HEADER SIGNALING PROTEIN 03-FEB-16 5I04 TITLE CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,ENDOGLIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THIS PROTEIN IS A CHIMERA. RESIDUES 56-422 ARE FROM E. COMPND 8 COLI MALTOSE BINDING PROTEIN (MBP), CORRESPOND TO RESIDUES 27-393 OF COMPND 9 SWISS-PROT DATABASE ENTRY P0AEX9 AND CONTAIN MUTATIONS I57T, D137A, COMPND 10 K138A, E227A, N228A, A270H, K274H, K294A, A367V, I372V, E414A, E417A, COMPND 11 D418A AND R422N (CORRESPONDING TO I28T, D108A, K109A, E198A, N199A, COMPND 12 A241H, K245H, K265A, A338V, I343V, E385A, E388A, D389A AND R393N IN COMPND 13 P0AEX9). RESIDUES 426-737 ARE FROM HUMAN ENDOGLIN PROTEIN AND COMPND 14 CORRESPOND TO RESIDUES 26-337 OF SWISS-PROT DATABASE ENTRY P17813. COMPND 15 SUBTRACTING 400 FROM THE PDB ENTRY RESIDUE NUMBERING RESULTS IN THE COMPND 16 NUMBERING ACCORDING TO UNIPROT ENTRY P17813. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 83333, 9606; SOURCE 5 CELL: ENDOTHELIAL; SOURCE 6 GENE: MALE, B4034, JW3994, ENG, END; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN, HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 11 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS ORPHAN DOMAIN, ANGIOGENESIS, GLYCOPROTEIN, RECEPTOR, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.SAITO,M.BOKHOVE,D.DE SANCTIS,L.JOVINE REVDAT 5 10-JAN-24 5I04 1 HETSYN REVDAT 4 29-JUL-20 5I04 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 06-SEP-17 5I04 1 REMARK REVDAT 2 14-JUN-17 5I04 1 JRNL REVDAT 1 07-JUN-17 5I04 0 JRNL AUTH T.SAITO,M.BOKHOVE,R.CROCI,S.ZAMORA-CABALLERO,L.HAN, JRNL AUTH 2 M.LETARTE,D.DE SANCTIS,L.JOVINE JRNL TITL STRUCTURAL BASIS OF THE HUMAN ENDOGLIN-BMP9 INTERACTION: JRNL TITL 2 INSIGHTS INTO BMP SIGNALING AND HHT1. JRNL REF CELL REP V. 19 1917 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28564608 JRNL DOI 10.1016/J.CELREP.2017.05.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.GOUGOS,M.LETARTE REMARK 1 TITL PRIMARY STRUCTURE OF ENDOGLIN, AN RGD-CONTAINING REMARK 1 TITL 2 GLYCOPROTEIN OF HUMAN ENDOTHELIAL CELLS. REMARK 1 REF J. BIOL. CHEM. V. 265 8361 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 1692830 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.CASTONGUAY,E.D.WERNER,R.G.MATTHEWS,E.PRESMAN,A.W.MULIVOR, REMARK 1 AUTH 2 N.SOLBAN,D.SAKO,R.S.PEARSALL,K.W.UNDERWOOD,J.SEEHRA,R.KUMAR, REMARK 1 AUTH 3 A.V.GRINBERG REMARK 1 TITL SOLUBLE ENDOGLIN SPECIFICALLY BINDS BONE MORPHOGENETIC REMARK 1 TITL 2 PROTEINS 9 AND 10 VIA ITS ORPHAN DOMAIN, INHIBITS BLOOD REMARK 1 TITL 3 VESSEL FORMATION, AND SUPPRESSES TUMOR GROWTH. REMARK 1 REF J. BIOL. CHEM. V. 286 30034 2011 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 21737454 REMARK 1 DOI 10.1074/JBC.M111.260133 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.ALT,L.MIGUEL-ROMERO,J.DONDERIS,M.ARISTORENA,F.J.BLANCO, REMARK 1 AUTH 2 A.ROUND,V.RUBIO,C.BERNABEU,A.MARINA