HEADER BIOSYNTHETIC PROTEIN 09-FEB-16 5I2T TITLE DOMAIN CHARACTERIZATION OF THE WD PROTEIN PWP2 AND THEIR RELEVANCE IN TITLE 2 RIBOSOME BIOGENESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIODIC TRYPTOPHAN PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: U THREE PROTEIN 1,U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN COMPND 5 1,U3 SNORNA-ASSOCIATED PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PWP2, UTP1, YCR057C, YCR55C/YCR57C/YCR58C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSOME BIOGENESIS, WD, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FRIBOURG,F.BOISSIER REVDAT 3 10-JAN-24 5I2T 1 REMARK REVDAT 2 16-OCT-19 5I2T 1 REMARK REVDAT 1 21-JUN-17 5I2T 0 JRNL AUTH F.BOISSIER,C.M.SCHMIDT,J.LINNEMANN,S.FRIBOURG, JRNL AUTH 2 J.PEREZ-FERNANDEZ JRNL TITL PWP2 MEDIATES UTP-B ASSEMBLY VIA TWO STRUCTURALLY JRNL TITL 2 INDEPENDENT DOMAINS. JRNL REF SCI REP V. 7 3169 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28600509 JRNL DOI 10.1038/S41598-017-03034-Y REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4059 - 5.8185 1.00 2933 155 0.1836 0.2362 REMARK 3 2 5.8185 - 4.6196 1.00 2816 148 0.1565 0.1930 REMARK 3 3 4.6196 - 4.0360 1.00 2769 146 0.1521 0.1813 REMARK 3 4 4.0360 - 3.6671 1.00 2763 146 0.1935 0.2392 REMARK 3 5 3.6671 - 3.4044 1.00 2744 144 0.2173 0.2320 REMARK 3 6 3.4044 - 3.2037 1.00 2734 144 0.2394 0.3071 REMARK 3 7 3.2037 - 3.0433 1.00 2719 143 0.2759 0.3389 REMARK 3 8 3.0433 - 2.9108 1.00 2738 144 0.3243 0.3397 REMARK 3 9 2.9108 - 2.7988 1.00 2701 142 0.3202 0.3524 REMARK 3 10 2.7988 - 2.7022 1.00 2719 143 0.3503 0.3630 REMARK 3 11 2.7022 - 2.6177 1.00 2681 141 0.3883 0.4019 REMARK 3 12 2.6177 - 2.5429 0.97 2617 138 0.4222 0.4299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4903 REMARK 3 ANGLE : 1.374 6640 REMARK 3 CHIRALITY : 0.078 738 REMARK 3 PLANARITY : 0.007 850 REMARK 3 DIHEDRAL : 16.586 1728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000214128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 47.398 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.740 REMARK 200 R MERGE (I) : 0.01870 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 2PBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 % POLYETHYLENE GLYCOL 6000, 0.1 M REMARK 280 MAGNESIUM SULPHATE, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 SER A 3 REMARK 465 LYS A 222 REMARK 465 ARG A 223 REMARK 465 PRO A 224 REMARK 465 SER A 225 REMARK 465 ASP A 226 REMARK 465 ASP A 