HEADER MEMBRANE PROTEIN 09-FEB-16 5I31 OBSLTE 11-OCT-17 5I31 5U73 TITLE CRYSTAL STRUCTURE OF HUMAN NIEMANN-PICK C1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIEMANN-PICK C1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 341-1246; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,J.WANG,G.BLOBEL REVDAT 3 11-OCT-17 5I31 1 OBSLTE JRNL REMARK REVDAT 2 03-AUG-16 5I31 1 JRNL REVDAT 1 29-JUN-16 5I31 0 JRNL AUTH X.LI,J.WANG,E.COUTAVAS,H.SHI,Q.HAO,G.BLOBEL JRNL TITL STRUCTURE OF HUMAN NIEMANN-PICK C1 PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 8212 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27307437 JRNL DOI 10.1073/PNAS.1607795113 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.640 REMARK 3 COMPLETENESS FOR RANGE (%) : 48.2 REMARK 3 NUMBER OF REFLECTIONS : 16806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.314 REMARK 3 R VALUE (WORKING SET) : 0.313 REMARK 3 FREE R VALUE : 0.344 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1515 - 6.0790 0.98 5441 297 0.3272 0.3489 REMARK 3 2 6.0790 - 4.8275 0.85 4705 204 0.3319 0.3576 REMARK 3 3 4.8275 - 4.2180 0.57 3134 166 0.2710 0.2995 REMARK 3 4 4.2180 - 3.8326 0.32 1796 94 0.2994 0.3574 REMARK 3 5 3.8326 - 3.5581 0.13 714 42 0.3243 0.3765 REMARK 3 6 3.5581 - 3.3484 0.04 205 8 0.3587 0.7248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6039 REMARK 3 ANGLE : 1.334 8232 REMARK 3 CHIRALITY : 0.066 960 REMARK 3 PLANARITY : 0.008 1036 REMARK 3 DIHEDRAL : 15.686 3506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 43.4097 62.1060 35.7561 REMARK 3 T TENSOR REMARK 3 T11: 0.2288 T22: 0.2593 REMARK 3 T33: 0.2303 T12: -0.0590 REMARK 3 T13: -0.0723 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.6971 L22: 1.5507 REMARK 3 L33: 0.4748 L12: 0.4232 REMARK 3 L13: -0.2848 L23: -0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0874 S12: -0.0496 S13: 0.0492 REMARK 3 S21: 0.2239 S22: -0.0834 S23: 0.4923 REMARK 3 S31: 0.1418 S32: -0.1815 S33: 0.0660 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22223 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.348 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH5.5, 0.1M NACL, REMARK 280 12% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 90.96850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 111.53550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 90.96850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 111.53550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 341 REMARK 465 MET A 642 REMARK 465 LYS A 643 REMARK 465 SER A 644 REMARK 465 CYS A 645 REMARK 465 ARG A 646 REMARK 465 ARG A 647 REMARK 