HEADER OXIDOREDUCTASE 01-FEB-16 5HYM TITLE 3-HYDROXYBENZOATE 6-HYDROXYLASE FROM RHODOCOCCUS JOSTII IN COMPLEX TITLE 2 WITH PHOSPHATIDYLINOSITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SALICYLATE MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS JOSTII (STRAIN RHA1); SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 GENE: RHA1_RO01869; SOURCE 5 EXPRESSION_SYSTEM: RHODOCOCCUS JOSTII; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 101510; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RHA1 #2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: Q2+ KEYWDS FLAVOPROTEIN, MONOOXYGENASE, PHOSPHOLIPID, RHODOCOCCUS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ORRU,S.MONTERSINO,A.MATTEVI,W.J.H.VAN BERKEL REVDAT 4 10-JAN-24 5HYM 1 ATOM REVDAT 3 13-SEP-17 5HYM 1 REMARK REVDAT 2 12-JUL-17 5HYM 1 REVDAT 1 01-FEB-17 5HYM 0 JRNL AUTH S.MONTERSINO,E.TE POELE,R.ORRU,A.H.WESTPHAL,A.BARENDREGT, JRNL AUTH 2 A.J.R.HECK,R.VAN DER GEIZE,L.DIJKHUIZEN,A.MATTEVI, JRNL AUTH 3 W.J.H.VAN BERKEL JRNL TITL 3-HYDROXYBENZOATE 6-HYDROXYLASE FROM RHODOCOCCUS JOSTII RHA1 JRNL TITL 2 CONTAINS A PHOSPHATIDYLINOSITOL COFACTOR. JRNL REF FRONT MICROBIOL V. 8 1110 2017 JRNL REFN ESSN 1664-302X JRNL PMID 28670303 JRNL DOI 10.3389/FMICB.2017.01110 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.404 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3260 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2989 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4430 ; 1.753 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6857 ; 1.025 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 6.944 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;35.940 ;23.185 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;14.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3708 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 779 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 2.444 ; 3.177 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1578 ; 2.444 ; 3.176 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1972 ; 3.818 ; 4.756 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5HYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 4BJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2 M LITHIUM SULPHATE, REMARK 280 0.1 M TRIS-HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 53.49000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.69500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.84750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.49000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.54250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.54250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.49000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.84750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 53.49000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.69500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 53.49000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.69500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 53.49000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 107.54250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.84750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.49000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.84750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 107.54250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 53.49000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 53.49000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.69500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 