HEADER VIRAL PROTEIN 02-FEB-16 5HZB TITLE CRYSTAL STRUCTURE OF GII.10 P DOMAIN IN COMPLEX WITH 2-FUCOSYLLACTOSE TITLE 2 (2'FL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS GII.10; SOURCE 3 ORGANISM_TAXID: 747305; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PMBP KEYWDS NOROVIRUS CAPSID, P DOMAIN, HMO, HUMAN MILK, 2-FUCOSYLLACTOSE, VIRUS, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.HANSMAN,A.D.KOROMYSLOVA,B.K.S.SINGH REVDAT 4 10-JAN-24 5HZB 1 HETSYN LINK REVDAT 3 29-JUL-20 5HZB 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 27-APR-16 5HZB 1 JRNL REVDAT 1 02-MAR-16 5HZB 0 JRNL AUTH S.WEICHERT,A.KOROMYSLOVA,B.K.SINGH,S.HANSMAN,S.JENNEWEIN, JRNL AUTH 2 H.SCHROTEN,G.S.HANSMAN JRNL TITL STRUCTURAL BASIS FOR NOROVIRUS INHIBITION BY HUMAN MILK JRNL TITL 2 OLIGOSACCHARIDES. JRNL REF J.VIROL. V. 90 4843 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 26889023 JRNL DOI 10.1128/JVI.03223-15 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 94095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 7571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8246 - 4.8240 0.86 5455 294 0.1340 0.1531 REMARK 3 2 4.8240 - 3.8297 0.80 5097 274 0.1193 0.1465 REMARK 3 3 3.8297 - 3.3458 0.77 4953 245 0.1424 0.1879 REMARK 3 4 3.3458 - 3.0400 0.84 5320 284 0.1564 0.2044 REMARK 3 5 3.0400 - 2.8222 0.83 5288 276 0.1547 0.1917 REMARK 3 6 2.8222 - 2.6558 0.75 4742 261 0.1707 0.1908 REMARK 3 7 2.6558 - 2.5228 0.80 5098 280 0.1630 0.1813 REMARK 3 8 2.5228 - 2.4130 0.83 5295 276 0.1583 0.2021 REMARK 3 9 2.4130 - 2.3201 0.83 5291 265 0.1531 0.2142 REMARK 3 10 2.3201 - 2.2401 0.67 4285 214 0.1823 0.2096 REMARK 3 11 2.2401 - 2.1700 0.74 4694 248 0.1840 0.2007 REMARK 3 12 2.1700 - 2.1080 0.79 5023 256 0.1701 0.1867 REMARK 3 13 2.1080 - 2.0525 0.61 3841 207 0.1838 0.2371 REMARK 3 14 2.0525 - 2.0024 0.72 4635 248 0.1818 0.2172 REMARK 3 15 2.0024 - 1.9569 0.72 4608 237 0.1815 0.2219 REMARK 3 16 1.9569 - 1.9153 0.55 3496 174 0.2422 0.2495 REMARK 3 17 1.9153 - 1.8769 0.55 3467 184 0.2526 0.3211 REMARK 3 18 1.8769 - 1.8415 0.75 4881 256 0.1836 0.1999 REMARK 3 19 1.8415 - 1.8086 0.80 5124 270 0.1616 0.1772 REMARK 3 20 1.8086 - 1.7780 0.81 5046 276 0.1698 0.2125 REMARK 3 21 1.7780 - 1.7493 0.80 5131 265 0.1711 0.1920 REMARK 3 22 1.7493 - 1.7224 0.79 5061 271 0.1857 0.2121 REMARK 3 23 1.7224 - 1.6970 0.78 4963 256 0.1955 0.2309 REMARK 3 24 1.6970 - 1.6731 0.79 5076 263 0.1884 0.2221 REMARK 3 25 1.6731 - 1.6505 0.79 4951 256 0.1959 0.2116 REMARK 3 26 1.6505 - 1.6291 0.79 5063 264 0.2091 0.2520 REMARK 3 27 1.6291 - 1.6087 0.77 4860 261 0.2204 0.2438 REMARK 3 28 1.6087 - 1.5893 0.72 4590 242 0.2243 0.2319 REMARK 3 29 1.5893 - 1.5709 0.76 4927 241 0.2364 0.2569 REMARK 3 30 1.5709 - 1.5532 0.67 4290 227 0.2590 0.2510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5003 REMARK 3 ANGLE : 1.089 6861 REMARK 3 CHIRALITY : 0.046 776 REMARK 3 PLANARITY : 0.006 903 REMARK 3 DIHEDRAL : 11.621 1796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5214 8.8102 11.2471 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.1039 REMARK 3 T33: 0.1245 T12: -0.0118 REMARK 3 T13: -0.0133 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.2571 L22: 0.0575 REMARK 3 L33: 0.7446 L12: -0.0690 REMARK 3 L13: 0.0464 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: 0.0497 S13: 0.0149 REMARK 3 S21: -0.0077 S22: -0.0334 S23: 0.0157 REMARK 3 S31: -0.1161 S32: 0.0786 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2699 9.0418 17.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1025 REMARK 3 T33: 0.1178 T12: 0.0085 REMARK 3 T13: -0.0057 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4185 L22: 0.2188 REMARK 3 L33: 0.4025 L12: -0.0202 REMARK 3 L13: -0.0670 L23: -0.2084 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.0088 S13: 0.0355 REMARK 3 S21: 0.0139 S22: 0.0180 S23: 0.0329 REMARK 3 S31: -0.1174 S32: -0.0684 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8570 -2.4309 -5.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.2009 REMARK 3 T33: 0.1126 T12: -0.0140 REMARK 3 T13: 0.0368 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.3683 L22: 0.2852 REMARK 3 L33: 0.2594 L12: 0.0270 REMARK 3 L13: -0.0584 L23: -0.1132 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.0662 S13: -0.0962 REMARK 3 S21: -0.0719 S22: 0.0084 S23: -0.0218 REMARK 3 S31: 0.0256 S32: 0.1050 S33: 0.0441 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7285 -0.3868 10.6860 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.3290 REMARK 3 T33: 0.2052 T12: 0.0193 REMARK 3 T13: 0.0384 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0164 L22: 0.0219 REMARK 3 L33: -0.0053 L12: 0.0245 REMARK 3 L13: -0.0162 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.3513 S13: 0.3356 REMARK 3 S21: -0.0847 S22: 0.0310 S23: 0.0926 REMARK 3 S31: 0.0175 S32: 0.2334 S33: 0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0076 1.9184 21.0789 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.1199 REMARK 3 T33: 0.1309 T12: 0.0060 REMARK 3 T13: -0.0021 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.0181 L22: 0.0073 REMARK 3 L33: 0.0119 L12: -0.0176 REMARK 3 L13: 0.0011 L23: -0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.0523 S13: 0.0136 REMARK 3 S21: -0.0528 S22: -0.0122 S23: -0.0216 REMARK 3 S31: -0.0884 S32: -0.0132 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 242 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9442 3.2106 27.