465 LEU A 648 REMARK 465 LEU A 649 REMARK 465 VAL A 650 REMARK 465 ASP A 651 REMARK 465 SER A 652 REMARK 465 LYS A 653 REMARK 465 VAL A 654 REMARK 465 SER A 655 REMARK 465 LEU A 656 REMARK 465 GLY A 657 REMARK 465 LEU A 715 REMARK 465 GLN A 716 REMARK 465 GLY A 717 REMARK 465 GLU A 718 REMARK 465 THR A 719 REMARK 465 LEU A 720 REMARK 465 ASP A 721 REMARK 465 GLN A 722 REMARK 465 GLN A 723 REMARK 465 ASN A 793 REMARK 465 ARG A 794 REMARK 465 LEU A 795 REMARK 465 ASP A 796 REMARK 465 ILE A 797 REMARK 465 PHE A 798 REMARK 465 CYS A 799 REMARK 465 CYS A 800 REMARK 465 VAL A 801 REMARK 465 ARG A 802 REMARK 465 GLY A 803 REMARK 465 ALA A 804 REMARK 465 GLU A 805 REMARK 465 ASP A 806 REMARK 465 GLY A 807 REMARK 465 THR A 808 REMARK 465 SER A 809 REMARK 465 VAL A 810 REMARK 465 GLN A 811 REMARK 465 ALA A 812 REMARK 465 SER A 813 REMARK 465 GLU A 814 REMARK 465 SER A 815 REMARK 465 CYS A 816 REMARK 465 LEU A 817 REMARK 465 PHE A 818 REMARK 465 ARG A 819 REMARK 465 PHE A 820 REMARK 465 PHE A 821 REMARK 465 LYS A 822 REMARK 465 ASN A 823 REMARK 465 SER A 824 REMARK 465 TYR A 825 REMARK 465 SER A 826 REMARK 465 PRO A 827 REMARK 465 LEU A 853 REMARK 465 ASN A 854 REMARK 465 LYS A 855 REMARK 465 VAL A 856 REMARK 465 ASP A 857 REMARK 465 ILE A 858 REMARK 465 GLY A 859 REMARK 465 LEU A 860 REMARK 465 ASP A 861 REMARK 465 GLN A 862 REMARK 465 GLU A 895 REMARK 465 GLY A 896 REMARK 465 HIS A 897 REMARK 465 ASP A 898 REMARK 465 TYR A 899 REMARK 465 LEU A 982 REMARK 465 THR A 983 REMARK 465 PRO A 984 REMARK 465 GLU A 985 REMARK 465 GLY A 986 REMARK 465 LYS A 987 REMARK 465 GLN A 988 REMARK 465 ARG A 989 REMARK 465 PRO A 990 REMARK 465 GLN A 991 REMARK 465 GLY A 992 REMARK 465 GLY A 993 REMARK 465 ASP A 994 REMARK 465 PHE A 995 REMARK 465 MET A 996 REMARK 465 ARG A 997 REMARK 465 PHE A 998 REMARK 465 LEU A 999 REMARK 465 PRO A 1000 REMARK 465 MET A 1001 REMARK 465 PHE A 1002 REMARK 465 LEU A 1003 REMARK 465 SER A 1004 REMARK 465 ASP A 1005 REMARK 465 ASN A 1006 REMARK 465 PRO A 1007 REMARK 465 ASN A 1008 REMARK 465 PRO A 1009 REMARK 465 LYS A 1010 REMARK 465 CYS A 1011 REMARK 465 GLY A 1012 REMARK 465 LYS A 1013 REMARK 465 GLY A 1014 REMARK 465 GLY A 1015 REMARK 465 HIS A 1016 REMARK 465 ALA A 1017 REMARK 465 ALA A 1018 REMARK 465 TYR A 1019 REMARK 465 SER A 1020 REMARK 465 LYS A 1057 REMARK 465 ALA A 1058 REMARK 465 ARG A 1059 REMARK 465 LEU A 1060 REMARK 465 ILE A 1061 REMARK 465 ALA A 1062 REMARK 465 SER A 1063 REMARK 465 ASN A 1064 REMARK 465 VAL A 1065 REMARK 465 THR A 1066 REMARK 465 GLU A 1067 REMARK 465 THR A 1068 REMARK 465 MET A 1069 REMARK 465 GLY A 1070 REMARK 465 ILE A 1071 