REMARK 1 TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO ENDOGLIN LIGAND REMARK 1 TITL 2 RECOGNITION AND BINDING. REMARK 1 REF PLOS ONE V. 7 29948 2012 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 22347366 REMARK 1 DOI 10.1371/JOURNAL.PONE.0029948 REMARK 1 REFERENCE 4 REMARK 1 AUTH O.NOLAN-STEVAUX,W.ZHONG,S.CULP,K.SHAFFER,J.HOOVER, REMARK 1 AUTH 2 D.WICKRAMASINGHE,A.RUEFLI-BRASSE REMARK 1 TITL ENDOGLIN REQUIREMENT FOR BMP9 SIGNALING IN ENDOTHELIAL CELLS REMARK 1 TITL 2 REVEALS NEW MECHANISM OF ACTION FOR SELECTIVE ANTI-ENDOGLIN REMARK 1 TITL 3 ANTIBODIES. REMARK 1 REF PLOS ONE V. 7 50920 2012 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23300529 REMARK 1 DOI 10.1371/JOURNAL.PONE.0050920 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7453 - 5.5375 0.98 2719 126 0.1866 0.2290 REMARK 3 2 5.5375 - 4.3964 0.99 2664 147 0.1589 0.1884 REMARK 3 3 4.3964 - 3.8410 1.00 2719 145 0.1800 0.2127 REMARK 3 4 3.8410 - 3.4899 1.00 2674 142 0.2056 0.2851 REMARK 3 5 3.4899 - 3.2399 0.99 2673 131 0.2413 0.2922 REMARK 3 6 3.2399 - 3.0489 0.99 2685 119 0.2675 0.2976 REMARK 3 7 3.0489 - 2.8962 0.99 2649 159 0.2885 0.3678 REMARK 3 8 2.8962 - 2.7702 0.99 2667 115 0.3189 0.3538 REMARK 3 9 2.7702 - 2.6635 0.99 2665 128 0.3336 0.3760 REMARK 3 10 2.6635 - 2.5716 0.99 2669 154 0.3530 0.3998 REMARK 3 11 2.5716 - 2.4912 0.99 2618 151 0.3696 0.3996 REMARK 3 12 2.4912 - 2.4200 0.98 2661 119 0.3889 0.4390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5309 REMARK 3 ANGLE : 0.554 7226 REMARK 3 CHIRALITY : 0.042 822 REMARK 3 PLANARITY : 0.004 928 REMARK 3 DIHEDRAL : 10.818 3175 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESI 54:425) OR CHAIN X REMARK 3 ORIGIN FOR THE GROUP (A): 33.3966 58.6382 80.0463 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.8086 REMARK 3 T33: 0.5765 T12: 0.0052 REMARK 3 T13: -0.0038 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.2049 L22: 1.2947 REMARK 3 L33: 0.5482 L12: -0.2467 REMARK 3 L13: 0.1275 L23: -0.1446 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: 0.0979 S13: 0.0610 REMARK 3 S21: 0.1068 S22: 0.1763 S23: 0.0687 REMARK 3 S31: 0.0773 S32: 0.4121 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESI 426:446 OR RESI 600:728) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7594 30.8741 54.9932 REMARK 3 T TENSOR REMARK 3 T11: 0.4610 T22: 0.6840 REMARK 3 T33: 0.5176 T12: 0.0477 REMARK 3 T13: -0.0210 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.6940 L22: 0.7497 REMARK 3 L33: 1.0518 L12: 0.1446 REMARK 3 L13: 0.1152 L23: 0.0552 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: -0.0479 S13: -0.0377 REMARK 3 S21: 0.0067 S22: 0.0056 S23: 0.0278 REMARK 3 S31: 0.0317 S32: -0.1893 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESI 447:599 OR RESI 1000) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5926 30.3732 69.2930 REMARK 3 T TENSOR REMARK 