 2.5163 0.99 1828 141 0.1516 0.2035 REMARK 3 7 2.5163 - 2.3903 0.99 1864 144 0.1647 0.1922 REMARK 3 8 2.3903 - 2.2863 0.99 1838 141 0.1538 0.2086 REMARK 3 9 2.2863 - 2.1983 0.99 1820 141 0.1575 0.2156 REMARK 3 10 2.1983 - 2.1224 0.99 1827 141 0.1666 0.2003 REMARK 3 11 2.1224 - 2.0561 0.99 1816 140 0.1733 0.2227 REMARK 3 12 2.0561 - 1.9973 0.98 1808 141 0.1915 0.2320 REMARK 3 13 1.9973 - 1.9447 0.98 1813 139 0.2026 0.2488 REMARK 3 14 1.9447 - 1.8973 0.96 1772 137 0.2284 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2510 REMARK 3 ANGLE : 0.966 3321 REMARK 3 CHIRALITY : 0.038 388 REMARK 3 PLANARITY : 0.005 379 REMARK 3 DIHEDRAL : 15.196 948 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.897 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: 3V5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.10300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.43950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.10300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.43950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 149 REMARK 465 ILE A 150 REMARK 465 GLU A 151 REMARK 465 GLU A 152 REMARK 465 ASN A 153 REMARK 465 ASN A 154 REMARK 465 ASP A 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 589 O HOH A 594 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 44 -86.44 -116.90 REMARK 500 SER A 278 -131.31 -142.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 599 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 7.48 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MYS A 413 REMARK 610 MYS A 414 REMARK 610 MYS A 416 REMARK 610 MYS A 419 REMARK 610 MYS A 420 REMARK 610 MYS A 421 REMARK 610 OLC A 422 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 47 O REMARK 620 2 THR A 50 OG1 85.3 REMARK 620 3 SER A 51 OG 83.8 151.5 REMARK 620 4 GLU A 213 OE2 156.0 89.5 89.8 REMARK 620 5 SER A 236 OG 103.8 99.0 109.1 100.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 50 O REMARK 620 2 GLU A 54 OE1 96.4 REMARK 620 3 GLU A 54 OE2 146.3 52.9 REMARK 620 4 THR A 209 O 123.8 96.5 78.5 REMARK 620 5 GLU A 213 OE1 98.6 151.9 104.8 94.7 REMARK 620 6 GLU A 213 OE2 79.2 107.4 95.7 145.1 53.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 SER A 77 OG 100.7 REMARK 620 3 ALA A 206 O 157.1 101.9 REMARK 620 4 THR A 209 OG1 90.3 98.9 82.3 REMARK 620 5 SER A 210 OG 88.5 110.1 87.6 150.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 118 O REMARK 620 2 ASP A 121 OD1 83.9 REMARK 620 3 GLY A 122 O 90.3 87.6 REMARK 620 4 ASP A 127 OD2 101.1 174.9 91.6 REMARK 620 5 OLC A 409 O25 88.1 104.3 167.8 76.9 REMARK 620 6 HOH A 573 O 171.2 87.4 88.2 87.5 95.