REMARK 465 ASN A 1072 REMARK 465 GLY A 1073 REMARK 465 SER A 1074 REMARK 465 ALA A 1075 REMARK 465 TYR A 1076 REMARK 465 THR A 1172 REMARK 465 ARG A 1173 REMARK 465 ALA A 1174 REMARK 465 PHE A 1175 REMARK 465 THR A 1176 REMARK 465 VAL A 1177 REMARK 465 SER A 1178 REMARK 465 MET A 1179 REMARK 465 GLY A 1209 REMARK 465 ILE A 1210 REMARK 465 VAL A 1211 REMARK 465 VAL A 1212 REMARK 465 LEU A 1213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 342 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 342 CZ3 CH2 REMARK 470 HIS A 641 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 713 CG CD OE1 OE2 REMARK 470 ARG A 714 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 LYS A 792 CG CD CE NZ REMARK 470 LEU A 828 CG CD1 CD2 REMARK 470 LEU A 829 CG CD1 CD2 REMARK 470 THR A 900 OG1 CG2 REMARK 470 SER A 901 OG REMARK 470 SER A1021 OG REMARK 470 LYS A1056 CG CD CE NZ REMARK 470 ARG A1077 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1171 CG1 CG2 CD1 REMARK 470 LYS A1180 CG CD CE NZ REMARK 470 SER A1182 OG REMARK 470 ARG A1183 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 379 NH1 ARG A 389 2.12 REMARK 500 O ILE A 481 ND2 ASN A 486 2.15 REMARK 500 OG SER A 608 OG SER A 865 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 949 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG A 978 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS A 979 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 346 69.53 -115.76 REMARK 500 SER A 366 -29.33 -144.21 REMARK 500 PRO A 377 -150.28 -92.37 REMARK 500 SER A 382 134.00 -34.05 REMARK 500 ALA A 383 71.52 68.91 REMARK 500 SER A 425 108.11 -59.77 REMARK 500 ASN A 476 89.59 -171.67 REMARK 500 ASP A 501 -157.38 -75.66 REMARK 500 ALA A 507 63.77 -163.10 REMARK 500 ALA A 519 81.84 -168.02 REMARK 500 SER A 527 -63.15 -122.03 REMARK 500 LEU A 529 16.15 53.17 REMARK 500 ASP A 552 -135.91 50.86 REMARK 500 ASN A 568 -179.74 -68.26 REMARK 500 ASN A 569 -58.59 -124.65 REMARK 500 TYR A 570 80.55 56.41 REMARK 500 SER A 676 -157.05 -83.95 REMARK 500 LYS A 831 13.98 -155.88 REMARK 500 TRP A 833 -4.61 -140.55 REMARK 500 TYR A 875 -87.05 -111.00 REMARK 500 SER A 878 136.51 -179.11 REMARK 500 PRO A 888 4.99 -67.33 REMARK 500 TYR A 890 139.61 79.25 REMARK 500 PHE A 891 142.10 171.41 REMARK 500 VAL A 892 -60.18 -128.58 REMARK 500 SER A 918 -172.34 -69.48 REMARK 500 LEU A 919 11.65 58.32 REMARK 500 ASN A 925 90.73 -163.72 REMARK 500 ALA A 926 106.97 -57.79 REMARK 500 THR A 933 43.85 -84.98 REMARK 500 ILE A 935 -11.73 91.38 REMARK 500 VAL A 950 48.54 -101.62 REMARK 500 PRO A 952 38.94 -93.48 REMARK 500 SER A 955 75.62 52.69 