3 T11: 0.4936 T22: 0.4577 REMARK 3 T33: 0.5382 T12: -0.0060 REMARK 3 T13: -0.0032 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.7290 L22: 0.7883 REMARK 3 L33: 1.0039 L12: -0.0937 REMARK 3 L13: -0.3735 L23: 0.2832 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0854 S13: 0.0211 REMARK 3 S21: -0.0499 S22: 0.0967 S23: -0.0590 REMARK 3 S31: -0.1164 S32: 0.0136 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000215898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (VERSION NOVEMBER 3, 2014) REMARK 200 DATA SCALING SOFTWARE : XSCALE (VERSION NOVEMBER 3, 2014 REMARK 200 BUILT=20141103) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 45.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 11.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.81100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.5.6) REMARK 200 STARTING MODEL: 3SEX, 3SET, 4WRN REMARK 200 REMARK 200 REMARK: DROPLET REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1000, 0.1 M TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.20667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.31000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.10333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 100.51667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 52 REMARK 465 THR A 53 REMARK 465 ASN A 488 REMARK 465 GLY A 489 REMARK 465 THR A 490 REMARK 465 TRP A 491 REMARK 465 GLY A 626 REMARK 465 HIS A 627 REMARK 465 SER A 628 REMARK 465 SER A 729 REMARK 465 CYS A 730 REMARK 465 GLY A 731 REMARK 465 GLY A 732 REMARK 465 ARG A 733 REMARK 465 LEU A 734 REMARK 465 GLN A 735 REMARK 465 THR A 736 REMARK 465 SER A 737 REMARK 465 HIS A 738 REMARK 465 HIS A 739 REMARK 465 HIS A 740 REMARK 465 HIS A 741 REMARK 465 HIS A 742 REMARK 465 HIS A 743 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 110 -157.47 -96.66 REMARK 500 ALA A 223 -70.89 -88.28 REMARK 500 ASP A 264 -169.82 -127.97 REMARK 500 TYR A 338 -60.57 -127.79 REMARK 500 PRO A 515 85.32 -65.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HZW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 IN REMARK 900 COMPLEX WITH BMP9 REMARK 900 RELATED ID: 5HZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ZONA PELLUCIDA MODULE OF HUMAN ENDOGLIN/ REMARK 900 CD105 REMARK 900 RELATED ID: 5I05 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN BMP9 AT 1.87 A RESOLUTION DBREF 5I04 A 56 422 UNP P0AEX9 MALE_ECOLI 27 393 DBREF 5I04 A 426 737 UNP P17813 EGLN_HUMAN 26 337 SEQADV 5I04 GLU A 52 UNP P0AEX9 EXPRESSION TAG SEQADV 5I04 THR A 53 UNP P0AEX9 EXPRESSION TAG SEQADV 5I04 GLY A 54 UNP P0AEX9 EXPRESSION TAG SEQADV 5I04 THR A 55 UNP P0AEX9 EXPRESSION TAG SEQADV 5I04 ALA A 137 UNP P0AEX9 ASP 108 ENGINEERED MUTATION SEQADV 5I04 ALA A 138 UNP P0AEX9 LYS 109 ENGINEERED MUTATION SEQADV 5I04 ALA A 227 UNP P0AEX9 GLU 198 ENGINEERED MUTATION SEQADV 5I04 ALA A 228 UNP P0AEX9 ASN 199 ENGINEERED