HEADER TRANSCRIPTION FACTOR 02-FEB-16 5HYZ TITLE CRYSTAL STRUCTURE OF SCL7 IN ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRAS FAMILY TRANSCRIPTION FACTOR CONTAINING PROTEIN, COMPND 3 EXPRESSED; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: GRAS DOMAIN, UNP RESIDUES 204-578; COMPND 6 SYNONYM: GRAS FAMILY TRANSCRIPTION FACTOR,PUTATIVE,OS03G0723000 COMPND 7 PROTEIN,CDNA CLONE:001-125-A04,FULL INSERT SEQUENCE,CDNA COMPND 8 CLONE:J033051K20,CDNA CLONE:J033110P03; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OS03G0723000, LOC_OS03G51330, OSNPB_030723000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS ROSSMANN FOLD HELIX BUNDLE, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU,S.LI,Y.ZHAO,L.SUN REVDAT 2 29-JUN-16 5HYZ 1 JRNL REVDAT 1 27-APR-16 5HYZ 0 JRNL AUTH S.LI,Y.ZHAO,Z.ZHAO,X.WU,L.SUN,Q.LIU,Y.WU JRNL TITL CRYSTAL STRUCTURE OF THE GRAS DOMAIN OF SCARECROW-LIKE7 IN JRNL TITL 2 ORYZA SATIVA. JRNL REF PLANT CELL V. 28 1025 2016 JRNL REFN ESSN 1532-298X JRNL PMID 27081181 JRNL DOI 10.1105/TPC.16.00018 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 42785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1869 - 4.3883 0.98 3073 150 0.1697 0.1778 REMARK 3 2 4.3883 - 3.4843 1.00 2983 145 0.1530 0.1695 REMARK 3 3 3.4843 - 3.0442 1.00 2963 145 0.1888 0.2084 REMARK 3 4 3.0442 - 2.7661 1.00 2940 144 0.2053 0.2549 REMARK 3 5 2.7661 - 2.5679 1.00 2940 141 0.1919 0.2036 REMARK 3 6 2.5679 - 2.4165 1.00 2931 143 0.1870 0.2222 REMARK 3 7 2.4165 - 2.2955 1.00 2897 143 0.1791 0.2023 REMARK 3 8 2.2955 - 2.1956 1.00 2909 141 0.1888 0.2312 REMARK 3 9 2.1956 - 2.1111 0.99 2901 141 0.1803 0.2450 REMARK 3 10 2.1111 - 2.0383 0.99 2892 141 0.1851 0.2655 REMARK 3 11 2.0383 - 1.9746 0.99 2874 139 0.1869 0.2405 REMARK 3 12 1.9746 - 1.9181 0.99 2884 140 0.1876 0.2513 REMARK 3 13 1.9181 - 1.8676 0.98 2850 141 0.2011 0.2352 REMARK 3 14 1.8676 - 1.8221 0.96 2759 135 0.2151 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2880 REMARK 3 ANGLE : 1.729 3919 REMARK 3 CHIRALITY : 0.100 443 REMARK 3 PLANARITY : 0.008 508 REMARK 3 DIHEDRAL : 12.739 1052 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 10% ISOPROPANOL, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.84700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.84700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.59400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.52700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.59400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.52700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.84700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.59400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.52700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.84700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.59400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.52700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.84700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 