HEADER METAL BINDING PROTEIN 08-FEB-16 5I26 TITLE AZURIN T30R1, CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: AZURIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: AZU, PA4922; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BLUE COPPER PROTEIN, SPIN LABEL, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HAGELUEKEN REVDAT 3 10-JAN-24 5I26 1 REMARK REVDAT 2 20-APR-16 5I26 1 JRNL REVDAT 1 13-APR-16 5I26 0 JRNL AUTH D.ABDULLIN,G.HAGELUEKEN,O.SCHIEMANN JRNL TITL DETERMINATION OF NITROXIDE SPIN LABEL CONFORMATIONS VIA JRNL TITL 2 PELDOR AND X-RAY CRYSTALLOGRAPHY. JRNL REF PHYS CHEM CHEM PHYS V. 18 10428 2016 JRNL REFN ESSN 1463-9084 JRNL PMID 27029516 JRNL DOI 10.1039/C6CP01307D REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 39583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3681 - 4.5479 0.82 2506 122 0.1728 0.1729 REMARK 3 2 4.5479 - 3.6107 0.87 2606 137 0.1495 0.1897 REMARK 3 3 3.6107 - 3.1546 0.88 2615 149 0.1753 0.2136 REMARK 3 4 3.1546 - 2.8663 0.90 2669 133 0.2020 0.2609 REMARK 3 5 2.8663 - 2.6609 0.90 2665 163 0.2081 0.2685 REMARK 3 6 2.6609 - 2.5040 0.91 2707 128 0.2014 0.2769 REMARK 3 7 2.5040 - 2.3787 0.92 2765 107 0.2129 0.2693 REMARK 3 8 2.3787 - 2.2751 0.92 2740 131 0.1995 0.2568 REMARK 3 9 2.2751 - 2.1875 0.92 2715 157 0.2078 0.2967 REMARK 3 10 2.1875 - 2.1121 0.93 2751 127 0.2085 0.2738 REMARK 3 11 2.1121 - 2.0460 0.93 2752 148 0.2183 0.2874 REMARK 3 12 2.0460 - 1.9876 0.94 2786 154 0.2217 0.2574 REMARK 3 13 1.9876 - 1.9352 0.93 2785 129 0.2383 0.2717 REMARK 3 14 1.9352 - 1.8880 0.88 2598 138 0.2929 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4090 REMARK 3 ANGLE : 1.162 5542 REMARK 3 CHIRALITY : 0.048 611 REMARK 3 PLANARITY : 0.005 717 REMARK 3 DIHEDRAL : 14.918 1542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8943 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39652 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.888 REMARK 200 RESOLUTION RANGE LOW (A) : 37.361 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 61.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1E67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 1 REMARK 465 GLU C 2 REMARK 465 CYS C 3 REMARK 465 THR D 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 342 O HOH C 347 2.05 REMARK 500 O HOH A 306 O HOH A 341 2.07 REMARK 500 O HOH A 389 O HOH A 395 2.11 REMARK 500 O HOH A 378 O HOH A 379 2.11 REMARK 500 O HOH A 377 O HOH A 388 2.11 REMARK 500 O HIS C 83 O HOH C 301 2.12 REMARK 500 O SER D 94 O HOH D 301 2.15 REMARK 500 O HOH B 306 O HOH B 381 2.15 REMARK 500 O HOH A 403 O HOH A 407 2.15 