data_5HYB # _entry.id 5HYB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5HYB WWPDB D_1000217768 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4ZV5 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5HYB _pdbx_database_status.recvd_initial_deposition_date 2016-02-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brynda, J.' 1 'Dostal, J.' 2 'Zabransky, A.' 3 'Dolezal, M.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of myristoylated Y81A mutant MMTV matrix protein' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Brynda, J.' 1 primary 'Dostal, J.' 2 primary 'Zabransky, A.' 3 primary 'Dolezal, M.' 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5HYB _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.802 _cell.length_a_esd ? _cell.length_b 61.802 _cell.length_b_esd ? _cell.length_c 89.622 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Matrix Protein' 10396.958 2 ? Y81A ? ? 2 non-polymer syn 'MYRISTIC ACID' 228.371 2 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 4 water nat water 18.015 89 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gag polyprotein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GVSGSKGQKLFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQAA PIWLQLREILT ; _entity_poly.pdbx_seq_one_letter_code_can ;GVSGSKGQKLFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQAA PIWLQLREILT ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 LYS n 1 7 GLY n 1 8 GLN n 1 9 LYS n 1 10 LEU n 1 11 PHE n 1 12 VAL n 1 13 SER n 1 14 VAL n 1 15 LEU n 1 16 GLN n 1 17 ARG n 1 18 LEU n 1 19 LEU n 1 20 SER n 1 21 GLU n 1 22 ARG n 1 23 GLY n 1 24 LEU n 1 25 HIS n 1 26 VAL n 1 27 LYS n 1 28 GLU n 1 29 SER n 1 30 SER n 1 31 ALA n 1 32 ILE n 1 33 GLU n 1 34 PHE n 1 35 TYR n 1 36 GLN n 1 37 PHE n 1 38 LEU n 1 39 ILE n 1 40 LYS n 1 41 VAL n 1 42 SER n 1 43 PRO n 1 44 TRP n 1 45 PHE n 1 46 PRO n 1 47 GLU n 1 48 GLU n 1 49 GLY n 1 50 GLY n 1 51 LEU n 1 52 ASN n 1 53 LEU n 1 54 GLN n 1 55 ASP n 1 56 TRP n 1 57 LYS n 1 58 ARG n 1 59 VAL n 1 60 GLY n 1 61 ARG n 1 62 GLU n 1 63 MET n 1 64 LYS n 1 65 ARG n 1 66 TYR n 1 67 ALA n 1 68 ALA n 1 69 GLU n 1 70 HIS n 1 71 GLY n 1 72 THR n 1 73 ASP n 1 74 SER n 1 75 ILE n 1 76 PRO n 1 77 LYS n 1 78 GLN n 1 79 ALA n 1 80 ALA n 1 81 PRO n 1 82 ILE n 1 83 TRP n 1 84 LEU n 1 85 GLN n 1 86 LEU n 1 87 ARG n 1 88 GLU n 1 89 ILE n 1 90 LEU n 1 91 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 91 _entity_src_gen.gene_src_common_name MMTV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mouse mammary tumor virus (strain BR6)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11758 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector pET-22b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GAG_MMTVB _struct_ref.pdbx_db_accession P10258 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GVSGSKGQKLFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQAY PIWLQLREILT ; _struct_ref.pdbx_align_begin 2 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5HYB A 1 ? 