MUTATION SEQADV 5I04 HIS A 270 UNP P0AEX9 ALA 241 ENGINEERED MUTATION SEQADV 5I04 HIS A 274 UNP P0AEX9 LYS 245 ENGINEERED MUTATION SEQADV 5I04 ALA A 294 UNP P0AEX9 LYS 265 ENGINEERED MUTATION SEQADV 5I04 VAL A 367 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5I04 VAL A 372 UNP P0AEX9 ILE 343 ENGINEERED MUTATION SEQADV 5I04 ALA A 414 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 5I04 ALA A 417 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 5I04 ALA A 418 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 5I04 ASN A 422 UNP P0AEX9 ARG 393 ENGINEERED MUTATION SEQADV 5I04 ALA A 423 UNP P0AEX9 LINKER SEQADV 5I04 ALA A 424 UNP P0AEX9 LINKER SEQADV 5I04 ALA A 425 UNP P0AEX9 LINKER SEQADV 5I04 HIS A 738 UNP P17813 EXPRESSION TAG SEQADV 5I04 HIS A 739 UNP P17813 EXPRESSION TAG SEQADV 5I04 HIS A 740 UNP P17813 EXPRESSION TAG SEQADV 5I04 HIS A 741 UNP P17813 EXPRESSION TAG SEQADV 5I04 HIS A 742 UNP P17813 EXPRESSION TAG SEQADV 5I04 HIS A 743 UNP P17813 EXPRESSION TAG SEQRES 1 A 692 GLU THR GLY THR LYS ILE GLU GLU GLY LYS LEU VAL ILE SEQRES 2 A 692 TRP ILE ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU SEQRES 3 A 692 VAL GLY LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL SEQRES 4 A 692 THR VAL GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO SEQRES 5 A 692 GLN VAL ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE SEQRES 6 A 692 TRP ALA HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY SEQRES 7 A 692 LEU LEU ALA GLU ILE THR PRO ALA ALA ALA PHE GLN ASP SEQRES 8 A 692 LYS LEU TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN SEQRES 9 A 692 GLY LYS LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SEQRES 10 A 692 SER LEU ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO SEQRES 11 A 692 LYS THR TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU SEQRES 12 A 692 LYS ALA LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN SEQRES 13 A 692 GLU PRO TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY SEQRES 14 A 692 GLY TYR ALA PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE SEQRES 15 A 692 LYS ASP VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY SEQRES 16 A 692 LEU THR PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET SEQRES 17 A 692 ASN ALA ASP THR ASP TYR SER ILE ALA GLU HIS ALA PHE SEQRES 18 A 692 ASN HIS GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP SEQRES 19 A 692 ALA TRP SER ASN ILE ASP THR SER ALA VAL ASN TYR GLY SEQRES 20 A 692 VAL THR VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS SEQRES 21 A 692 PRO PHE VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SEQRES 22 A 692 SER PRO ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN SEQRES 23 A 692 TYR LEU LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS SEQRES 24 A 692 ASP LYS PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU SEQRES 25 A 692 GLU GLU LEU