227 REMARK 465 ASP A 228 REMARK 465 ASP A 229 REMARK 465 ASN A 230 REMARK 465 GLU A 231 REMARK 465 SER A 232 REMARK 465 GLU A 233 REMARK 465 ASP A 234 REMARK 465 ASP A 235 REMARK 465 ASP A 236 REMARK 465 LYS A 237 REMARK 465 GLN A 238 REMARK 465 GLU A 239 REMARK 465 GLU A 240 REMARK 465 VAL A 241 REMARK 465 ASP A 242 REMARK 465 ILE A 243 REMARK 465 SER A 244 REMARK 465 LYS A 245 REMARK 465 TYR A 246 REMARK 465 SER A 561 REMARK 465 GLY A 562 REMARK 465 ARG A 563 REMARK 465 PHE A 564 REMARK 465 ASN A 565 REMARK 465 GLN A 566 REMARK 465 ASP A 567 REMARK 465 ARG A 568 REMARK 465 PHE A 569 REMARK 465 THR A 570 REMARK 465 ALA A 571 REMARK 465 LYS A 572 REMARK 465 ASN A 573 REMARK 465 SER A 574 REMARK 465 GLU A 575 REMARK 465 ARG A 576 REMARK 465 MET A 621 REMARK 465 ALA A 622 REMARK 465 LEU A 623 REMARK 465 ASN A 624 REMARK 465 GLY A 625 REMARK 465 THR A 626 REMARK 465 LEU A 627 REMARK 465 GLU A 628 REMARK 465 PHE A 629 REMARK 465 LEU A 630 REMARK 465 ASN A 631 REMARK 465 SER A 632 REMARK 465 LYS A 633 REMARK 465 LYS A 634 REMARK 465 MET A 635 REMARK 465 THR A 636 REMARK 465 GLU A 637 REMARK 465 ALA A 638 REMARK 465 GLY A 639 REMARK 465 SER A 640 REMARK 465 LEU A 641 REMARK 465 ASP A 642 REMARK 465 LEU A 643 REMARK 465 ILE A 644 REMARK 465 ASP A 645 REMARK 465 ASP A 646 REMARK 465 ALA A 647 REMARK 465 GLY A 648 REMARK 465 GLU A 649 REMARK 465 ASN A 650 REMARK 465 SER A 651 REMARK 465 ASP A 652 REMARK 465 LEU A 653 REMARK 465 GLU A 654 REMARK 465 ASP A 655 REMARK 465 ARG A 656 REMARK 465 ILE A 657 REMARK 465 ASP A 658 REMARK 465 ASN A 659 REMARK 465 SER A 660 REMARK 465 LEU A 661 REMARK 465 PRO A 662 REMARK 465 GLY A 663 REMARK 465 SER A 664 REMARK 465 GLN A 665 REMARK 465 ARG A 666 REMARK 465 GLY A 667 REMARK 465 GLY A 668 REMARK 465 ASP A 669 REMARK 465 LEU A 670 REMARK 465 SER A 671 REMARK 465 THR A 672 REMARK 465 ARG A 673 REMARK 465 LYS A 674 REMARK 465 MET A 675 REMARK 465 ARG A 676 REMARK 465 PRO A 677 REMARK 465 ASP A 708 REMARK 465 THR A 709 REMARK 465 ILE A 710 REMARK 465 LEU A 711 REMARK 465 PHE A 712 REMARK 465 ASP A 713 REMARK 465 PRO A 714 REMARK 465 PHE A 715 REMARK 465 ASP A 716 REMARK 465 LEU A 717 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 ASP A 130 CG OD1 OD2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 467 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 25 O HOH A 901 1.82 REMARK 500 NH2 ARG A 524 OD2 ASP A 526 1.88 REMARK 500 O HOH A 913 O HOH A 938 1.90 REMARK 500 O HOH A 925 O HOH A 941 