91 ? P10258 2 ? 92 ? 2 92 2 1 5HYB B 1 ? 91 ? P10258 2 ? 92 ? 2 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5HYB ALA A 80 ? UNP P10258 TYR 81 'engineered mutation' 81 1 2 5HYB ALA B 80 ? UNP P10258 TYR 81 'engineered mutation' 81 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MYR non-polymer . 'MYRISTIC ACID' ? 'C14 H28 O2' 228.371 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HYB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl pH 8.5, 25% (v/v) PEG 550 MME' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-05-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Optics _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91841 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 35.3 _reflns.entry_id 5HYB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.93 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13822 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 89.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 2.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.01 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 80.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.906 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.3100 _refine.aniso_B[1][2] -0.1600 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -0.3100 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.4700 _refine.B_iso_max 89.900 _refine.B_iso_mean 27.2700 _refine.B_iso_min 12.670 _refine.correlation_coeff_Fo_to_Fc 0.9450 _refine.correlation_coeff_Fo_to_Fc_free 0.9240 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5HYB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9400 _refine.ls_d_res_low 45.9500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12687 _refine.ls_number_reflns_R_free 955 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.3200 _refine.ls_percent_reflns_R_free 7.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2165 _refine.ls_R_factor_R_free 0.2735 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2123 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2250 _refine.pdbx_overall_ESU_R_Free 0.2020 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.4170 _refine.overall_SU_ML 0.1490 _refine.overall_SU_R_Cruickshank_DPI 0.2255 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9400 _refine_hist.d_res_low 45.9500 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1597 _refine_hist.pdbx_number_residues_total 182 _refine_hist.pdbx_B_iso_mean_ligand 33.53 _refine_hist.pdbx_B_iso_mean_solvent 33.43 _refine_hist.pdbx_number_atoms_protein 1459 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.019 1577 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1175 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.504 1.975 2115 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.933 3.000 2855 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.051 