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYS A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 423 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HXS RELATED DB: PDB REMARK 900 RELATED ID: 5HXR RELATED DB: PDB REMARK 900 RELATED ID: 5HXH RELATED DB: PDB REMARK 900 RELATED ID: 5HXE RELATED DB: PDB REMARK 900 RELATED ID: 5HXC RELATED DB: PDB REMARK 900 RELATED ID: 5HWY RELATED DB: PDB REMARK 900 RELATED ID: 5HWX RELATED DB: PDB DBREF 5HYA A 1 302 UNP Q57556 Y091_METJA 1 302 SEQADV 5HYA VAL A 2 UNP Q57556 LEU 2 ENGINEERED MUTATION SEQADV 5HYA GLY A 303 UNP Q57556 EXPRESSION TAG SEQADV 5HYA GLY A 304 UNP Q57556 EXPRESSION TAG SEQRES 1 A 304 MET VAL ILE LEU GLY VAL GLY TYR PHE LEU LEU GLY LEU SEQRES 2 A 304 ILE LEU LEU TYR TYR GLY SER ASP TRP PHE VAL LEU GLY SEQRES 3 A 304 SER GLU ARG ILE ALA ARG HIS PHE ASN VAL SER ASN PHE SEQRES 4 A 304 VAL ILE GLY ALA THR VAL MET ALA ILE GLY THR SER LEU SEQRES 5 A 304 PRO GLU ILE LEU THR SER ALA TYR ALA SER TYR MET HIS SEQRES 6 A 304 ALA PRO GLY ILE SER ILE GLY ASN ALA ILE GLY SER CYS SEQRES 7 A 304 ILE CYS ASN ILE GLY LEU VAL LEU GLY LEU SER ALA ILE SEQRES 8 A 304 ILE SER PRO ILE ILE VAL ASP LYS ASN LEU GLN LYS ASN SEQRES 9 A 304 ILE LEU VAL TYR LEU LEU PHE VAL ILE PHE ALA ALA VAL SEQRES 10 A 304 ILE GLY ILE ASP GLY PHE SER TRP ILE ASP GLY VAL VAL SEQRES 11 A 304 LEU LEU ILE LEU PHE ILE ILE TYR LEU ARG TRP THR VAL SEQRES 12 A 304 LYS ASN GLY SER ALA GLU ILE GLU GLU ASN ASN ASP LYS SEQRES 13 A 304 ASN ASN PRO SER VAL VAL PHE SER LEU VAL LEU LEU ILE SEQRES 14 A 304 ILE GLY LEU ILE GLY VAL LEU VAL GLY ALA GLU LEU PHE SEQRES 15 A 304 VAL ASP GLY ALA LYS LYS ILE ALA LEU ALA LEU ASP ILE SEQRES 16 A 304 SER ASP LYS VAL ILE GLY PHE THR LEU VAL ALA PHE GLY SEQRES 17 A 304 THR SER LEU PRO GLU LEU MET VAL SER LEU ALA ALA ALA SEQRES 18 A 304 LYS ARG ASN LEU GLY GLY MET VAL LEU GLY ASN VAL ILE SEQRES 19 A 304 GLY SER ASN ILE ALA ASP ILE GLY GLY ALA LEU ALA VAL SEQRES 20 A 304 GLY SER LEU PHE MET HIS LEU PRO ALA GLU ASN VAL GLN SEQRES 21 A 304 MET ALA VAL LEU VAL ILE MET SER LEU LEU LEU TYR LEU SEQRES 22 A 304 PHE ALA LYS TYR SER LYS ILE GLY ARG TRP GLN GLY ILE SEQRES 23 A 304 LEU PHE LEU ALA LEU TYR ILE ILE ALA ILE ALA SER LEU SEQRES 24 A 304 ARG MET GLY GLY GLY HET NA A 401 1 HET NA A 402 1 HET NA A 403 1 HET CA A 404 1 HET ACT A 405 4 HET ACT A 406 4 HET ACT A 407 4 HET ACT A 408 4 HET OLC A 409 25 HET OLC A 410 25 HET OLC A 411 25 HET MYS A 412 15 HET MYS A 413 12 HET MYS A 414 10 HET 1PE A 415 16 HET MYS A 416 5 HET MYS A 417 15 HET MYS A 418 15 HET MYS A 419 14 HET MYS A 420 5 HET MYS A 421 14 HET OLC A 422 20 HET OLC A 423 25 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM MYS PENTADECANE HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN 1PE PEG400 FORMUL 2 NA 3(NA 1+) FORMUL 5 CA CA 2+ FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 10 OLC 5(C21 H40 O4) FORMUL 13 MYS 9(C15 H32) FORMUL 16 1PE C10 H22 O6 FORMUL 25 HOH *100(H2 O) HELIX 1 AA1 MET A 1 PHE A 34 1 34 HELIX 2 AA2 SER A 37 THR A 44 1 8 HELIX 3 AA3 THR A 44 MET A 64 1 21 HELIX 4 AA4 ALA A 66 LEU A 84 1 19 HELIX 5 AA5 LEU A 84 SER A 93 1 10 HELIX 6 AA6 ASP A 98 GLY