2.00 REMARK 500 O HOH A 935 O HOH A 942 2.05 REMARK 500 OH TYR A 419 O HOH A 902 2.09 REMARK 500 O HOH A 912 O HOH A 929 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 78 OE2 GLU A 510 3746 2.08 REMARK 500 O HOH A 926 O HOH A 934 4456 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 511 C - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 556 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -62.55 -108.68 REMARK 500 ALA A 60 140.14 -171.17 REMARK 500 ALA A 101 140.07 -170.48 REMARK 500 ARG A 131 49.31 -147.68 REMARK 500 GLU A 335 28.97 47.07 REMARK 500 PHE A 345 43.39 -141.65 REMARK 500 ASN A 349 -60.61 -99.29 REMARK 500 GLU A 384 26.42 -142.31 REMARK 500 GLU A 473 12.26 54.81 REMARK 500 GLU A 484 104.54 -59.86 REMARK 500 SER A 486 47.23 -147.52 REMARK 500 ASP A 494 2.71 -64.54 REMARK 500 GLN A 508 97.56 -167.65 REMARK 500 LYS A 557 16.89 -148.54 REMARK 500 ILE A 559 98.41 -66.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 515 SER A 516 -90.89 REMARK 500 SER A 516 ASP A 517 66.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 801 DBREF 5I2T A 1 717 UNP P25635 PWP2_YEAST 1 717 SEQADV 5I2T MET A -24 UNP P25635 INITIATING METHIONINE SEQADV 5I2T GLY A -23 UNP P25635 EXPRESSION TAG SEQADV 5I2T SER A -22 UNP P25635 EXPRESSION TAG SEQADV 5I2T SER A -21 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A -20 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A -19 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A -18 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A -17 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A -16 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A -15 UNP P25635 EXPRESSION TAG SEQADV 5I2T SER A -14 UNP P25635 EXPRESSION TAG SEQADV 5I2T SER A -13 UNP P25635 EXPRESSION TAG SEQADV 5I2T GLY A -12 UNP P25635 EXPRESSION TAG SEQADV 5I2T THR A -11 UNP P25635 EXPRESSION TAG SEQADV 5I2T GLY A -10 UNP P25635 EXPRESSION TAG SEQADV 5I2T SER A -9 UNP P25635 EXPRESSION TAG SEQADV 5I2T GLY A -8 UNP P25635 EXPRESSION TAG SEQADV 5I2T GLU A -7 UNP P25635 EXPRESSION TAG SEQADV 5I2T ASN A -6 UNP P25635 EXPRESSION TAG SEQADV 5I2T LEU A -5 UNP P25635 EXPRESSION TAG SEQADV 5I2T TYR A -4 UNP P25635 EXPRESSION TAG SEQADV 5I2T PHE A -3 UNP P25635 EXPRESSION TAG SEQADV 5I2T GLN A -2 UNP P25635 EXPRESSION TAG SEQADV 5I2T GLY A -1 UNP P25635 EXPRESSION TAG SEQADV 5I2T HIS A 0 UNP P25635 EXPRESSION TAG SEQRES 1 A 742 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 742 THR GLY SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 A 742 LYS SER ASP PHE LYS PHE SER ASN LEU LEU GLY THR VAL SEQRES 4 A 742 TYR ARG GLN GLY ASN ILE THR PHE SER ASP ASP GLY LYS SEQRES 5 A 742 GLN LEU LEU SER PRO VAL GLY ASN ARG VAL SER VAL PHE SEQRES 6 A 742 ASP LEU ILE ASN ASN LYS SER PHE THR PHE GLU TYR GLU SEQRES 7 A 742 HIS ARG LYS ASN ILE ALA ALA ILE ASP LEU ASN LYS GLN SEQRES 8 A 742 GLY THR LEU LEU ILE SER ILE ASP GLU ASP GLY ARG ALA SEQRES 9 A 742 ILE LEU VAL ASN PHE LYS ALA ARG ASN VAL LEU HIS HIS SEQRES 10 A 742 PHE ASN PHE LYS GLU LYS CYS SER ALA VAL LYS PHE SER SEQRES 11 A 742 PRO ASP GLY ARG LEU PHE ALA LEU ALA SER GLY ARG PHE SEQRES 12 A 742 LEU GLN ILE TRP LYS THR PRO ASP VAL ASN LYS ASP ARG SEQRES 13 A 742 GLN PHE ALA PRO PHE VAL ARG HIS ARG VAL HIS ALA GLY SEQRES 14 A 742 HIS PHE GLN ASP ILE THR SER LEU THR TRP SER GLN ASP SEQRES 15 A 742 SER ARG PHE ILE LEU THR THR SER LYS ASP LEU SER ALA SEQRES 16 A 742 LYS ILE TRP SER VAL ASP SER GLU GLU LYS ASN LEU ALA SEQRES 17 A 742 ALA THR THR PHE ASN GLY HIS ARG ASP TYR VAL MET GLY SEQRES 18 A 742 ALA PHE PHE SER HIS ASP GLN GLU LYS ILE TYR THR VAL SEQRES 19 A 742 SER LYS ASP GLY ALA VAL PHE VAL TRP GLU PHE THR LYS SEQRES 20 A 742 ARG PRO SER ASP ASP ASP ASP ASN GLU SER GLU ASP ASP SEQRES 21 A 742 ASP LYS GLN GLU GLU VAL ASP ILE SER LYS TYR SER TRP SEQRES 22 A 742 ARG ILE THR LYS LYS HIS PHE PHE TYR ALA ASN GLN ALA SEQRES 23 A 742 LYS VAL LYS CYS VAL THR PHE HIS PRO ALA THR ARG LEU SEQRES 24 A 742 LEU ALA VAL GLY PHE THR SER GLY GLU PHE ARG LEU TYR SEQRES 25 A 742 ASP LEU PRO ASP PHE THR LEU ILE GLN GLN LEU SER MET SEQRES 26 A 742 GLY GLN ASN PRO VAL ASN THR VAL SER VAL ASN GLN THR SEQRES 27 A 742 GLY GLU TRP LEU ALA PHE GLY SER SER LYS LEU GLY GLN SEQRES 28 A 742 LEU LEU VAL TYR GLU TRP GLN SER GLU SER TYR ILE LEU SEQRES 29 A 742 LYS GLN GLN GLY HIS PHE ASP SER THR ASN SER LEU ALA SEQRES 30 A 742 TYR SER PRO ASP GLY SER ARG VAL VAL THR ALA SER GLU SEQRES 31 A 742 ASP GLY LYS ILE LYS VAL TRP ASP ILE THR SER GLY PHE SEQRES 32 A 742 CYS LEU ALA THR PHE GLU GLU HIS THR SER SER VAL THR SEQRES 33 A 742 ALA VAL GLN PHE ALA LYS ARG GLY GLN VAL MET PHE SER SEQRES 34 A 742 SER SER LEU ASP GLY THR VAL ARG ALA TRP ASP LEU ILE SEQRES 35 A 742 ARG TYR ARG ASN PHE ARG THR PHE THR GLY THR GLU ARG SEQRES 36 A 742 ILE GLN PHE ASN CYS LEU ALA VAL ASP PRO SER GLY GLU SEQRES 37 A 742 VAL VAL CYS ALA GLY SER LEU ASP ASN PHE ASP ILE HIS SEQRES 38 A 742 VAL TRP SER VAL GLN THR GLY GLN LEU LEU