5.000 190 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.823 23.239 71 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.999 15.000 285 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.616 15.000 13 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 222 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.021 1691 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 330 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9420 _refine_ls_shell.d_res_low 1.9920 _refine_ls_shell.number_reflns_all 656 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_R_work 611 _refine_ls_shell.percent_reflns_obs 64.7600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4920 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.4720 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5HYB _struct.title 'Crystal structure of myristoylated Y81A mutant MMTV matrix protein' _struct.pdbx_descriptor 'Matrix Protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HYB _struct_keywords.text 'Myristoylated protein, MMTV mutant, Viral Protein' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 7 ? GLU A 21 ? GLY A 8 GLU A 22 1 ? 15 HELX_P HELX_P2 AA2 LYS A 27 ? SER A 42 ? LYS A 28 SER A 43 1 ? 16 HELX_P HELX_P3 AA3 PRO A 43 ? GLY A 49 ? PRO A 44 GLY A 50 1 ? 7 HELX_P HELX_P4 AA4 ASN A 52 ? GLY A 71 ? ASN A 53 GLY A 72 1 ? 20 HELX_P HELX_P5 AA5 THR A 72 ? ILE A 75 ? THR A 73 ILE A 76 5 ? 4 HELX_P HELX_P6 AA6 GLN A 78 ? LEU A 90 ? GLN A 79 LEU A 91 1 ? 13 HELX_P HELX_P7 AA7 GLY B 7 ? GLU B 21 ? GLY B 8 GLU B 22 1 ? 15 HELX_P HELX_P8 AA8 LYS B 27 ? SER B 42 ? LYS B 28 SER B 43 1 ? 16 HELX_P HELX_P9 AA9 PRO B 43 ? GLY B 49 ? PRO B 44 GLY B 50 1 ? 7 HELX_P HELX_P10 AB1 ASN B 52 ? GLY B 71 ? ASN B 53 GLY B 72 1 ? 20 HELX_P HELX_P11 AB2 GLN B 78 ? THR B 91 ? GLN B 79 THR B 92 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_comp_id MYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MYR _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.521 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MYR 101 ? 7 'binding site for residue MYR A 101' AC2 Software A PEG 102 ? 6 'binding site for residue PEG A 102' AC3 Software B PEG 102 ? 5 'binding site for residue PEG B 102' AC4 Software B MYR 101 ? 10 'binding site for Di-peptide MYR B 101 and GLY B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 1 ? GLY A 2 . ? 1_555 ? 2 AC1 7 PRO A 46 ? PRO A 47 . ? 1_555 ? 3 AC1 7 GLU A 47 ? GLU A 48 . ? 1_555 ? 4 AC1 7 GLY B 7 ? GLY B 8 . ? 1_555 ? 5 AC1 7 VAL B 14 ? VAL B 15 . ? 1_555 ? 6 AC1 7 LEU B 51 ? LEU B 52 . ? 1_555 ? 7 AC1 7 MYR E . ? MYR B 101 . ? 5_555 ? 8 AC2 6 MET A 63 ? MET A 64 . ? 1_555 ? 9 AC2 6 LYS A 64 ? LYS A 65 . ? 1_555 ? 10 AC2 6 ILE A 75 ? ILE A 76 . ? 1_555 ? 11 AC2 6 ALA A 80 ? ALA A 81 . ? 1_555 ? 12 AC2 6 TRP A 83 ? TRP A 84 . ? 1_555 ? 13 AC2 6 HOH G . ? HOH A 202 . ? 1_555 ? 14 AC3 5 GLY B 60 ? GLY B 61 . ? 1_555 ? 15 AC3 5 MET B 63 ? MET B 64 . ? 