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1404 REMARK 3 T33: 0.1360 T12: -0.0093 REMARK 3 T13: 0.0172 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0131 L22: -0.0138 REMARK 3 L33: 0.0076 L12: 0.0092 REMARK 3 L13: -0.0181 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.0620 S13: 0.0699 REMARK 3 S21: 0.0049 S22: 0.0420 S23: 0.0230 REMARK 3 S31: 0.0048 S32: 0.0203 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4112 -7.6414 36.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.1527 T22: 0.2372 REMARK 3 T33: 0.1768 T12: 0.0139 REMARK 3 T13: -0.0291 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0116 L22: 0.0119 REMARK 3 L33: 0.0116 L12: 0.0039 REMARK 3 L13: -0.0095 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: -0.1556 S13: -0.1074 REMARK 3 S21: 0.0331 S22: -0.0473 S23: -0.0718 REMARK 3 S31: 0.1026 S32: 0.1699 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6585 -11.1169 18.2591 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1527 REMARK 3 T33: 0.1689 T12: 0.0277 REMARK 3 T13: 0.0062 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: -0.0070 REMARK 3 L33: 0.0289 L12: 0.0228 REMARK 3 L13: 0.0052 L23: 0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.0755 S13: -0.1232 REMARK 3 S21: -0.0352 S22: 0.0238 S23: -0.0155 REMARK 3 S31: 0.0405 S32: 0.1029 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 283 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3027 -14.8845 28.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.1237 REMARK 3 T33: 0.2198 T12: -0.0397 REMARK 3 T13: -0.0203 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.0657 L22: 0.0563 REMARK 3 L33: 0.1082 L12: -0.0019 REMARK 3 L13: 0.0443 L23: 0.0177 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: -0.1498 S13: -0.1597 REMARK 3 S21: 0.0438 S22: -0.0585 S23: 0.0924 REMARK 3 S31: 0.0367 S32: 0.0055 S33: 0.0161 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 302 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9954 -19.1647 21.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.1493 REMARK 3 T33: 0.2510 T12: -0.0003 REMARK 3 T13: -0.0540 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.2318 L22: 0.0427 REMARK 3 L33: 0.3225 L12: 0.0905 REMARK 3 L13: -0.1584 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: 0.1026 S13: -0.2775 REMARK 3 S21: 0.0653 S22: 0.0387 S23: 0.0744 REMARK 3 S31: 0.2577 S32: -0.1315 S33: 0.0384 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3638 -20.4512 20.9971 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1063 REMARK 3 T33: 0.2166 T12: 0.0322 REMARK 3 T13: -0.0474 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.0297 L22: 0.0894 REMARK 3 L33: 0.1459 L12: -0.0395 REMARK 3 L13: 0.0092 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.1812 S12: 0.0694 S13: -0.1499 REMARK 3 S21: -0.1147 S22: 0.0472 S23: 0.0047 REMARK 3 S31: 0.1016 S32: 0.0614 S33: 0.0344 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 328 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5341 -8.6487 25.6888 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1139 REMARK 3 T33: 0.1365 T12: 0.0060 REMARK 3 T13: -0.0038 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.0419 L22: 0.0528 REMARK 3 L33: 0.0563 L12: -0.0441 REMARK 3 L13: -0.0340 L23: -0.0455 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.0007 S13: -0.0986 REMARK 3 S21: -0.0048 S22: 0.0401 S23: 0.0311 REMARK 3 S31: 0.0088 S32: 0.0218 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2762 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 15.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, BIS-TRIS PROPANE, PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.45000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 ASN B 344 REMARK 465 THR B 345 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 465 ASN B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 ARG A 492 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 384 CG CD OE1 NE2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ARG B 492 CG CD NE CZ NH1 NH2 REMARK 470 THR B 519 OG1 CG2 REMARK 470 ARG B 524 CZ NH1 NH2 REMARK 470 GLN B 531 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 946 O HOH B 1022 2.17 REMARK 500 O HOH B 913 O HOH B 968 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 80.44 -152.47 REMARK 500 GLN A 260 49.89 -147.46 REMARK 500 GLN A 384 -28.00 -141.96 REMARK 500 ASN B 252 80.84 -152.97 REMARK 500 GLN B 260 50.14 -147.79 REMARK 500 GLN B 384 -31.05 -142.16 REMARK 500 VAL B 529 -167.71 -127.