REMARK 500 O HOH A 352 O HOH C 332 2.16 REMARK 500 O HOH B 376 O HOH B 393 2.16 REMARK 500 O HOH A 393 O HOH B 362 2.17 REMARK 500 O HOH D 323 O HOH D 346 2.17 REMARK 500 OG1 THR A 21 NZ LYS A 128 2.17 REMARK 500 O HOH B 328 O HOH B 375 2.17 REMARK 500 O LEU A 102 O HOH A 301 2.18 REMARK 500 O HOH B 304 O HOH B 315 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 397 O HOH C 356 4748 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -167.89 -108.10 REMARK 500 ASN B 10 -168.38 -115.47 REMARK 500 MET C 44 39.89 -148.31 REMARK 500 GLU C 104 126.10 -36.89 REMARK 500 SER D 100 -37.01 -39.58 REMARK 500 LYS D 103 89.76 -153.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 45 O REMARK 620 2 HIS A 46 ND1 86.3 REMARK 620 3 CYS A 112 SG 102.3 133.7 REMARK 620 4 HIS A 117 ND1 96.0 103.0 120.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 45 O REMARK 620 2 HIS B 46 ND1 86.9 REMARK 620 3 CYS B 112 SG 101.6 135.7 REMARK 620 4 HIS B 117 ND1 93.4 110.8 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 45 O REMARK 620 2 HIS C 46 ND1 85.3 REMARK 620 3 CYS C 112 SG 99.4 126.7 REMARK 620 4 HIS C 117 ND1 93.0 109.4 123.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 45 O REMARK 620 2 HIS D 46 ND1 95.3 REMARK 620 3 CYS D 112 SG 103.7 125.6 REMARK 620 4 HIS D 117 ND1 91.0 107.1 122.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE B 29 and R1A B REMARK 800 30 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide R1A B 30 and VAL B REMARK 800 31 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE C 29 and R1A C REMARK 800 30 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide R1A C 30 and VAL C REMARK 800 31 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE D 29 and R1A D REMARK 800 30 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide R1A D 30 and VAL D REMARK 800 31 DBREF 5I26 A 1 128 UNP P00282 AZUR_PSEAE 21 148 DBREF 5I26 B 1 128 UNP P00282 AZUR_PSEAE 21 148 DBREF 5I26 C 1 128 UNP P00282 AZUR_PSEAE 21 148 DBREF 5I26 D 1 128 UNP P00282 AZUR_PSEAE 21 148 SEQADV 5I26 R1A A 30 UNP P00282 THR 50 ENGINEERED MUTATION SEQADV 5I26 R1A B 30 UNP P00282 THR 50 ENGINEERED MUTATION SEQADV 5I26 R1A C 30 UNP P00282 THR 50 ENGINEERED MUTATION SEQADV 5I26 R1A D 30 UNP P00282 THR 50 ENGINEERED MUTATION SEQRES 1 A 128 ALA GLU CYS SER VAL ASP ILE GLN GLY ASN ASP GLN MET SEQRES 2 A 128 GLN PHE ASN THR ASN ALA ILE THR VAL ASP LYS SER CYS SEQRES 3 A 128 LYS GLN PHE R1A VAL ASN LEU SER HIS PRO GLY ASN LEU SEQRES 4 A 128 PRO LYS ASN VAL MET GLY HIS ASN TRP VAL LEU SER THR SEQRES 5 A 128 ALA ALA ASP MET GLN GLY VAL VAL THR ASP GLY MET