1_555 ? 16 AC3 5 LYS B 64 ? LYS B 65 . ? 1_555 ? 17 AC3 5 ILE B 75 ? ILE B 76 . ? 1_555 ? 18 AC3 5 TRP B 83 ? TRP B 84 . ? 1_555 ? 19 AC4 10 GLY A 1 ? GLY A 2 . ? 5_555 ? 20 AC4 10 GLY A 7 ? GLY A 8 . ? 5_555 ? 21 AC4 10 PHE A 11 ? PHE A 12 . ? 5_555 ? 22 AC4 10 LEU A 86 ? LEU A 87 . ? 5_555 ? 23 AC4 10 MYR C . ? MYR A 101 . ? 5_555 ? 24 AC4 10 VAL B 2 ? VAL B 3 . ? 1_555 ? 25 AC4 10 SER B 3 ? SER B 4 . ? 1_555 ? 26 AC4 10 LYS B 6 ? LYS B 7 . ? 1_555 ? 27 AC4 10 PRO B 46 ? PRO B 47 . ? 5_555 ? 28 AC4 10 GLU B 47 ? GLU B 48 . ? 5_555 ? # _atom_sites.entry_id 5HYB _atom_sites.fract_transf_matrix[1][1] 0.016181 _atom_sites.fract_transf_matrix[1][2] 0.009342 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011158 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 2 GLY GLY A . n A 1 2 VAL 2 3 3 VAL VAL A . n A 1 3 SER 3 4 4 SER SER A . n A 1 4 GLY 4 5 5 GLY GLY A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 LYS 6 7 7 LYS LYS A . n A 1 7 GLY 7 8 8 GLY GLY A . n A 1 8 GLN 8 9 9 GLN GLN A . n A 1 9 LYS 9 10 10 LYS LYS A . n A 1 10 LEU 10 11 11 LEU LEU A . n A 1 11 PHE 11 12 12 PHE PHE A . n A 1 12 VAL 12 13 13 VAL VAL A . n A 1 13 SER 13 14 14 SER SER A . n A 1 14 VAL 14 15 15 VAL VAL A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 GLN 16 17 17 GLN GLN A . n A 1 17 ARG 17 18 18 ARG ARG A . n A 1 18 LEU 18 19 19 LEU LEU A . n A 1 19 LEU 19 20 20 LEU LEU A . n A 1 20 SER 20 21 21 SER SER A . n A 1 21 GLU 21 22 22 GLU GLU A . n A 1 22 ARG 22 23 23 ARG ARG A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 HIS 25 26 26 HIS HIS A . n A 1 26 VAL 26 27 27 VAL VAL A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 GLU 28 29 29 GLU GLU A . n A 1 29 SER 29 30 30 SER SER A . n A 1 30 SER 30 31 31 SER SER A . n A 1 31 ALA 31 32 32 ALA ALA A . n A 1 32 ILE 32 33 33 ILE ILE A . n A 1 33 GLU 33 34 34 GLU GLU A . n A 1 34 PHE 34 35 35 PHE PHE A . n A 1 35 TYR 35 36 36 TYR TYR A . n A 1 36 GLN 36 37 37 GLN GLN A . n A 1 37 PHE 37 38 38 PHE PHE A . n A 1 38 LEU 38 39 39 LEU LEU A . n A 1 39 ILE 39 40 40 ILE ILE A . n A 1 40 LYS 40 41 41 LYS LYS A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 SER 42 43 43 SER SER A . n A 1 43 PRO 43 44 44 PRO PRO A . n A 1 44 TRP 44 45 45 TRP TRP A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 PRO 46 47 47 PRO PRO A . n A 1 47 GLU 47 48 48 GLU GLU A . n A 1 48 GLU 48 49 49 GLU GLU A . n A 1 49 GLY 49 50 50 GLY GLY A . n A 1 50 GLY 50 51 51 GLY GLY A . n A 1 51 LEU 51 52 52 LEU LEU A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 GLN 54 55 55 GLN GLN A . n A 1 55 ASP 55 56 56 ASP ASP A . n A 1 56 TRP 56 57 57 TRP TRP A . n A 1 57 LYS 57 58 58 LYS LYS A . n A 1 58 ARG 58 59 59 ARG ARG A . n A 1 59 VAL 59 60 60 VAL VAL A . n A 1 60 GLY 60 61 61 GLY GLY A . n A 1 61 ARG 61 62 62 ARG ARG A . n A 1 62 GLU 62 63 63 GLU GLU A . n A 1 63 MET 63 64 64 MET MET A . n A 1 64 LYS 64 65 65 LYS LYS A . n A 1 65 ARG 65 66 66 ARG ARG A . n