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1077 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1078 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1038 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B1039 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B1040 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1041 DISTANCE = 6.73 ANGSTROMS DBREF 5HZB A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 5HZB B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQRES 1 A 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 A 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 A 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 A 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 A 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 A 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 A 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 A 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 A 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 A 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 A 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 A 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 A 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 A 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 A 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 A 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 A 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 A 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 A 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 A 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 A 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 A 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 A 315 ALA PRO MET SEQRES 1 B 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 B 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 B 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 B 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 B 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 B 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 B 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 B 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 B 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 B 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 B 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 B 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 B 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 B 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 B 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 B 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 B 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 B 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 B 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 B 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 B 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 B 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 B 315 ALA PRO MET HET GLC C 1 12 HET GAL C 2 11 HET FUC C 3 10 HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO B 601 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GLC C6 H12 O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUC C6 H12 O5 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *719(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 VAL A 346 GLY A 350 5 5 HELIX 4 AA4 THR A 370 LEU A 373 5 4 HELIX 5 AA5 ASP A 403 HIS A 407 5 5 HELIX 6 AA6 PRO A 462 SER A 473 1 12 HELIX 7 AA7 THR B 233 LEU B 237 5 5 HELIX 8 AA8 LEU B 279 ILE B 283 5 5 HELIX 9 AA9 THR B 370 LEU B 373 5 4 HELIX 10 AB1 ASP B 403 HIS B 407 5 5 HELIX 11 AB2 PRO B 462 SER B 473 1 12 SHEET 1 AA1 4 ALA A 456 CYS A 459 0 SHEET 2 AA1 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA1 4 VAL A 248 THR A 251 -1 N VAL A 248 O ARG A 443 SHEET 4 AA1 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 AA2 6 ALA A 456 CYS A 459 0 SHEET 2 AA2 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA2 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 AA2 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 AA2 6 VAL A 480 VAL A 486 -1 N TYR A 485 O LEU A 494 SHEET 6 AA2 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 AA3 8 GLY B 450 TYR B 452 0 SHEET 2 AA3 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 AA3 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 AA3 8 THR A 301 THR A 308 -1 N MET A 305 O ILE A 376 SHEET 5 AA3 8 PHE A 286 VAL A 294 -1 N GLN A 292 O ASN A 304 SHEET 6 AA3 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 AA3 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 AA3 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 AA4 8 GLY A 450 TYR A 452 0 SHEET 2 AA4 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 AA4 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 AA4 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 AA4 8 PHE B 286 VAL B 294 -1 N GLN B 292 O ASN B 304 SHEET 6 AA4 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 AA4 8 GLN B 333 ARG B 341 -1 N TYR B 335 O VAL B 397 SHEET 8 AA4 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 AA5 4 ALA B 456 CYS B 459 0 SHEET 2 AA5 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA5 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 AA5 4 GLY B 513 VAL B 515 -1 O GLY B 513 N THR B 251 SHEET 1 AA6 6 ALA B 456 CYS B 459 0 SHEET 2 AA6 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA6 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 AA6 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 AA6 6 VAL B 480 VAL B 486 -1 N ALA B 481 O LEU B 499 SHEET 6 AA6 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 LINK O4 GLC C 1 C1 GAL C 2 1555 1555 1.44 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.44 CRYST1 65.680 78.900 71.070 90.00 102.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015225 0.000000 0.003316 0.00000 SCALE2 0.000000 0.012674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014400 0.00000