HEADER OXIDOREDUCTASE 10-FEB-16 5I39 TITLE HIGH RESOLUTION STRUCTURE OF L-AMINO ACID DEAMINASE FROM PROTEUS TITLE 2 VULGARIS WITH THE DELETION OF THE SPECIFIC INSERTION SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-AMINO ACID DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-471, WITH DELETION OF RESIDUES 326-375; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS VULGARIS; SOURCE 3 ORGANISM_TAXID: 585; SOURCE 4 GENE: LAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MEMBRANE PROTEIN, L-AMINO ACID OXIDASE, LAAO, LAD, LAAD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHOU,Y.JU,L.NIU,M.TENG REVDAT 2 24-AUG-16 5I39 1 JRNL REVDAT 1 03-AUG-16 5I39 0 JRNL AUTH Y.JU,S.TONG,Y.GAO,W.ZHAO,Q.LIU,Q.GU,J.XU,L.NIU,M.TENG,H.ZHOU JRNL TITL CRYSTAL STRUCTURE OF A MEMBRANE-BOUND L-AMINO ACID DEAMINASE JRNL TITL 2 FROM PROTEUS VULGARIS JRNL REF J.STRUCT.BIOL. V. 195 306 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 27422658 JRNL DOI 10.1016/J.JSB.2016.07.008 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 132930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9761 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 507 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 514 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3202 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3091 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4375 ; 1.370 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7147 ; 3.590 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.043 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.847 ;24.328 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ; 9.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3610 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 0.493 ; 1.189 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1571 ; 0.490 ;91.217 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1972 ; 0.672 ; 1.784 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1973 ; 0.672 ;14.402 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1630 ; 0.829 ; 1.333 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1630 ; 0.829 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2383 ; 0.891 ;11.079 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4197 ; 1.805 ;11.468 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4198 ; 1.805 ;11.471 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3202 ; 8.780 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 96 ;16.730 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3539 ; 6.162 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5I39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8,000, 0.1 M HEPES PH 7.5, 10% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.63250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.51400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.85400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.51400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.63250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.85400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 ARG A 30 REMARK 465 ALA A 365 REMARK 465 PRO A 366 REMARK 465 VAL A 367 REMARK 465 VAL A 368 REMARK 465 LYS A 369 REMARK 465 GLU A 370 REMARK 465 SER A 371 REMARK 465 GLY A 372 REMARK 465 GLY A 373 REMARK 465 SER A 374 REMARK 465 SER A 375 REMARK 465 THR A 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 244 CD CE NZ REMARK 470 LYS A 402 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 47.46 -109.29 REMARK 500 GLU A 91 -123.73 -118.10 REMARK 500 THR A 132 -0.85 79.71 REMARK 500 ASN A 161 81.80 -155.59 REMARK 500 VAL A 205 -50.26 -129.55 REMARK 500 THR A 434 -169.31 -163.