A 1 66 TYR 66 67 67 TYR TYR A . n A 1 67 ALA 67 68 68 ALA ALA A . n A 1 68 ALA 68 69 69 ALA ALA A . n A 1 69 GLU 69 70 70 GLU GLU A . n A 1 70 HIS 70 71 71 HIS HIS A . n A 1 71 GLY 71 72 72 GLY GLY A . n A 1 72 THR 72 73 73 THR THR A . n A 1 73 ASP 73 74 74 ASP ASP A . n A 1 74 SER 74 75 75 SER SER A . n A 1 75 ILE 75 76 76 ILE ILE A . n A 1 76 PRO 76 77 77 PRO PRO A . n A 1 77 LYS 77 78 78 LYS LYS A . n A 1 78 GLN 78 79 79 GLN GLN A . n A 1 79 ALA 79 80 80 ALA ALA A . n A 1 80 ALA 80 81 81 ALA ALA A . n A 1 81 PRO 81 82 82 PRO PRO A . n A 1 82 ILE 82 83 83 ILE ILE A . n A 1 83 TRP 83 84 84 TRP TRP A . n A 1 84 LEU 84 85 85 LEU LEU A . n A 1 85 GLN 85 86 86 GLN GLN A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 ARG 87 88 88 ARG ARG A . n A 1 88 GLU 88 89 89 GLU GLU A . n A 1 89 ILE 89 90 90 ILE ILE A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 THR 91 92 92 THR THR A . n B 1 1 GLY 1 2 2 GLY GLY B . n B 1 2 VAL 2 3 3 VAL VAL B . n B 1 3 SER 3 4 4 SER SER B . n B 1 4 GLY 4 5 5 GLY GLY B . n B 1 5 SER 5 6 6 SER SER B . n B 1 6 LYS 6 7 7 LYS LYS B . n B 1 7 GLY 7 8 8 GLY GLY B . n B 1 8 GLN 8 9 9 GLN GLN B . n B 1 9 LYS 9 10 10 LYS LYS B . n B 1 10 LEU 10 11 11 LEU LEU B . n B 1 11 PHE 11 12 12 PHE PHE B . n B 1 12 VAL 12 13 13 VAL VAL B . n B 1 13 SER 13 14 14 SER SER B . n B 1 14 VAL 14 15 15 VAL VAL B . n B 1 15 LEU 15 16 16 LEU LEU B . n B 1 16 GLN 16 17 17 GLN GLN B . n B 1 17 ARG 17 18 18 ARG ARG B . n B 1 18 LEU 18 19 19 LEU LEU B . n B 1 19 LEU 19 20 20 LEU LEU B . n B 1 20 SER 20 21 21 SER SER B . n B 1 21 GLU 21 22 22 GLU GLU B . n B 1 22 ARG 22 23 23 ARG ARG B . n B 1 23 GLY 23 24 24 GLY GLY B . n B 1 24 LEU 24 25 25 LEU LEU B . n B 1 25 HIS 25 26 26 HIS HIS B . n B 1 26 VAL 26 27 27 VAL VAL B . n B 1 27 LYS 27 28 28 LYS LYS B . n B 1 28 GLU 28 29 29 GLU GLU B . n B 1 29 SER 29 30 30 SER SER B . n B 1 30 SER 30 31 31 SER SER B . n B 1 31 ALA 31 32 32 ALA ALA B . n B 1 32 ILE 32 33 33 ILE ILE B . n B 1 33 GLU 33 34 34 GLU GLU B . n B 1 34 PHE 34 35 35 PHE PHE B . n B 1 35 TYR 35 36 36 TYR TYR B . n B 1 36 GLN 36 37 37 GLN GLN B . n B 1 37 PHE 37 38 38 PHE PHE B . n B 1 38 LEU 38 39 39 LEU LEU B . n B 1 39 ILE 39 40 40 ILE ILE B . n B 1 40 LYS 40 41 41 LYS LYS B . n B 1 41 VAL 41 42 42 VAL VAL B . n B 1 42 SER 42 43 43 SER SER B . n B 1 43 PRO 43 44 44 PRO PRO B . n B 1 44 TRP 44 45 45 TRP TRP B . n B 1 45 PHE 45 46 46 PHE PHE B . n B 1 46 PRO 46 47 47 PRO PRO B . n B 1 47 GLU 47 48 48 GLU GLU B . n B 1 48 GLU 48 49 49 GLU GLU B . n B 1 49 GLY 49 50 50 GLY GLY B . n B 1 50 GLY 50 51 51 GLY GLY B . n B 1 51 LEU 51 52 52 LEU LEU B . n B 1 52 ASN 52 53 53 ASN ASN B . n B 1 53 LEU 53 54 54 LEU LEU B . n B 1 54 GLN 54 55 55 GLN GLN B . n B 1 55 ASP 55 56 56 ASP ASP B . n B 1 56 TRP 56 57 57 TRP TRP B . n B 1 57 LYS 57 58 58 LYS LYS B . n B 1 58 ARG 58 59 59 ARG ARG B . n B 1 59 VAL 59 60 60 VAL VAL B . n B 1 60 GLY 60 61 61 GLY GLY B . n B 1 61 ARG 61 62 62 ARG ARG