REMARK 500 ARG A 958 -130.76 51.87 REMARK 500 VAL A 959 125.15 -171.00 REMARK 500 ASN A 961 11.37 -141.51 REMARK 500 PHE A 966 -104.06 57.95 REMARK 500 VAL A 972 157.06 98.93 REMARK 500 CYS A 976 -68.44 -125.21 REMARK 500 CYS A 979 61.92 31.27 REMARK 500 VAL A1023 88.80 144.73 REMARK 500 THR A1031 135.36 -170.69 REMARK 500 ARG A1032 66.96 -48.13 REMARK 500 VAL A1078 77.10 -104.73 REMARK 500 PRO A1080 -176.97 -63.03 REMARK 500 TYR A1081 -166.75 -177.51 REMARK 500 TRP A1143 134.96 161.17 REMARK 500 ASN A1156 0.61 -68.57 REMARK 500 GLU A1185 -164.18 -73.49 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 924 ASN A 925 -57.86 REMARK 500 CYS A 967 ASN A 968 -144.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A1024 10.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 5I31 A 341 1246 UNP O15118 NPC1_HUMAN 341 1246 SEQRES 1 A 906 ARG TRP GLY SER PHE CYS VAL ARG ASN PRO GLY CYS VAL SEQRES 2 A 906 ILE PHE PHE SER LEU VAL PHE ILE THR ALA CYS SER SER SEQRES 3 A 906 GLY LEU VAL PHE VAL ARG VAL THR THR ASN PRO VAL ASP SEQRES 4 A 906 LEU TRP SER ALA PRO SER SER GLN ALA ARG LEU GLU LYS SEQRES 5 A 906 GLU TYR PHE ASP GLN HIS PHE GLY PRO PHE PHE ARG THR SEQRES 6 A 906 GLU GLN LEU ILE ILE ARG ALA PRO LEU THR ASP LYS HIS SEQRES 7 A 906 ILE TYR GLN PRO TYR PRO SER GLY ALA ASP VAL PRO PHE SEQRES 8 A 906 GLY PRO PRO LEU ASP ILE GLN ILE LEU HIS GLN VAL LEU SEQRES 9 A 906 ASP LEU GLN ILE ALA ILE GLU ASN ILE THR ALA SER TYR SEQRES 10 A 906 ASP ASN GLU THR VAL THR LEU GLN ASP ILE CYS LEU ALA SEQRES 11 A 906 PRO LEU SER PRO TYR ASN THR ASN CYS THR ILE LEU SER SEQRES 12 A 906 VAL LEU ASN TYR PHE GLN ASN SER HIS SER VAL LEU ASP SEQRES 13 A 906 HIS LYS LYS GLY ASP ASP PHE PHE VAL TYR ALA ASP TYR SEQRES 14 A 906 HIS THR HIS PHE LEU TYR CYS VAL ARG ALA PRO ALA SER SEQRES 15 A 906 LEU ASN ASP THR SER LEU LEU HIS ASP PRO CYS LEU GLY SEQRES 16 A 906 THR PHE GLY GLY PRO VAL PHE PRO TRP LEU VAL LEU GLY SEQRES 17 A 906 GLY TYR ASP ASP GLN ASN TYR ASN ASN ALA THR ALA LEU SEQRES 18 A 906 VAL ILE THR PHE PRO VAL ASN ASN TYR TYR ASN ASP THR SEQRES 19 A 906 GLU LYS LEU GLN ARG ALA GLN ALA TRP GLU LYS GLU PHE SEQRES 20 A 906 ILE ASN PHE VAL LYS ASN TYR LYS ASN PRO ASN LEU THR SEQRES 21 A 906 ILE SER PHE THR ALA GLU ARG SER ILE GLU ASP GLU LEU SEQRES 22 A 906 ASN ARG GLU SER ASP SER ASP VAL PHE THR VAL VAL ILE SEQRES 23 A 906 SER TYR ALA ILE MET PHE LEU TYR ILE SER LEU ALA LEU SEQRES 24 A 906 GLY HIS MET LYS SER CYS ARG ARG LEU LEU VAL ASP SER SEQRES 25 A 906 LYS VAL SER LEU GLY ILE ALA GLY ILE LEU ILE VAL LEU SEQRES 26 A 906 SER SER VAL ALA CYS SER LEU GLY VAL PHE SER TYR ILE SEQRES 27 A 906 GLY