ALA SEQRES 6 A 128 SER GLY LEU ASP LYS ASP TYR LEU LYS PRO ASP ASP SER SEQRES 7 A 128 ARG VAL ILE ALA HIS THR LYS LEU ILE GLY SER GLY GLU SEQRES 8 A 128 LYS ASP SER VAL THR PHE ASP VAL SER LYS LEU LYS GLU SEQRES 9 A 128 GLY GLU GLN TYR MET PHE PHE CYS THR PHE PRO GLY HIS SEQRES 10 A 128 SER ALA LEU MET LYS GLY THR LEU THR LEU LYS SEQRES 1 B 128 ALA GLU CYS SER VAL ASP ILE GLN GLY ASN ASP GLN MET SEQRES 2 B 128 GLN PHE ASN THR ASN ALA ILE THR VAL ASP LYS SER CYS SEQRES 3 B 128 LYS GLN PHE R1A VAL ASN LEU SER HIS PRO GLY ASN LEU SEQRES 4 B 128 PRO LYS ASN VAL MET GLY HIS ASN TRP VAL LEU SER THR SEQRES 5 B 128 ALA ALA ASP MET GLN GLY VAL VAL THR ASP GLY MET ALA SEQRES 6 B 128 SER GLY LEU ASP LYS ASP TYR LEU LYS PRO ASP ASP SER SEQRES 7 B 128 ARG VAL ILE ALA HIS THR LYS LEU ILE GLY SER GLY GLU SEQRES 8 B 128 LYS ASP SER VAL THR PHE ASP VAL SER LYS LEU LYS GLU SEQRES 9 B 128 GLY GLU GLN TYR MET PHE PHE CYS THR PHE PRO GLY HIS SEQRES 10 B 128 SER ALA LEU MET LYS GLY THR LEU THR LEU LYS SEQRES 1 C 128 ALA GLU CYS SER VAL ASP ILE GLN GLY ASN ASP GLN MET SEQRES 2 C 128 GLN PHE ASN THR ASN ALA ILE THR VAL ASP LYS SER CYS SEQRES 3 C 128 LYS GLN PHE R1A VAL ASN LEU SER HIS PRO GLY ASN LEU SEQRES 4 C 128 PRO LYS ASN VAL MET GLY HIS ASN TRP VAL LEU SER THR SEQRES 5 C 128 ALA ALA ASP MET GLN GLY VAL VAL THR ASP GLY MET ALA SEQRES 6 C 128 SER GLY LEU ASP LYS ASP TYR LEU LYS PRO ASP ASP SER SEQRES 7 C 128 ARG VAL ILE ALA HIS THR LYS LEU ILE GLY SER GLY GLU SEQRES 8 C 128 LYS ASP SER VAL THR PHE ASP VAL SER LYS LEU LYS GLU SEQRES 9 C 128 GLY GLU GLN TYR MET PHE PHE CYS THR PHE PRO GLY HIS SEQRES 10 C 128 SER ALA LEU MET LYS GLY THR LEU THR LEU LYS SEQRES 1 D 128 ALA GLU CYS SER VAL ASP ILE GLN GLY ASN ASP GLN MET SEQRES 2 D 128 GLN PHE ASN THR ASN ALA ILE THR VAL ASP LYS SER CYS SEQRES 3 D 128 LYS GLN PHE R1A VAL ASN LEU SER HIS PRO GLY ASN LEU SEQRES 4 D 128 PRO LYS ASN VAL MET GLY HIS ASN TRP VAL LEU SER THR SEQRES 5 D 128 ALA ALA ASP MET GLN GLY VAL VAL THR ASP GLY MET ALA SEQRES 6 D 128 SER GLY LEU ASP LYS ASP TYR LEU LYS PRO ASP ASP SER SEQRES 7 D 128 ARG VAL ILE ALA HIS THR LYS LEU ILE GLY SER GLY GLU SEQRES 8 D 128 LYS ASP SER VAL THR PHE ASP VAL SER LYS LEU LYS GLU SEQRES 9 D 128 GLY GLU GLN TYR MET PHE PHE CYS THR PHE PRO GLY HIS SEQRES 10 D 128 SER ALA LEU MET LYS GLY THR LEU THR LEU LYS HET R1A A 30 18 HET R1A B 30 18 HET R1A C 30 18 HET R1A D 30 18 HET CU A 201 1 HET CU B 201 1 HET CU C 201 1 HET CU D 201 1 HETNAM R1A 3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H- HETNAM 2 R1A PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE HETNAM