B . n B 1 62 GLU 62 63 63 GLU GLU B . n B 1 63 MET 63 64 64 MET MET B . n B 1 64 LYS 64 65 65 LYS LYS B . n B 1 65 ARG 65 66 66 ARG ARG B . n B 1 66 TYR 66 67 67 TYR TYR B . n B 1 67 ALA 67 68 68 ALA ALA B . n B 1 68 ALA 68 69 69 ALA ALA B . n B 1 69 GLU 69 70 70 GLU GLU B . n B 1 70 HIS 70 71 71 HIS HIS B . n B 1 71 GLY 71 72 72 GLY GLY B . n B 1 72 THR 72 73 73 THR THR B . n B 1 73 ASP 73 74 74 ASP ASP B . n B 1 74 SER 74 75 75 SER SER B . n B 1 75 ILE 75 76 76 ILE ILE B . n B 1 76 PRO 76 77 77 PRO PRO B . n B 1 77 LYS 77 78 78 LYS LYS B . n B 1 78 GLN 78 79 79 GLN GLN B . n B 1 79 ALA 79 80 80 ALA ALA B . n B 1 80 ALA 80 81 81 ALA ALA B . n B 1 81 PRO 81 82 82 PRO PRO B . n B 1 82 ILE 82 83 83 ILE ILE B . n B 1 83 TRP 83 84 84 TRP TRP B . n B 1 84 LEU 84 85 85 LEU LEU B . n B 1 85 GLN 85 86 86 GLN GLN B . n B 1 86 LEU 86 87 87 LEU LEU B . n B 1 87 ARG 87 88 88 ARG ARG B . n B 1 88 GLU 88 89 89 GLU GLU B . n B 1 89 ILE 89 90 90 ILE ILE B . n B 1 90 LEU 90 91 91 LEU LEU B . n B 1 91 THR 91 92 92 THR THR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYR 1 101 101 MYR MYR A . D 3 PEG 1 102 2 PEG PEG A . E 2 MYR 1 101 101 MYR MYR B . F 3 PEG 1 102 1 PEG PEG B . G 4 HOH 1 201 235 HOH HOH A . G 4 HOH 2 202 2 HOH HOH A . G 4 HOH 3 203 210 HOH HOH A . G 4 HOH 4 204 220 HOH HOH A . G 4 HOH 5 205 229 HOH HOH A . G 4 HOH 6 206 222 HOH HOH A . G 4 HOH 7 207 234 HOH HOH A . G 4 HOH 8 208 216 HOH HOH A . G 4 HOH 9 209 230 HOH HOH A . G 4 HOH 10 210 237 HOH HOH A . G 4 HOH 11 211 233 HOH HOH A . G 4 HOH 12 212 1 HOH HOH A . G 4 HOH 13 213 209 HOH HOH A . G 4 HOH 14 214 204 HOH HOH A . G 4 HOH 15 215 201 HOH HOH A . G 4 HOH 16 216 227 HOH HOH A . G 4 HOH 17 217 219 HOH HOH A . G 4 HOH 18 218 211 HOH HOH A . G 4 HOH 19 219 225 HOH HOH A . G 4 HOH 20 220 228 HOH HOH A . G 4 HOH 21 221 223 HOH HOH A . G 4 HOH 22 222 210 HOH HOH A . G 4 HOH 23 223 214 HOH HOH A . G 4 HOH 24 224 206 HOH HOH A . G 4 HOH 25 225 202 HOH HOH A . G 4 HOH 26 226 207 HOH HOH A . G 4 HOH 27 227 226 HOH HOH A . G 4 HOH 28 228 208 HOH HOH A . G 4 HOH 29 229 231 HOH HOH A . G 4 HOH 30 230 236 HOH HOH A . G 4 HOH 31 231 232 HOH HOH A . G 4 HOH 32 232 217 HOH HOH A . G 4 HOH 33 233 215 HOH HOH A . G 4 HOH 34 234 218 HOH HOH A . G 4 HOH 35 235 203 HOH HOH A . G 4 HOH 36 236 219 HOH HOH A . G 4 HOH 37 237 238 HOH HOH A . G 4 HOH 38 238 220 HOH HOH A . H 4 HOH 1 201 247 HOH HOH B . H 4 HOH 2 202 242 HOH HOH B . H 4 HOH 3 203 249 HOH HOH B . H 4 HOH 4 204 207 HOH HOH B . H 4 HOH 5 205 248 HOH HOH B . H 4 HOH 6 206 226 HOH HOH B . H 4 HOH 7 207 240 HOH HOH B . H 4 HOH 8 208 205 HOH HOH B . H 4 HOH 9 209 204 HOH HOH B . H 4 HOH 10 210 244 HOH HOH B . H 4 HOH 11 211 218 HOH HOH B . H 4 HOH 12 212 235 HOH HOH B . H 4 HOH 13 213 237 HOH HOH B . H 4 HOH 14 214 205 HOH HOH B . H 4 HOH 15 215 227 HOH HOH B . H 4 HOH 16 216 229 HOH HOH B . H 4 HOH 17 217 212 HOH HOH B . H 4 HOH 18 218 233 HOH HOH B . H 4 HOH 19 219 225 HOH HOH B . H 4 