ASP ALA LEU SEQRES 39 A 742 SER GLY HIS GLU GLY PRO VAL SER CYS LEU SER PHE SER SEQRES 40 A 742 GLN GLU ASN SER VAL LEU ALA SER ALA SER TRP ASP LYS SEQRES 41 A 742 THR ILE ARG ILE TRP SER ILE PHE GLY ARG SER GLN GLN SEQRES 42 A 742 VAL GLU PRO ILE GLU VAL TYR SER ASP VAL LEU ALA LEU SEQRES 43 A 742 SER MET ARG PRO ASP GLY LYS GLU VAL ALA VAL SER THR SEQRES 44 A 742 LEU LYS GLY GLN ILE SER ILE PHE ASN ILE GLU ASP ALA SEQRES 45 A 742 LYS GLN VAL GLY ASN ILE ASP CYS ARG LYS ASP ILE ILE SEQRES 46 A 742 SER GLY ARG PHE ASN GLN ASP ARG PHE THR ALA LYS ASN SEQRES 47 A 742 SER GLU ARG SER LYS PHE PHE THR THR ILE HIS TYR SER SEQRES 48 A 742 PHE ASP GLY MET ALA ILE VAL ALA GLY GLY ASN ASN ASN SEQRES 49 A 742 SER ILE CYS LEU TYR ASP VAL PRO ASN GLU VAL LEU LEU SEQRES 50 A 742 LYS ARG PHE ILE VAL SER ARG ASN MET ALA LEU ASN GLY SEQRES 51 A 742 THR LEU GLU PHE LEU ASN SER LYS LYS MET THR GLU ALA SEQRES 52 A 742 GLY SER LEU ASP LEU ILE ASP ASP ALA GLY GLU ASN SER SEQRES 53 A 742 ASP LEU GLU ASP ARG ILE ASP ASN SER LEU PRO GLY SER SEQRES 54 A 742 GLN ARG GLY GLY ASP LEU SER THR ARG LYS MET ARG PRO SEQRES 55 A 742 GLU VAL ARG VAL THR SER VAL GLN PHE SER PRO THR ALA SEQRES 56 A 742 ASN ALA PHE ALA ALA ALA SER THR GLU GLY LEU LEU ILE SEQRES 57 A 742 TYR SER THR ASN ASP THR ILE LEU PHE ASP PRO PHE ASP SEQRES 58 A 742 LEU HET SO4 A 801 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *44(H2 O) SHEET 1 AA1 4 LYS A 6 LEU A 11 0 SHEET 2 AA1 4 GLY A 700 SER A 705 -1 O SER A 705 N LYS A 6 SHEET 3 AA1 4 ALA A 692 SER A 697 -1 N ALA A 695 O LEU A 702 SHEET 4 AA1 4 VAL A 681 PHE A 686 -1 N SER A 683 O ALA A 696 SHEET 1 AA2 4 THR A 21 PHE A 22 0 SHEET 2 AA2 4 GLN A 28 PRO A 32 -1 O LEU A 30 N THR A 21 SHEET 3 AA2 4 VAL A 37 ASP A 41 -1 O PHE A 40 N LEU A 29 SHEET 4 AA2 4 LYS A 46 THR A 49 -1 O LYS A 46 N ASP A 41 SHEET 1 AA3 4 ILE A 58 LEU A 63 0 SHEET 2 AA3 4 LEU A 69 ASP A 74 -1 O ILE A 73 N ALA A 59 SHEET 3 AA3 4 ARG A 78 ASN A 83 -1 O VAL A 82 N LEU A 70 SHEET 4 AA3 4 VAL A 89 ASN A 94 -1 O LEU A 90 N LEU A 81 SHEET 1 AA4 4 CYS A 99 PHE A 104 0 SHEET 2 AA4 4 LEU A 110 SER A 115 -1 O ALA A 112 N LYS A 103 SHEET 3 AA4 4 PHE A 118 LYS A 123 -1 O TRP A 122 N PHE A 111 SHEET 4 AA4 4 VAL A 137 HIS A 142 -1 O HIS A 139 N ILE A 121 SHEET 1 AA5 4 ILE A 149 TRP A 154 0 SHEET 2 AA5 4 PHE A 160 SER A 165 -1 O THR A 164 N THR A 150 SHEET 3 AA5 4 ALA A 170 SER A 174 -1 O TRP A 173 N ILE A 161 SHEET 4 AA5 4 THR A 185 PHE A 187 -1 O PHE A 187 N ALA A 170 SHEET 1 