851 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 921 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 961 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 962 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 262 REMARK 465 GLY A 263 REMARK 465 ALA A 264 REMARK 465 PRO A 265 REMARK 465 PRO A 266 REMARK 465 SER A 267 REMARK 465 ALA A 268 REMARK 465 GLU A 269 REMARK 465 PRO A 270 REMARK 465 ASP A 271 REMARK 465 ALA A 272 REMARK 465 ARG A 273 REMARK 465 PHE A 274 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MSE A 511 SE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 861 O HOH A 896 1.92 REMARK 500 O HOH A 602 O HOH A 783 2.12 REMARK 500 O HOH A 702 O HOH A 816 2.15 REMARK 500 O HOH A 613 O HOH A 784 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 626 O HOH A 682 3556 2.05 REMARK 500 O HOH A 634 O HOH A 874 4566 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 388 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 MSE A 411 CG - SE - CE ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 322 -71.14 -107.45 REMARK 500 GLN A 413 -45.16 -135.42 REMARK 500 ASN A 450 -87.73 -115.68 REMARK 500 MSE A 490 -64.78 -104.74 REMARK 500 ASP A 547 -173.27 -63.41 REMARK 500 ALA A 560 29.65 -145.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 962 DISTANCE = 6.31 ANGSTROMS DBREF 5HYZ A 204 578 UNP Q53K16 Q53K16_ORYSJ 204 578 SEQRES 1 A 375 SER ALA PRO ILE LEU GLN SER LEU LEU SER CYS SER ARG SEQRES 2 A 375 ALA ALA ALA THR ASP PRO GLY LEU ALA ALA ALA GLU LEU SEQRES 3 A 375 ALA SER VAL ARG ALA ALA ALA THR ASP ALA GLY ASP PRO SEQRES 4 A 375 SER GLU ARG LEU ALA PHE TYR PHE ALA ASP ALA LEU SER SEQRES 5 A 375 ARG ARG LEU ALA CYS GLY THR GLY ALA PRO PRO SER ALA SEQRES 6 A 375 GLU PRO ASP ALA ARG PHE ALA SER ASP GLU LEU THR LEU SEQRES 7 A 375 CYS TYR LYS THR LEU ASN ASP ALA CYS PRO TYR SER LYS SEQRES 8 A 375 PHE ALA HIS LEU THR ALA ASN GLN ALA ILE LEU GLU ALA SEQRES 9 A 375 THR GLY ALA ALA THR LYS ILE HIS ILE VAL ASP PHE GLY SEQRES 10 A 375 ILE VAL GLN GLY ILE GLN TRP ALA ALA LEU LEU GLN ALA SEQRES 11 A 375 LEU ALA THR ARG PRO GLU GLY LYS PRO THR ARG ILE ARG SEQRES 12 A 375 ILE THR GLY VAL PRO SER PRO LEU LEU GLY PRO GLN PRO SEQRES 13 A 375 ALA ALA SER LEU ALA ALA THR ASN THR ARG LEU ARG ASP SEQRES 14 A 375 PHE ALA LYS LEU LEU GLY VAL ASP PHE GLU PHE VAL PRO SEQRES 15 A 375 LEU LEU ARG PRO VAL HIS GLU LEU ASN LYS SER ASP PHE SEQRES 16 A 375 LEU VAL GLU PRO ASP GLU ALA VAL ALA VAL ASN PHE MSE SEQRES 17 A 375 LEU GLN LEU TYR HIS LEU LEU GLY ASP SER ASP GLU LEU SEQRES 18 A 375 VAL ARG ARG VAL LEU ARG LEU ALA LYS SER LEU SER PRO SEQRES 19 A 375 ALA VAL VAL THR LEU GLY GLU TYR GLU VAL SER LEU ASN SEQRES 20 A 375 ARG ALA GLY PHE VAL ASP ARG PHE ALA ASN ALA LEU SER SEQRES 21 A 375 TYR TYR ARG SER LEU PHE GLU SER LEU ASP VAL ALA MSE SEQRES 22 A 375 THR ARG ASP SER PRO GLU ARG VAL ARG VAL GLU ARG TRP