CU COPPER (II) ION HETSYN R1A S-(THIOMETHYL-3-[2,2,5,5-TETRAMETHYL PYRROLINE-1-OXYL]) HETSYN 2 R1A CYSTEINE FORMUL 1 R1A 4(C12 H21 N2 O3 S2 1+) FORMUL 5 CU 4(CU 2+) FORMUL 9 HOH *307(H2 O) HELIX 1 AA1 PRO A 40 GLY A 45 1 6 HELIX 2 AA2 ASP A 55 ALA A 65 1 11 HELIX 3 AA3 SER A 66 ASP A 71 5 6 HELIX 4 AA4 SER A 100 LEU A 102 5 3 HELIX 5 AA5 GLY A 116 LEU A 120 5 5 HELIX 6 AA6 PRO B 40 GLY B 45 1 6 HELIX 7 AA7 ASP B 55 ALA B 65 1 11 HELIX 8 AA8 SER B 66 ASP B 71 5 6 HELIX 9 AA9 SER B 100 LEU B 102 5 3 HELIX 10 AB1 GLY B 116 LEU B 120 5 5 HELIX 11 AB2 PRO C 40 GLY C 45 1 6 HELIX 12 AB3 ASP C 55 GLY C 67 1 13 HELIX 13 AB4 LEU C 68 ASP C 71 5 4 HELIX 14 AB5 SER C 100 LEU C 102 5 3 HELIX 15 AB6 GLY C 116 LEU C 120 5 5 HELIX 16 AB7 PRO D 40 GLY D 45 1 6 HELIX 17 AB8 ASP D 55 GLY D 67 1 13 HELIX 18 AB9 SER D 100 LEU D 102 5 3 HELIX 19 AC1 GLY D 116 LEU D 120 5 5 SHEET 1 AA1 3 SER A 4 GLN A 8 0 SHEET 2 AA1 3 GLN A 28 SER A 34 1 O ASN A 32 N VAL A 5 SHEET 3 AA1 3 LYS A 92 ASP A 98 -1 O VAL A 95 N VAL A 31 SHEET 1 AA2 5 ALA A 19 ASP A 23 0 SHEET 2 AA2 5 LYS A 122 LYS A 128 1 O THR A 126 N VAL A 22 SHEET 3 AA2 5 TYR A 108 PHE A 111 -1 N PHE A 110 O GLY A 123 SHEET 4 AA2 5 VAL A 49 THR A 52 -1 N SER A 51 O MET A 109 SHEET 5 AA2 5 ALA A 82 HIS A 83 -1 O ALA A 82 N LEU A 50 SHEET 1 AA3 3 SER B 4 GLN B 8 0 SHEET 2 AA3 3 GLN B 28 SER B 34 1 O ASN B 32 N VAL B 5 SHEET 3 AA3 3 LYS B 92 ASP B 98 -1 O ASP B 93 N LEU B 33 SHEET 1 AA4 5 ALA B 19 ASP B 23 0 SHEET 2 AA4 5 LYS B 122 LYS B 128 1 O THR B 126 N VAL B 22 SHEET 3 AA4 5 TYR B 108 PHE B 111 -1 N TYR B 108 O LEU B 125 SHEET 4 AA4 5 VAL B 49 THR B 52 -1 N SER B 51 O MET B 109 SHEET 5 AA4 5 ALA B 82 HIS B 83 -1 O ALA B 82 N LEU B 50 SHEET 1 AA5 3 VAL C 5 GLN C 8 0 SHEET 2 AA5 3 GLN C 28 SER C 34 1 O ASN C 32 N VAL C 5 SHEET 3 AA5 3 LYS C 92 ASP C 98 -1 O ASP C 93 N LEU C 33 SHEET 1 AA6 5 ALA C 19 ASP C 23 0 SHEET 2 AA6 5 LYS C 122 LYS C 128 1 O LYS C 128 N VAL C 22 SHEET 3 AA6 5 TYR C 108 PHE C 111 -1 N PHE C 110 O GLY C 123 SHEET 4 AA6 5 VAL C 49 THR C 52 -1 N SER C 51 O MET C 109 SHEET 5 AA6 5 ALA C 82 HIS C 83 -1 O ALA C 82 N LEU C 50 SHEET 1 AA7 3 SER D 4 GLN D 8 0 SHEET 2 AA7 3 GLN D 28 SER D 34 1 O SER D 34 N ILE D 7 SHEET 3 AA7 3 LYS D 92 ASP D 98 -1 O ASP D 93 N LEU D 33 SHEET 1 AA8 5 ALA D 19 ILE D 20 0 SHEET 2 AA8 5 LYS D 122 LEU D 125 1 O THR D 124 N ILE D 20 SHEET 3 AA8 5 TYR D 108 PHE D 111 -1 N TYR D 108 O LEU D 125 SHEET 4 AA8 5 VAL D 49 THR D 52 -1 N SER D 51 O MET D 109 SHEET 5 AA8 5 ALA D 82 HIS D 83 -1 O ALA D 82 N LEU D 50 SSBOND 1 CYS A 3 CYS A 26 1555 1555 2.03 SSBOND 2 CYS B 3 CYS B 26 1555 1555 