LEU PRO LEU THR LEU ILE VAL ILE GLU VAL ILE PRO SEQRES 28 A 906 PHE LEU VAL LEU ALA VAL GLY VAL ASP ASN ILE PHE ILE SEQRES 29 A 906 LEU VAL GLN ALA TYR GLN ARG ASP GLU ARG LEU GLN GLY SEQRES 30 A 906 GLU THR LEU ASP GLN GLN LEU GLY ARG VAL LEU GLY GLU SEQRES 31 A 906 VAL ALA PRO SER MET PHE LEU SER SER PHE SER GLU THR SEQRES 32 A 906 VAL ALA PHE PHE LEU GLY ALA LEU SER VAL MET PRO ALA SEQRES 33 A 906 VAL HIS THR PHE SER LEU PHE ALA GLY LEU ALA VAL PHE SEQRES 34 A 906 ILE ASP PHE LEU LEU GLN ILE THR CYS PHE VAL SER LEU SEQRES 35 A 906 LEU GLY LEU ASP ILE LYS ARG GLN GLU LYS ASN ARG LEU SEQRES 36 A 906 ASP ILE PHE CYS CYS VAL ARG GLY ALA GLU ASP GLY THR SEQRES 37 A 906 SER VAL GLN ALA SER GLU SER CYS LEU PHE ARG PHE PHE SEQRES 38 A 906 LYS ASN SER TYR SER PRO LEU LEU LEU LYS ASP TRP MET SEQRES 39 A 906 ARG PRO ILE VAL ILE ALA ILE PHE VAL GLY VAL LEU SER SEQRES 40 A 906 PHE SER ILE ALA VAL LEU ASN LYS VAL ASP ILE GLY LEU SEQRES 41 A 906 ASP GLN SER LEU SER MET PRO ASP ASP SER TYR MET VAL SEQRES 42 A 906 ASP TYR PHE LYS SER ILE SER GLN TYR LEU HIS ALA GLY SEQRES 43 A 906 PRO PRO VAL TYR PHE VAL LEU GLU GLU GLY HIS ASP TYR SEQRES 44 A 906 THR SER SER LYS GLY GLN ASN MET VAL CYS GLY GLY MET SEQRES 45 A 906 GLY CYS ASN ASN ASP SER LEU VAL GLN GLN ILE PHE ASN SEQRES 46 A 906 ALA ALA GLN LEU ASP ASN TYR THR ARG ILE GLY PHE ALA SEQRES 47 A 906 PRO SER SER TRP ILE ASP ASP TYR PHE ASP TRP VAL LYS SEQRES 48 A 906 PRO GLN SER SER CYS CYS ARG VAL ASP ASN ILE THR ASP SEQRES 49 A 906 GLN PHE CYS ASN ALA SER VAL VAL ASP PRO ALA CYS VAL SEQRES 50 A 906 ARG CYS ARG PRO LEU THR PRO GLU GLY LYS GLN ARG PRO SEQRES 51 A 906 GLN GLY GLY ASP PHE MET ARG PHE LEU PRO MET PHE LEU SEQRES 52 A 906 SER ASP ASN PRO ASN PRO LYS CYS GLY LYS GLY GLY HIS SEQRES 53 A 906 ALA ALA TYR SER SER ALA VAL ASN ILE LEU LEU GLY HIS SEQRES 54 A 906 GLY THR ARG VAL GLY ALA THR TYR PHE MET THR TYR HIS SEQRES 55 A 906 THR VAL LEU GLN THR SER ALA ASP PHE ILE ASP ALA LEU SEQRES 56 A 906 LYS LYS ALA ARG LEU ILE ALA SER ASN VAL THR GLU THR SEQRES 57 A 906 MET GLY ILE ASN GLY SER ALA TYR ARG VAL PHE PRO TYR SEQRES 58 A 906 SER VAL PHE TYR VAL PHE TYR GLU GLN TYR LEU THR ILE SEQRES 59 A 906 ILE ASP ASP THR ILE PHE ASN LEU GLY VAL SER LEU GLY SEQRES 60 A 906 ALA ILE PHE LEU VAL THR MET VAL LEU LEU GLY CYS GLU SEQRES 61 A 906 LEU TRP SER ALA VAL ILE MET CYS ALA THR ILE ALA MET SEQRES 62 A 906 VAL LEU VAL ASN MET PHE GLY VAL MET TRP LEU TRP GLY SEQRES 63 A 906 ILE SER LEU ASN ALA VAL SER LEU VAL ASN LEU VAL MET SEQRES 64 A 906 SER CYS GLY ILE SER VAL GLU PHE CYS SER HIS ILE THR SEQRES 65 A 906 ARG ALA PHE THR VAL SER MET LYS