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1112 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1113 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1114 DISTANCE = 6.33 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 DBREF 5I39 A 30 371 UNP Q9LCB2 Q9LCB2_PROVU 30 325 DBREF 5I39 A 376 471 UNP Q9LCB2 Q9LCB2_PROVU 376 471 SEQADV 5I39 MSE A 18 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 ARG A 19 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 GLY A 20 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 SER A 21 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 HIS A 22 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 HIS A 23 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 HIS A 24 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 HIS A 25 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 HIS A 26 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 HIS A 27 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 GLY A 28 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 SER A 29 UNP Q9LCB2 EXPRESSION TAG SEQADV 5I39 GLY A 372 UNP Q9LCB2 LINKER SEQADV 5I39 GLY A 373 UNP Q9LCB2 LINKER SEQADV 5I39 SER A 374 UNP Q9LCB2 LINKER SEQADV 5I39 SER A 375 UNP Q9LCB2 LINKER SEQRES 1 A 408 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 A 408 GLU GLY ARG PHE VAL PRO GLY THR PRO ARG HIS GLY PHE SEQRES 3 A 408 VAL GLU GLY THR GLU GLY ALA LEU PRO LYS GLN ALA ASP SEQRES 4 A 408 VAL VAL VAL VAL GLY ALA GLY ILE LEU GLY ILE MSE THR SEQRES 5 A 408 ALA ILE ASN LEU VAL GLU ARG GLY LEU SER VAL VAL ILE SEQRES 6 A 408 VAL GLU LYS GLY ASN ILE ALA GLY GLU GLN SER SER ARG SEQRES 7 A 408 PHE TYR GLY GLN ALA ILE SER TYR LYS MSE PRO ASP GLU SEQRES 8 A 408 THR PHE LEU LEU HIS HIS LEU GLY LYS HIS ARG TRP ARG SEQRES 9 A 408 GLU MSE ASN ALA LYS VAL GLY ILE ASP THR THR TYR ARG SEQRES 10 A 408 THR GLN GLY ARG VAL GLU VAL PRO LEU ASP GLU GLU ASP SEQRES 11 A 408 LEU VAL ASN VAL ARG LYS TRP ILE ASP GLU ARG SER LYS SEQRES 12 A 408 ASN VAL GLY SER ASP ILE PRO PHE LYS THR ARG ILE ILE SEQRES 13 A 408 GLU GLY ALA GLU LEU ASN GLN ARG LEU ARG GLY ALA THR SEQRES 14 A 408 THR ASP TRP LYS ILE ALA GLY PHE GLU GLU ASP SER GLY SEQRES 15 A 408 SER PHE ASP PRO GLU VAL ALA THR PHE VAL MSE ALA GLU SEQRES 16 A 408 TYR ALA LYS LYS MSE GLY VAL ARG ILE TYR THR GLN CYS SEQRES 17 A 408 ALA ALA ARG GLY LEU GLU THR GLN ALA GLY VAL ILE SER SEQRES 18 A 408 ASP VAL VAL THR GLU LYS GLY ALA ILE LYS THR SER GLN SEQRES 19 A 408 VAL VAL VAL ALA GLY GLY VAL TRP SER ARG LEU PHE MSE SEQRES 20 A 408 GLN ASN LEU ASN VAL ASP VAL PRO THR LEU PRO ALA TYR SEQRES 21 A 408 GLN SER GLN GLN LEU ILE SER GLY SER PRO THR ALA PRO SEQRES 22 A 408 GLY GLY ASN VAL ALA LEU PRO GLY GLY ILE PHE PHE ARG SEQRES 23 A 408 GLU GLN ALA ASP GLY THR TYR ALA THR SER PRO ARG VAL SEQRES 24 A 408 ILE VAL ALA PRO VAL VAL LYS GLU SER GLY GLY SER SER SEQRES 25 A 408 THR ALA LEU PRO ASP LEU PRO GLU LEU ASN ALA SER LEU SEQRES 26 A 408 GLU LYS LEU LYS ALA GLU PHE PRO ALA PHE LYS GLU SER SEQRES 27 A 408 LYS LEU ILE ASP GLN TRP SER GLY ALA MSE ALA ILE ALA SEQRES 28 A 408 PRO ASP GLU ASN PRO ILE ILE SER GLU VAL LYS GLU TYR SEQRES 29 A 408 PRO GLY LEU VAL ILE ASN THR ALA THR GLY TRP GLY MSE SEQRES 30 A 408 THR GLU SER PRO VAL SER ALA GLU LEU THR ALA ASP LEU SEQRES 31 A 408 LEU LEU GLY LYS LYS PRO VAL LEU ASP PRO LYS PRO PHE SEQRES 32 A 408 SER LEU TYR ARG PHE MODRES 5I39 MSE A 68 MET MODIFIED RESIDUE MODRES 5I39 MSE A 105 MET MODIFIED RESIDUE MODRES 5I39 MSE A 123 MET MODIFIED RESIDUE MODRES 5I39 MSE A 210 MET MODIFIED RESIDUE MODRES 5I39 MSE A 217 MET MODIFIED RESIDUE MODRES 5I39 MSE A 264 MET MODIFIED RESIDUE MODRES 5I39 MSE A 411 MET MODIFIED RESIDUE