398 REMARK 465 SER A 399 REMARK 465 LYS A 400 REMARK 465 LEU A 401 REMARK 465 GLY A 402 REMARK 465 PRO A 403 REMARK 465 GLU A 404 REMARK 465 GLN A 405 REMARK 465 LYS A 406 REMARK 465 LEU A 407 REMARK 465 ILE A 408 REMARK 465 SER A 409 REMARK 465 GLU A 410 REMARK 465 GLU A 411 REMARK 465 ASP A 412 REMARK 465 LEU A 413 REMARK 465 ASN A 414 REMARK 465 SER A 415 REMARK 465 ALA A 416 REMARK 465 VAL A 417 REMARK 465 ASP A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 377 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 167 133.16 -37.66 REMARK 500 GLU A 196 98.12 -67.62 REMARK 500 ASN A 242 66.98 -104.94 REMARK 500 ARG A 271 133.56 -173.41 REMARK 500 LEU A 390 -67.20 -90.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 T7X A 502 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T7X A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 DBREF 5HYM A 1 399 UNP Q0SFK6 Q0SFK6_RHOJR 1 399 SEQADV 5HYM LYS A 400 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM LEU A 401 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM GLY A 402 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM PRO A 403 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM GLU A 404 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM GLN A 405 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM LYS A 406 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM LEU A 407 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM ILE A 408 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM SER A 409 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM GLU A 410 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM GLU A 411 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM ASP A 412 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM LEU A 413 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM ASN A 414 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM SER A 415 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM ALA A 416 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM VAL A 417 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM ASP A 418 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM HIS A 419 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM HIS A 420 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM HIS A 421 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM HIS A 422 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM HIS A 423 UNP Q0SFK6 EXPRESSION TAG SEQADV 5HYM HIS A 424 UNP Q0SFK6 EXPRESSION TAG SEQRES 1 A 424 MET SER ASN LEU GLN ASP ALA ARG ILE ILE ILE ALA GLY SEQRES 2 A 424 GLY GLY ILE GLY GLY ALA ALA ASN ALA LEU ALA LEU ALA SEQRES 3 A 424 GLN LYS GLY ALA ASN VAL THR LEU PHE GLU ARG ALA SER SEQRES 4 A 424 GLU PHE GLY GLU VAL GLY ALA GLY LEU GLN VAL GLY PRO SEQRES 5 A 424 HIS GLY ALA ARG ILE LEU ASP SER TRP GLY VAL LEU ASP SEQRES 6 A 424 ASP VAL LEU SER ARG ALA PHE LEU PRO LYS ASN ILE VAL SEQRES 7 A 424 PHE ARG ASP ALA ILE THR ALA GLU VAL LEU THR LYS ILE SEQRES 8 A 424 ASP LEU GLY SER GLU PHE ARG GLY ARG TYR GLY GLY PRO SEQRES 9 A 424 TYR PHE VAL THR HIS ARG SER ASP LEU HIS ALA THR LEU SEQRES 10 A 424 VAL ASP ALA ALA ARG ALA ALA GLY ALA GLU LEU HIS THR SEQRES 11 A 424 GLY VAL THR VAL THR ASP VAL ILE THR GLU GLY ASP LYS SEQRES 12 A 424 ALA ILE VAL SER THR ASP ASP GLY ARG THR HIS GLU ALA SEQRES 13 A 424 ASP ILE ALA LEU GLY MET ASP GLY LEU LYS SER ARG LEU SEQRES 14 A 424 ARG GLU LYS ILE SER GLY ASP GLU PRO VAL SER SER GLY SEQRES 15 A 424 TYR ALA ALA TYR ARG GLY THR THR PRO TYR ARG ASP VAL SEQRES 16 A 424 GLU LEU ASP GLU ASP ILE GLU ASP VAL VAL GLY TYR ILE