2.08 SSBOND 3 CYS D 3 CYS D 26 1555 1555 2.03 LINK C PHE A 29 N R1A A 30 1555 1555 1.33 LINK C R1A A 30 N VAL A 31 1555 1555 1.33 LINK C PHE B 29 N R1A B 30 1555 1555 1.32 LINK C R1A B 30 N VAL B 31 1555 1555 1.33 LINK C PHE C 29 N R1A C 30 1555 1555 1.33 LINK C R1A C 30 N VAL C 31 1555 1555 1.33 LINK C PHE D 29 N R1A D 30 1555 1555 1.32 LINK C R1A D 30 N VAL D 31 1555 1555 1.33 LINK O GLY A 45 CU CU A 201 1555 1555 2.41 LINK ND1 HIS A 46 CU CU A 201 1555 1555 2.09 LINK SG CYS A 112 CU CU A 201 1555 1555 2.27 LINK ND1 HIS A 117 CU CU A 201 1555 1555 2.10 LINK O GLY B 45 CU CU B 201 1555 1555 2.21 LINK ND1 HIS B 46 CU CU B 201 1555 1555 1.90 LINK SG CYS B 112 CU CU B 201 1555 1555 2.37 LINK ND1 HIS B 117 CU CU B 201 1555 1555 2.08 LINK O GLY C 45 CU CU C 201 1555 1555 2.37 LINK ND1 HIS C 46 CU CU C 201 1555 1555 2.09 LINK SG CYS C 112 CU CU C 201 1555 1555 2.19 LINK ND1 HIS C 117 CU CU C 201 1555 1555 1.96 LINK O GLY D 45 CU CU D 201 1555 1555 2.21 LINK ND1 HIS D 46 CU CU D 201 1555 1555 2.29 LINK SG CYS D 112 CU CU D 201 1555 1555 2.27 LINK ND1 HIS D 117 CU CU D 201 1555 1555 2.09 SITE 1 AC1 5 GLY A 45 HIS A 46 CYS A 112 HIS A 117 SITE 2 AC1 5 MET A 121 SITE 1 AC2 5 GLY B 45 HIS B 46 CYS B 112 HIS B 117 SITE 2 AC2 5 MET B 121 SITE 1 AC3 6 GLY C 45 HIS C 46 CYS C 112 PHE C 114 SITE 2 AC3 6 HIS C 117 MET C 121 SITE 1 AC4 5 GLY D 45 HIS D 46 CYS D 112 HIS D 117 SITE 2 AC4 5 MET D 121 SITE 1 AC5 12 CYS B 3 SER B 4 VAL B 5 GLN B 28 SITE 2 AC5 12 VAL B 31 ASN B 32 VAL B 95 THR B 96 SITE 3 AC5 12 PHE B 97 SER C 34 LYS C 92 HOH C 313 SITE 1 AC6 12 CYS B 3 SER B 4 VAL B 5 ILE B 7 SITE 2 AC6 12 PHE B 29 ASN B 32 SER B 94 VAL B 95 SITE 3 AC6 12 THR B 96 SER C 34 LYS C 92 HOH C 313 SITE 1 AC7 16 GLN B 28 THR B 96 PHE B 97 ASP B 98 SITE 2 AC7 16 HOH B 377 SER C 4 VAL C 5 ILE C 20 SITE 3 AC7 16 THR C 21 GLN C 28 VAL C 31 ASN C 32 SITE 4 AC7 16 SER C 94 VAL C 95 THR C 96 PHE C 97 SITE 1 AC8 15 GLN B 28 THR B 96 PHE B 97 ASP B 98 SITE 2 AC8 15 HOH B 377 VAL C 5 ILE C 7 PHE C 29 SITE 3 AC8 15 ASN C 32 LEU C 33 TRP C 48 ASP C 93 SITE 4 AC8 15 SER C 94 VAL C 95 THR C 96 SITE 1 AC9 12 CYS D 3 SER D 4 VAL D 5 VAL D 22 SITE 2 AC9 12 LYS D 27 GLN D 28 VAL D 31 ASN D 32 SITE 3 AC9 12 SER D 94 VAL D 95 THR D 96 PHE D 97 SITE 1 AD1 11 CYS D 3 SER D 4 VAL D 5 ILE D 7 SITE 2 AD1 11 LYS D 27 PHE D 29 ASN D 32 TRP D 48 SITE 3 AD1 11 SER D 94 VAL D 95 THR D 96 CRYST1 86.560 68.750 93.440 90.00 96.75 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011553 0.000000 0.001367 0.00000 SCALE2 0.000000 0.014545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010777 0.00000