AA6 4 VAL A 194 PHE A 199 0 SHEET 2 AA6 4 LYS A 205 SER A 210 -1 O TYR A 207 N PHE A 198 SHEET 3 AA6 4 ALA A 214 GLU A 219 -1 O PHE A 216 N THR A 208 SHEET 4 AA6 4 ARG A 249 PHE A 255 -1 O THR A 251 N VAL A 217 SHEET 1 AA7 4 VAL A 263 HIS A 269 0 SHEET 2 AA7 4 LEU A 274 PHE A 279 -1 O LEU A 274 N HIS A 269 SHEET 3 AA7 4 GLU A 283 ASP A 288 -1 O GLU A 283 N PHE A 279 SHEET 4 AA7 4 THR A 293 SER A 299 -1 O LEU A 298 N PHE A 284 SHEET 1 AA8 4 THR A 307 VAL A 310 0 SHEET 2 AA8 4 TRP A 316 SER A 321 -1 O ALA A 318 N SER A 309 SHEET 3 AA8 4 GLN A 326 GLU A 331 -1 O TYR A 330 N LEU A 317 SHEET 4 AA8 4 SER A 336 GLN A 341 -1 O SER A 336 N GLU A 331 SHEET 1 AA9 4 THR A 348 TYR A 353 0 SHEET 2 AA9 4 ARG A 359 SER A 364 -1 O ALA A 363 N ASN A 349 SHEET 3 AA9 4 ILE A 369 ASP A 373 -1 O TRP A 372 N VAL A 360 SHEET 4 AA9 4 CYS A 379 PHE A 383 -1 O ALA A 381 N VAL A 371 SHEET 1 AB1 4 VAL A 390 ALA A 396 0 SHEET 2 AB1 4 VAL A 401 SER A 406 -1 O PHE A 403 N GLN A 394 SHEET 3 AB1 4 VAL A 411 ASP A 415 -1 O ARG A 412 N SER A 404 SHEET 4 AB1 4 THR A 424 PHE A 425 -1 O PHE A 425 N VAL A 411 SHEET 1 AB2 3 CYS A 435 VAL A 438 0 SHEET 2 AB2 3 VAL A 444 GLY A 448 -1 O CYS A 446 N ALA A 437 SHEET 3 AB2 3 ILE A 455 SER A 459 -1 O HIS A 456 N ALA A 447 SHEET 1 AB3 4 VAL A 476 PHE A 481 0 SHEET 2 AB3 4 LEU A 488 SER A 492 -1 O ALA A 491 N SER A 477 SHEET 3 AB3 4 THR A 496 TRP A 500 -1 O TRP A 500 N LEU A 488 SHEET 4 AB3 4 ILE A 512 GLU A 513 -1 O ILE A 512 N ILE A 497 SHEET 1 AB4 4 VAL A 518 MET A 523 0 SHEET 2 AB4 4 GLU A 529 THR A 534 -1 O SER A 533 N LEU A 519 SHEET 3 AB4 4 GLN A 538 ASN A 543 -1 O PHE A 542 N VAL A 530 SHEET 4 AB4 4 LYS A 548 ASP A 554 -1 O GLY A 551 N ILE A 541 SHEET 1 AB5 4 THR A 582 TYR A 585 0 SHEET 2 AB5 4 ALA A 591 GLY A 595 -1 O GLY A 595 N THR A 582 SHEET 3 AB5 4 SER A 600 ASP A 605 -1 O TYR A 604 N ILE A 592 SHEET 4 AB5 4 VAL A 610 ILE A 616 -1 O LEU A 612 N LEU A 603 CISPEP 1 GLU A 178 GLU A 179 0 -7.09 CISPEP 2 ASN A 188 GLY A 189 0 -0.17 CISPEP 3 LEU A 289 PRO A 290 0 17.31 CISPEP 4 LEU A 324 GLY A 325 0 -23.18 CISPEP 5 LYS A 397 ARG A 398 0 5.27 CISPEP 6 ARG A 398 GLY A 399 0 0.38 CISPEP 7 ASP A 408 GLY A 409 0 -2.11 CISPEP 8 SER A 441 GLY A 442 0 -1.09 CISPEP 9 THR A 462 GLY A 463 0 -13.52 CISPEP 10 ASN A 485 SER A 486 0 -4.47 SITE 1 AC1 8 ARG A 117 PHE A 118 SER A 200 HIS A 201 SITE 2 AC1 8 ASP A 202 LYS A 205 ARG A 273 HOH A 906 CRYST1 70.830 76.040 191.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005226 0.00000