HOH 20 220 231 HOH HOH B . H 4 HOH 21 221 224 HOH HOH B . H 4 HOH 22 222 232 HOH HOH B . H 4 HOH 23 223 224 HOH HOH B . H 4 HOH 24 224 215 HOH HOH B . H 4 HOH 25 225 202 HOH HOH B . H 4 HOH 26 226 214 HOH HOH B . H 4 HOH 27 227 236 HOH HOH B . H 4 HOH 28 228 206 HOH HOH B . H 4 HOH 29 229 211 HOH HOH B . H 4 HOH 30 230 217 HOH HOH B . H 4 HOH 31 231 241 HOH HOH B . H 4 HOH 32 232 213 HOH HOH B . H 4 HOH 33 233 209 HOH HOH B . H 4 HOH 34 234 228 HOH HOH B . H 4 HOH 35 235 208 HOH HOH B . H 4 HOH 36 236 222 HOH HOH B . H 4 HOH 37 237 221 HOH HOH B . H 4 HOH 38 238 234 HOH HOH B . H 4 HOH 39 239 245 HOH HOH B . H 4 HOH 40 240 239 HOH HOH B . H 4 HOH 41 241 230 HOH HOH B . H 4 HOH 42 242 203 HOH HOH B . H 4 HOH 43 243 221 HOH HOH B . H 4 HOH 44 244 238 HOH HOH B . H 4 HOH 45 245 212 HOH HOH B . H 4 HOH 46 246 201 HOH HOH B . H 4 HOH 47 247 216 HOH HOH B . H 4 HOH 48 248 213 HOH HOH B . H 4 HOH 49 249 243 HOH HOH B . H 4 HOH 50 250 223 HOH HOH B . H 4 HOH 51 251 246 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,E,F,H 1 2 A,C,D,G 2 1 A,C,D,G 2 3 B,E,F,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_665 x-y+1,-y+1,-z+2/3 1.0000000000 0.0000000000 0.0000000000 30.9010000000 0.0000000000 -1.0000000000 0.0000000000 53.5221020047 0.0000000000 0.0000000000 -1.0000000000 59.7480000000 3 'crystal symmetry operation' 5_565 x-y,-y+1,-z+2/3 1.0000000000 0.0000000000 0.0000000000 -30.9010000000 0.0000000000 -1.0000000000 0.0000000000 53.5221020047 0.0000000000 0.0000000000 -1.0000000000 59.7480000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-06-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.6.0117 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 B GLN 17 ? B O B HOH 202 ? ? 1.75 2 1 N A GLY 2 ? ? C1 A MYR 101 ? ? 2.04 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 236 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 207 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_565 _pdbx_validate_symm_contact.dist 1.90 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 4 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 172.45 _pdbx_validate_torsion.psi 107.94 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 6 ? OG ? A SER 5 OG 2 1 Y 1 A GLU 70 ? CG ? A GLU 69 CG 3 1 Y 1 A GLU 70 ? CD ? A GLU 69 CD 4 1 Y 1 A GLU 70 ? OE1 ? A GLU 69 OE1 5 1 Y 1 A GLU 70 ? OE2 ? A GLU 69 OE2 6 1 Y 1 A LYS 78 ? CE ? A LYS 77 CE 7 1 Y 1 A LYS 78 ? NZ ? A LYS 77 NZ 8 1 Y 1 B LYS 78 ? CE ? B LYS 77 CE 9 1 Y 1 B LYS 78 ? NZ ? B LYS 77 NZ 10 1 N 1 A MYR 101 ? O2 ? C MYR 1 O2 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Czech Science Foundation (GA CR)' 'Czech Republic' 15-05677S 1 NPU 'Czech Republic' LO1302 2 NPU 'Czech Republic' LO1304 3 RVO 'Czech Republic' 'RVO 61388963' 4 RVO 'Czech Republic' 'RVO 68378050' 5 RVO 'Czech Republic' 'RVO: 68378050' 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MYRISTIC ACID' MYR 3 'DI(HYDROXYETHYL)ETHER' PEG 4 water HOH #