SEQRES 17 A 424 GLY PRO ARG CYS HIS PHE ILE GLN TYR PRO LEU ARG GLY SEQRES 18 A 424 GLY GLU MET LEU ASN GLN VAL ALA VAL PHE GLU SER PRO SEQRES 19 A 424 GLY PHE LYS ASN GLY ILE GLU ASN TRP GLY GLY PRO GLU SEQRES 20 A 424 GLU LEU GLU GLN ALA TYR ALA HIS CYS HIS GLU ASN VAL SEQRES 21 A 424 ARG ARG GLY ILE ASP TYR LEU TRP LYS ASP ARG TRP TRP SEQRES 22 A 424 PRO MET TYR ASP ARG GLU PRO ILE GLU ASN TRP VAL ASP SEQRES 23 A 424 GLY ARG MET ILE LEU LEU GLY ASP ALA ALA HIS PRO PRO SEQRES 24 A 424 LEU GLN TYR LEU ALA SER GLY ALA VAL MET ALA ILE GLU SEQRES 25 A 424 ASP ALA LYS CYS LEU ALA ASP TYR ALA ALA GLU ASP PHE SEQRES 26 A 424 SER THR GLY GLY ASN SER ALA TRP PRO GLN ILE LEU LYS SEQRES 27 A 424 GLU VAL ASN THR GLU ARG ALA PRO ARG CYS ASN ARG ILE SEQRES 28 A 424 LEU THR THR GLY ARG MET TRP GLY GLU LEU TRP HIS LEU SEQRES 29 A 424 ASP GLY THR ALA ARG ILE ALA ARG ASN GLU LEU PHE ARG SEQRES 30 A 424 THR ARG ASP THR SER SER TYR LYS TYR THR ASP TRP LEU SEQRES 31 A 424 TRP GLY TYR SER SER ASP ARG ALA SER LYS LEU GLY PRO SEQRES 32 A 424 GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SER ALA SEQRES 33 A 424 VAL ASP HIS HIS HIS HIS HIS HIS HET FAD A 501 53 HET T7X A 502 52 HET CL A 503 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM T7X PHOSPHATIDYLINOSITOL HETNAM CL CHLORIDE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 T7X C47 H83 O13 P FORMUL 4 CL CL 1- FORMUL 5 HOH *14(H2 O) HELIX 1 AA1 GLY A 15 LYS A 28 1 14 HELIX 2 AA2 GLY A 51 TRP A 61 1 11 HELIX 3 AA3 VAL A 63 SER A 69 1 7 HELIX 4 AA4 GLY A 94 GLY A 102 1 9 HELIX 5 AA5 ARG A 110 ALA A 124 1 15 HELIX 6 AA6 ARG A 168 ILE A 173 5 6 HELIX 7 AA7 ARG A 220 GLY A 222 5 3 HELIX 8 AA8 SER A 233 ASN A 238 1 6 HELIX 9 AA9 GLY A 245 GLU A 247 5 3 HELIX 10 AB1 GLU A 248 ALA A 254 1 7 HELIX 11 AB2 HIS A 257 ASP A 265 1 9 HELIX 12 AB3 GLY A 293 ALA A 296 5 4 HELIX 13 AB4 LEU A 300 ALA A 304 5 5 HELIX 14 AB5 SER A 305 GLY A 329 1 25 HELIX 15 AB6 ALA A 332 HIS A 363 1 32 HELIX 16 AB7 ASP A 365 ARG A 379 1 15 HELIX 17 AB8 THR A 387 GLY A 392 1 6 SHEET 1 AA1 6 GLU A 127 HIS A 129 0 SHEET 2 AA1 6 ASN A 31 PHE A 35 1 N VAL A 32 O GLU A 127 SHEET 3 AA1 6 ARG A 8 ALA A 12 1 N ILE A 9 O ASN A 31 SHEET 4 AA1 6 ILE A 158 GLY A 161 1 O LEU A 160 N ALA A 12 SHEET 5 AA1 6 MET A 289 LEU A 291 1 O ILE A 290 N GLY A 161 SHEET 6 AA1 6 VAL A 285 ASP A 286 -1 N ASP A 286 O MET A 289 SHEET 1 AA2 2 GLY A 47 VAL A 50 0 SHEET 2 AA2 2 PHE A 106 HIS A 109 -1 O PHE A 106 N VAL A 50 SHEET 1 AA3 7 VAL A 87 ASP A 92 0 SHEET 2 AA3 7 ASN A 76 ASP A 81 -1 N PHE A 79 O LEU A 88 SHEET 3 AA3 7 VAL A 204 GLY A 209 1 O VAL A 204 N VAL A 78 SHEET 4 AA3 7 CYS A 212 LEU A 219 -1 O PHE A 214 N TYR A 207 SHEET 5 AA3 7 MET A 224 GLU A 232 -1 O ASN A 226 N TYR A 217 SHEET 6 AA3 7 VAL A 179 PRO A 191 -1 N GLY A 188 O GLN A 227 SHEET 7 AA3 7 TRP A 273 ASP A 277 -1 O TRP A 273 N ALA A 185 SHEET 1 AA4 3 VAL A 134 GLU A 140 0 SHEET 2 AA4 3 LYS A 143 THR A 148 -1 O ILE A 145 N ILE A 138 SHEET 3 AA4 3 THR A 153 ALA A 156 -1 O ALA A 156 N ALA A 144 SITE 1 AC1 25 GLY A 13 GLY A 15 ILE A 16 GLY A 17 SITE 2 AC1 25 PHE A 35 GLU A 36 ARG A 37 LEU A 48 SITE 3 AC1 25 GLN A 49 ARG A 110 VAL A 134 MET A 162 SITE 4 AC1 25 ASP A 163 GLY A 164 ARG A 187 GLY A 293 SITE 5 AC1 25 ASP A 294 ALA A 304 SER A 305 GLY A 306 SITE 6 AC1 25 ALA A 307 VAL A 308 CL A 503 HOH A 602 SITE 7 AC1 25 HOH A 607 SITE 1 AC2 7 ARG A 100 LEU A 303 ARG A 350 TRP A 358 SITE 2 AC2 7 LYS A 385 TYR A 386 TRP A 389 SITE 1 AC3 5 GLN A 301 SER A 305 GLY A 306 FAD A 501 SITE 2 AC3 5 HOH A 613 CRYST1 106.980 106.980 143.390 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006974 0.00000