SEQRES 23 A 375 MSE PHE GLY GLU ARG ILE GLN ARG ALA VAL GLY PRO GLU SEQRES 24 A 375 GLU GLY ALA ASP ARG THR GLU ARG MSE ALA GLY SER SER SEQRES 25 A 375 GLU TRP GLN THR LEU MSE GLU TRP CYS GLY PHE GLU PRO SEQRES 26 A 375 VAL PRO LEU SER ASN TYR ALA ARG SER GLN ALA ASP LEU SEQRES 27 A 375 LEU LEU TRP ASN TYR ASP SER LYS TYR LYS TYR SER LEU SEQRES 28 A 375 VAL GLU LEU PRO PRO ALA PHE LEU SER LEU ALA TRP GLU SEQRES 29 A 375 LYS ARG PRO LEU LEU THR VAL SER ALA TRP ARG MODRES 5HYZ MSE A 411 MET MODIFIED RESIDUE MODRES 5HYZ MSE A 476 MET MODIFIED RESIDUE MODRES 5HYZ MSE A 490 MET MODIFIED RESIDUE MODRES 5HYZ MSE A 511 MET MODIFIED RESIDUE MODRES 5HYZ MSE A 521 MET MODIFIED RESIDUE HET MSE A 411 8 HET MSE A 476 8 HET MSE A 490 8 HET MSE A 511 8 HET MSE A 521 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *362(H2 O) HELIX 1 AA1 ALA A 205 THR A 220 1 16 HELIX 2 AA2 ALA A 225 ALA A 236 1 12 HELIX 3 AA3 ASP A 241 GLY A 261 1 21 HELIX 4 AA4 SER A 276 CYS A 290 1 15 HELIX 5 AA5 PRO A 291 THR A 308 1 18 HELIX 6 AA6 GLY A 324 THR A 336 1 13 HELIX 7 AA7 PRO A 353 GLY A 356 5 4 HELIX 8 AA8 PRO A 359 LEU A 377 1 19 HELIX 9 AA9 PRO A 389 LEU A 393 5 5 HELIX 10 AB1 ASN A 394 LEU A 399 5 6 HELIX 11 AB2 GLN A 413 LEU A 418 5 6 HELIX 12 AB3 ASP A 422 LEU A 435 1 14 HELIX 13 AB4 GLY A 453 MSE A 476 1 24 HELIX 14 AB5 SER A 480 MSE A 490 1 11 HELIX 15 AB6 MSE A 490 GLY A 500 1 11 HELIX 16 AB7 GLU A 503 ARG A 507 5 5 HELIX 17 AB8 GLY A 513 CYS A 524 1 12 HELIX 18 AB9 TYR A 534 LEU A 543 1 10 SHEET 1 AA1 7 ASP A 380 PRO A 385 0 SHEET 2 AA1 7 ARG A 344 PRO A 351 1 N GLY A 349 O VAL A 384 SHEET 3 AA1 7 LYS A 313 ILE A 321 1 N ASP A 318 O VAL A 350 SHEET 4 AA1 7 ALA A 405 MSE A 411 1 O ALA A 405 N HIS A 315 SHEET 5 AA1 7 VAL A 439 TYR A 445 1 O THR A 441 N PHE A 410 SHEET 6 AA1 7 ARG A 569 ARG A 578 -1 O THR A 573 N GLU A 444 SHEET 7 AA1 7 GLU A 527 VAL A 529 -1 N GLU A 527 O ARG A 578 SHEET 1 AA2 8 ASP A 380 PRO A 385 0 SHEET 2 AA2 8 ARG A 344 PRO A 351 1 N GLY A 349 O VAL A 384 SHEET 3 AA2 8 LYS A 313 ILE A 321 1 N ASP A 318 O VAL A 350 SHEET 4 AA2 8 ALA A 405 MSE A 411 1 O ALA A 405 N HIS A 315 SHEET 5 AA2 8 VAL A 439 TYR A 445 1 O THR A 441 N PHE A 410 SHEET 6 AA2 8 ARG A 569 ARG A 578 -1 O THR A 573 N GLU A 444 SHEET 7 AA2 8 PHE A 561 TRP A 566 -1 N LEU A 564 O LEU A 571 SHEET 8 AA2 8 TYR A 552 LEU A 557 -1 N SER A 553 O ALA A 565 LINK C PHE A 410 N MSE A 411 1555 1555 1.32 LINK C MSE A 411 N LEU A 412 1555 1555 1.33 LINK C ALA A 475 N MSE A 476 1555 1555 1.33 LINK C MSE A 476 N THR A 477 1555 1555 1.33 LINK C TRP A 489 N MSE A 490 1555 1555 1.32 LINK C MSE A 490 N PHE A 491 1555 1555 1.33 LINK C ARG A 510 N MSE A 511 1555 1555 1.33 LINK C MSE A 511 N ALA A 512 1555 1555 1.34 LINK C LEU A 520 N MSE A 521 1555 1555 1.33 LINK C MSE A 521 N GLU A 522 1555 1555 1.34 CISPEP 1 PRO A 558 PRO A 559 0 -1.96 CRYST1 89.188 179.054 59.694 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016752 0.00000