GLY SER ARG VAL GLU SEQRES 66 A 906 ARG ALA GLU GLU ALA LEU ALA HIS MET GLY SER SER VAL SEQRES 67 A 906 PHE SER GLY ILE THR LEU THR LYS PHE GLY GLY ILE VAL SEQRES 68 A 906 VAL LEU ALA PHE ALA LYS SER GLN ILE PHE GLN ILE PHE SEQRES 69 A 906 TYR PHE ARG MET TYR LEU ALA MET VAL LEU LEU GLY ALA SEQRES 70 A 906 THR HIS GLY LEU ILE PHE LEU PRO VAL HELIX 1 AA1 ASN A 349 SER A 366 1 18 HELIX 2 AA2 SER A 386 PHE A 399 1 14 HELIX 3 AA3 GLY A 432 LEU A 435 5 4 HELIX 4 AA4 ASP A 436 ASN A 452 1 17 HELIX 5 AA5 SER A 483 GLN A 489 5 7 HELIX 6 AA6 SER A 491 ASP A 496 1 6 HELIX 7 AA7 HIS A 510 TYR A 515 1 6 HELIX 8 AA8 ASN A 554 ALA A 558 5 5 HELIX 9 AA9 THR A 574 ASN A 593 1 20 HELIX 10 AB1 ALA A 605 ASP A 620 1 16 HELIX 11 AB2 ASP A 620 LEU A 639 1 20 HELIX 12 AB3 ALA A 659 LEU A 672 1 14 HELIX 13 AB4 SER A 676 LEU A 680 5 5 HELIX 14 AB5 LEU A 684 GLU A 688 5 5 HELIX 15 AB6 VAL A 689 ALA A 708 1 20 HELIX 16 AB7 GLU A 730 PHE A 747 1 18 HELIX 17 AB8 MET A 754 ILE A 776 1 23 HELIX 18 AB9 CYS A 778 GLN A 790 1 13 HELIX 19 AC1 TRP A 833 VAL A 852 1 20 HELIX 20 AC2 SER A 865 TYR A 875 1 11 HELIX 21 AC3 GLN A 905 MET A 912 1 8 HELIX 22 AC4 GLY A 913 ASN A 916 5 4 HELIX 23 AC5 ALA A 927 THR A 933 1 7 HELIX 24 AC6 PRO A 939 ASP A 944 1 6 HELIX 25 AC7 TYR A 1037 ILE A 1052 1 16 HELIX 26 AC8 VAL A 1083 GLU A 1089 1 7 HELIX 27 AC9 THR A 1093 LEU A 1116 1 24 HELIX 28 AD1 ALA A 1124 MET A 1138 1 15 HELIX 29 AD2 GLY A 1146 SER A 1153 1 8 HELIX 30 AD3 LEU A 1154 ASN A 1156 5 3 HELIX 31 AD4 LEU A 1157 ILE A 1171 1 15 HELIX 32 AD5 ALA A 1190 GLY A 1201 1 12 HELIX 33 AD6 PHE A 1221 GLY A 1236 1 16 HELIX 34 AD7 ALA A 1237 PHE A 1243 1 7 SHEET 1 AA1 4 LEU A 547 GLY A 548 0 SHEET 2 AA1 4 ALA A 560 VAL A 567 -1 O ALA A 560 N GLY A 548 SHEET 3 AA1 4 ARG A 404 ARG A 411 -1 N ILE A 410 O LEU A 561 SHEET 4 AA1 4 THR A 600 PHE A 603 -1 O SER A 602 N ILE A 409 SHEET 1 AA2 2 ILE A 419 TYR A 420 0 SHEET 2 AA2 2 VAL A 429 PRO A 430 -1 O VAL A 429 N TYR A 420 SHEET 1 AA3 2 ALA A 455 SER A 456 0 SHEET 2 AA3 2 THR A 461 VAL A 462 -1 O VAL A 462 N ALA A 455 SSBOND 1 CYS A 468 CYS A 479 1555 1555 2.03 SSBOND 2 CYS A 516 CYS A 533 1555 1555 2.03 CISPEP 1 TYR A 423 PRO A 424 0 -2.97 CISPEP 2 SER A 473 PRO A 474 0 2.58 CISPEP 3 LEU A 724 GLY A 725 0 2.82 CISPEP 4 VAL A 892 LEU A 893 0 -3.68 CISPEP 5 ALA A 938 PRO A 939 0 -6.73 CISPEP 6 VAL A 959 ASP A 960 0 -6.36 CISPEP 7 ARG A 978 CYS A 979 0 -4.55 CRYST1 181.937 223.071 63.208 90.00 105.31 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005496 0.000000 0.001505 0.00000 SCALE2 0.000000 0.004483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016403 0.00000