A 119 1 22 HELIX 7 AA7 SER A 124 GLY A 146 1 23 HELIX 8 AA8 ASN A 158 LEU A 193 1 36 HELIX 9 AA9 ASP A 197 LEU A 204 1 8 HELIX 10 AB1 LEU A 204 SER A 210 1 7 HELIX 11 AB2 SER A 210 ARG A 223 1 14 HELIX 12 AB3 LEU A 225 GLY A 243 1 19 HELIX 13 AB4 GLY A 243 MET A 252 1 10 HELIX 14 AB5 GLU A 257 SER A 278 1 22 HELIX 15 AB6 GLY A 281 LEU A 299 1 19 LINK O ALA A 47 NA NA A 401 1555 1555 2.32 LINK OG1 THR A 50 NA NA A 401 1555 1555 2.30 LINK O THR A 50 NA NA A 402 1555 1555 2.31 LINK OG SER A 51 NA NA A 401 1555 1555 2.36 LINK OE1 GLU A 54 NA NA A 402 1555 1555 2.27 LINK OE2 GLU A 54 NA NA A 402 1555 1555 2.61 LINK OE2 GLU A 54 NA NA A 403 1555 1555 2.27 LINK OG SER A 77 NA NA A 403 1555 1555 2.23 LINK O ILE A 118 CA CA A 404 1555 1555 2.31 LINK OD1 ASP A 121 CA CA A 404 1555 1555 2.41 LINK O GLY A 122 CA CA A 404 1555 1555 2.33 LINK OD2 ASP A 127 CA CA A 404 1555 1555 2.40 LINK O ALA A 206 NA NA A 403 1555 1555 2.32 LINK O THR A 209 NA NA A 402 1555 1555 2.28 LINK OG1 THR A 209 NA NA A 403 1555 1555 2.37 LINK OG SER A 210 NA NA A 403 1555 1555 2.44 LINK OE2 GLU A 213 NA NA A 401 1555 1555 2.28 LINK OE1 GLU A 213 NA NA A 402 1555 1555 2.33 LINK OE2 GLU A 213 NA NA A 402 1555 1555 2.55 LINK OG SER A 236 NA NA A 401 1555 1555 2.38 LINK CA CA A 404 O25 OLC A 409 1555 1555 2.40 LINK CA CA A 404 O HOH A 573 1555 1555 2.47 SITE 1 AC1 5 ALA A 47 THR A 50 SER A 51 GLU A 213 SITE 2 AC1 5 SER A 236 SITE 1 AC2 4 THR A 50 GLU A 54 THR A 209 GLU A 213 SITE 1 AC3 5 GLU A 54 SER A 77 ALA A 206 THR A 209 SITE 2 AC3 5 SER A 210 SITE 1 AC4 6 ILE A 118 ASP A 121 GLY A 122 ASP A 127 SITE 2 AC4 6 OLC A 409 HOH A 573 SITE 1 AC5 2 ILE A 14 HOH A 503 SITE 1 AC6 1 TYR A 60 SITE 1 AC7 2 LEU A 193 HOH A 501 SITE 1 AC8 4 ASN A 35 LYS A 279 HOH A 530 HOH A 535 SITE 1 AC9 9 ILE A 113 VAL A 117 ILE A 118 ASP A 121 SITE 2 AC9 9 ASP A 127 ALA A 186 CA A 404 OLC A 410 SITE 3 AC9 9 OLC A 411 SITE 1 AD1 12 PHE A 9 PHE A 111 PHE A 114 ILE A 118 SITE 2 AD1 12 ILE A 126 ASP A 127 LEU A 134 TYR A 138 SITE 3 AD1 12 OLC A 409 OLC A 411 OLC A 423 HOH A 505 SITE 1 AD2 7 PHE A 182 ALA A 190 ASP A 197 LYS A 198 SITE 2 AD2 7 GLY A 201 OLC A 409 OLC A 410 SITE 1 AD3 1 ASN A 258 SITE 1 AD4 2 TRP A 283 ILE A 286 SITE 1 AD5 5 TYR A 17 SER A 20 MET A 215 LYS A 222 SITE 2 AD5 5 OLC A 423 SITE 1 AD6 4 ILE A 136 ARG A 140 ALA A 297 MYS A 421 SITE 1 AD7 5 ILE A 91 TRP A 125 LEU A 250 ARG A 282 SITE 2 AD7 5 ILE A 293 SITE 1 AD8 5 VAL A 259 LEU A 291 SER A 298 LEU A 299 SITE 2 AD8 5 ARG A 300 SITE 1 AD9 3 ILE A 293 SER A 298 MYS A 417 SITE 1 AE1 6 PRO A 53 LEU A 172 LEU A 176 ALA A 179 SITE 2 AE1 6 GLU A 180 GLY A 208 SITE 1 AE2 13 CYS A 80 LEU A 84 LEU A 88 ILE A 137 SITE 2 AE2 13 THR A 203 LEU A 204 ALA A 206 PHE A 207 SITE 3 AE2 13 TYR A 292 OLC A 410 1PE A 415 HOH A 504 SITE 4 AE2 13 HOH A 506 CRYST1 49.490 72.879 96.206 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010394 0.00000