VAL LYS ASP PRO ARG VAL ALA ALA THR MET SEQRES 26 A 692 GLU ASN ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO SEQRES 27 A 692 GLN MET SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL SEQRES 28 A 692 ILE ASN ALA ALA SER GLY ARG GLN THR VAL ASP ALA ALA SEQRES 29 A 692 LEU ALA ALA ALA GLN THR ASN ALA ALA ALA GLU THR VAL SEQRES 30 A 692 HIS CYS ASP LEU GLN PRO VAL GLY PRO GLU ARG GLY GLU SEQRES 31 A 692 VAL THR TYR THR THR SER GLN VAL SER LYS GLY CYS VAL SEQRES 32 A 692 ALA GLN ALA PRO ASN ALA ILE LEU GLU VAL HIS VAL LEU SEQRES 33 A 692 PHE LEU GLU PHE PRO THR GLY PRO SER GLN LEU GLU LEU SEQRES 34 A 692 THR LEU GLN ALA SER LYS GLN ASN GLY THR TRP PRO ARG SEQRES 35 A 692 GLU VAL LEU LEU VAL LEU SER VAL ASN SER SER VAL PHE SEQRES 36 A 692 LEU HIS LEU GLN ALA LEU GLY ILE PRO LEU HIS LEU ALA SEQRES 37 A 692 TYR ASN SER SER LEU VAL THR PHE GLN GLU PRO PRO GLY SEQRES 38 A 692 VAL ASN THR THR GLU LEU PRO SER PHE PRO LYS THR GLN SEQRES 39 A 692 ILE LEU GLU TRP ALA ALA GLU ARG GLY PRO ILE THR SER SEQRES 40 A 692 ALA ALA GLU LEU ASN ASP PRO GLN SER ILE LEU LEU ARG SEQRES 41 A 692 LEU GLY GLN ALA GLN GLY SER LEU SER PHE CYS MET LEU SEQRES 42 A 692 GLU ALA SER GLN ASP MET GLY ARG THR LEU GLU TRP ARG SEQRES 43 A 692 PRO ARG THR PRO ALA LEU VAL ARG GLY CYS HIS LEU GLU SEQRES 44 A 692 GLY VAL ALA GLY HIS LYS GLU ALA HIS ILE LEU ARG VAL SEQRES 45 A 692 LEU PRO GLY HIS SER ALA GLY PRO ARG THR VAL THR VAL SEQRES 46 A 692 LYS VAL GLU LEU SER CYS ALA PRO GLY ASP LEU ASP ALA SEQRES 47 A 692 VAL LEU ILE LEU GLN GLY PRO PRO TYR VAL SER TRP LEU SEQRES 48 A 692 ILE ASP ALA ASN HIS ASN MET GLN ILE TRP THR THR GLY SEQRES 49 A 692 GLU TYR SER PHE LYS ILE PHE PRO GLU LYS ASN ILE ARG SEQRES 50 A 692 GLY PHE LYS LEU PRO ASP THR PRO GLN GLY LEU LEU GLY SEQRES 51 A 692 GLU ALA ARG MET LEU ASN ALA SER ILE VAL ALA SER PHE SEQRES 52 A 692 VAL GLU LEU PRO LEU ALA SER ILE VAL SER LEU HIS ALA SEQRES 53 A 692 SER SER CYS GLY GLY ARG LEU GLN THR SER HIS HIS HIS SEQRES 54 A 692 HIS HIS HIS HET GLC B 1 12 HET GLC B 2 11 HET NAG A 801 14 HET PGE A 803 10 HET PGE A 804 10 HET PGE A 805 10 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 NAG C8 H15 N O6 FORMUL 4 PGE 3(C6 H14 O4) FORMUL 7 HOH *26(H2 O) HELIX 1 AA1 GLY A 71 GLY A 87 1 17 HELIX 2 AA2 LYS A 97 ALA A 107 1 11 HELIX 3 AA3 ARG A 121 SER A 128 1 8 HELIX 4 AA4 ALA A 137 ASP A 142 1 6 HELIX 5 AA5 TYR A 145 VAL A 152 1 8 HELIX 6 AA6 GLU A 186 LYS A 197 1 12 HELIX 7 AA7 GLU A 208 ASP A 219 1 12 HELIX 8 AA8 ASN A 240 ASN A 256 1 17 HELIX 9 AA9 ASP A 264 HIS A 274 1 11 HELIX 10 AB1 GLY A 283 TRP A 285 5 3 HELIX 11 AB2 ALA A 286 SER A 293 1 8 HELIX 12 AB3 ASN A 327 TYR A 338 1 12 HELIX 13 AB4 THR A 341 LYS A 352 1 12 HELIX 14 AB5 LEU A 359 VAL A 367 1 9 HELIX 15 AB6 ASP A 369 GLY A 382 1 14 HELIX 16 AB7 GLN A 390 SER A 407 1 18 HELIX 17 AB8 THR A 411 ALA A 423 1 13 HELIX 18 AB9 PRO A 542 GLU A 552 1 11 HELIX 19 AC1 THR A 695 LEU A 706 1 12 SHEET 1 AA1 6 VAL A 90 GLU A 93 0 SHEET 2 AA1 6 LEU A 62 TRP A 65 1 N LEU A 62 O THR A 91 SHEET 3 AA1 6 ILE A 114 ALA A 118 1 O PHE A 116 N TRP A 65 SHEET 4 AA1 6 PHE A 313 ILE A 321 -1 O GLY A 320 N ILE A 115 SHEET 5 AA1 6 TYR A 161 GLU A 166 -1 N ILE A 163 O LEU A 317 SHEET 6 AA1 6 ALA A 356 VAL A 357 -1 O ALA A 356 N VAL A 165 SHEET 1 AA2 5 VAL A 90 GLU A 93 0 SHEET 2 AA2 5 LEU A 62 TRP A 65 1 N LEU A 62 O THR A 91 SHEET 3 AA2 5 ILE A 114 ALA A 118 1 O PHE A 116 N TRP A 65 SHEET 4 AA2 5 PHE A 313 ILE A 321 -1 O GLY A 320 N ILE A 115 SHEET 5 AA2 5 GLU A 383 ILE A 384 1 O GLU A 383 N VAL A 314 SHEET 1 AA3 2 ARG A 153 TYR A 154 0 SHEET 2 AA3 2 LYS A 157 LEU A 158 -1 O LYS A 157 N TYR A 154 SHEET 1 AA4 4 SER A 200 LEU A 202 0 SHEET 2 AA4 4 THR A 277 ASN A 282 1 O ALA A 278 N SER A 200 SHEET 3 AA4 4 SER A 169 ASN A 173 -1 N SER A 169 O ASN A 282 SHEET 4 AA4 4 TYR A 297 THR A 300 -1 O THR A 300 N LEU A 170 SHEET 1 AA5 2 TYR A 222 ALA A 227 0 SHEET 2 AA5 2 LYS A 230 GLY A 237 -1 O LYS A 230 N ALA A 227 SHEET 1 AA6 2 THR A 304 PHE A 305 0 SHEET 2 AA6 2 GLN A 308 PRO A 309 -1 O GLN A 308 N PHE A 305 SHEET 1 AA7 6 GLN A 433 PRO A 434 0 SHEET 2 AA7 6 ARG A 605 HIS A 608 -1 O GLY A 606 N GLN A 433 SHEET 3 AA7 6 ILE A 710 PRO A 718 -1 O VAL A 711 N CYS A 607 SHEET 4 AA7 6 GLU A 617 LEU A 624 1 N LEU A 624 O LEU A 717 SHEET 5 AA7 6 ALA A 649 GLN A 654 1 O GLN A 654 N VAL A 623 SHEET 6 AA7 6 GLN A 670 THR A 673 1 O TRP A 672 N LEU A 651 SHEET 1 AA8 6 GLY A 440 THR A 446 0 SHEET 2 AA8 6 ALA A 720 ALA A 727 -1 O SER A 724 N THR A 443 SHEET 3 AA8 6 ARG A 632 LEU A 640 1 N LYS A 637 O VAL A 723 SHEET 4 AA8 6 VAL A 659 ALA A 665 1 O LEU A 662 N VAL A 636 SHEET 5 AA8 6 GLU A 676 PHE A 679 1 O SER A 678 N ILE A 663 SHEET 6 AA8 6 ILE A 687 ARG A 688 -1 O ILE A 687 N TYR A 677 SHEET 1 AA9 7 THR A 535 GLU A 537 0 SHEET 2 AA9 7 LEU A 516 TYR A 520 1 N TYR A 520 O THR A 536 SHEET 3 AA9 7 GLU A 494 VAL A 501 1 N LEU A 497 O HIS A 517 SHEET 4 AA9 7 LEU A 462 GLU A 470 1 N HIS A 465 O VAL A 498 SHEET 5 AA9 7 ILE A 556 ASN A 563 1 O ALA A 560 N PHE A 468 SHEET 6 AA9 7 GLN A 448 VAL A 454 -1 N LYS A 451 O GLU A 561 SHEET 7 AA9 7 GLU A 585 ASP A 589 -1 O SER A 587 N SER A 450 SHEET 1 AB1 5 VAL A 525 PHE A 527 0 SHEET 2 AB1 5 VAL A 505 ALA A 511 1 N LEU A 507 O THR A 526 SHEET 3 AB1 5 SER A 476 GLN A 483 1 N SER A 476 O PHE A 506 SHEET 4 AB1 5 PRO A 565 ARG A 571 1 O LEU A 570 N GLN A 483 SHEET 5 AB1 5 LEU A 594 PRO A 598 -1 O ARG A 597 N GLN A 566 SSBOND 1 CYS A 430 CYS A 607 1555 1555 2.03 SSBOND 2 CYS A 453 CYS A 582 1555 1555 2.03 LINK ND2 ASN A 502 C1 NAG A 801 1555 1555 1.44 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 CRYST1 114.150 114.150 120.620 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008760 0.005058 0.000000 0.00000 SCALE2 0.000000 0.010116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008290 0.00000