MODRES 5I39 MSE A 440 MET MODIFIED RESIDUE HET MSE A 68 13 HET MSE A 105 8 HET MSE A 123 8 HET MSE A 210 8 HET MSE A 217 8 HET MSE A 264 8 HET MSE A 411 8 HET MSE A 440 8 HET FAD A 501 53 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *514(H2 O) HELIX 1 AA1 GLY A 63 ARG A 76 1 14 HELIX 2 AA2 GLU A 91 ARG A 95 5 5 HELIX 3 AA3 PRO A 106 ARG A 121 1 16 HELIX 4 AA4 GLU A 122 GLY A 128 1 7 HELIX 5 AA5 ASP A 144 ASN A 161 1 18 HELIX 6 AA6 GLU A 174 LEU A 182 1 9 HELIX 7 AA7 VAL A 205 MSE A 217 1 13 HELIX 8 AA8 GLY A 256 VAL A 258 5 3 HELIX 9 AA9 TRP A 259 ASN A 266 1 8 HELIX 10 AB1 ASP A 380 PHE A 395 1 16 HELIX 11 AB2 PRO A 396 LYS A 399 5 4 HELIX 12 AB3 TRP A 438 GLY A 456 1 19 HELIX 13 AB4 PRO A 463 SER A 467 5 5 SHEET 1 AA1 6 ARG A 220 TYR A 222 0 SHEET 2 AA1 6 VAL A 80 VAL A 83 1 N ILE A 82 O ARG A 220 SHEET 3 AA1 6 VAL A 57 VAL A 60 1 N VAL A 59 O VAL A 81 SHEET 4 AA1 6 VAL A 252 VAL A 254 1 O VAL A 253 N VAL A 60 SHEET 5 AA1 6 LEU A 430 THR A 434 1 O VAL A 431 N VAL A 254 SHEET 6 AA1 6 ILE A 420 GLU A 423 -1 N ILE A 420 O THR A 434 SHEET 1 AA2 3 GLN A 99 ALA A 100 0 SHEET 2 AA2 3 GLY A 199 SER A 200 -1 O GLY A 199 N ALA A 100 SHEET 3 AA2 3 ARG A 134 THR A 135 -1 N ARG A 134 O SER A 200 SHEET 1 AA3 8 THR A 170 ILE A 173 0 SHEET 2 AA3 8 ALA A 192 GLU A 195 -1 O PHE A 194 N ARG A 171 SHEET 3 AA3 8 ARG A 138 GLU A 140 -1 N GLU A 140 O GLY A 193 SHEET 4 AA3 8 ASN A 293 LEU A 296 1 O ASN A 293 N VAL A 139 SHEET 5 AA3 8 ILE A 300 GLU A 304 -1 O PHE A 302 N VAL A 294 SHEET 6 AA3 8 TYR A 310 THR A 312 -1 O ALA A 311 N ARG A 303 SHEET 7 AA3 8 LEU A 274 ILE A 283 -1 N ILE A 283 O TYR A 310 SHEET 8 AA3 8 LEU A 403 ILE A 413 -1 O MSE A 411 N ALA A 276 SHEET 1 AA4 3 ALA A 227 GLN A 233 0 SHEET 2 AA4 3 VAL A 236 THR A 242 -1 O VAL A 241 N ARG A 228 SHEET 3 AA4 3 GLY A 245 LYS A 248 -1 O ILE A 247 N VAL A 240 LINK C ILE A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N THR A 69 1555 1555 1.33 LINK C LYS A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N PRO A 106 1555 1555 1.33 LINK C GLU A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ASN A 124 1555 1555 1.33 LINK C VAL A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N ALA A 211 1555 1555 1.33 LINK C LYS A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N GLY A 218 1555 1555 1.33 LINK C PHE A 263 N MSE A 264 1555 1555 1.33 LINK C MSE A 264 N GLN A 265 1555 1555 1.34 LINK C ALA A 410 N MSE A 411 1555 1555 1.33 LINK C MSE A 411 N ALA A 412 1555 1555 1.33 LINK C GLY A 439 N MSE A 440 1555 1555 1.33 LINK C MSE A 440 N THR A 441 1555 1555 1.33 SITE 1 AC1 41 VAL A 60 GLY A 61 GLY A 63 ILE A 64 SITE 2 AC1 41 LEU A 65 VAL A 83 GLU A 84 LYS A 85 SITE 3 AC1 41 GLU A 91 GLN A 92 SER A 93 ARG A 95 SITE 4 AC1 41 PHE A 96 TYR A 97 GLY A 98 GLN A 99 SITE 5 AC1 41 ALA A 226 ALA A 227 ALA A 255 GLY A 256 SITE 6 AC1 41 GLY A 257 TRP A 259 GLN A 278 GLN A 280 SITE 7 AC1 41 MSE A 411 THR A 436 GLY A 437 TRP A 438 SITE 8 AC1 41 GLY A 439 MSE A 440 THR A 441 EDO A 503 SITE 9 AC1 41 EDO A 510 HOH A 610 HOH A 611 HOH A 620 SITE 10 AC1 41 HOH A 660 HOH A 736 HOH A 870 HOH A 879 SITE 11 AC1 41 HOH A 891 SITE 1 AC2 7 GLY A 42 PHE A 43 ASN A 87 ILE A 88 SITE 2 AC2 7 PHE A 208 HOH A 602 HOH A 763 SITE 1 AC3 5 LYS A 85 TRP A 259 FAD A 501 HOH A 672 SITE 2 AC3 5 HOH A 880 SITE 1 AC4 4 ASP A 144 GLU A 145 ILE A 191 HOH A 690 SITE 1 AC5 5 LEU A 230 THR A 232 HOH A 667 HOH A 719 SITE 2 AC5 5 HOH A 796 SITE 1 AC6 5 ASN A 385 LEU A 388 GLU A 389 LYS A 392 SITE 2 AC6 5 HOH A 740 SITE 1 AC7 5 VAL A 318 GLU A 417 TRP A 438 HOH A 669 SITE 2 AC7 5 HOH A 762 SITE 1 AC8 7 GLU A 140 VAL A 141 LEU A 143 LEU A 296 SITE 2 AC8 7 PHE A 301 HOH A 730 HOH A 770 SITE 1 AC9 6 ARG A 134 GLU A 304 GLN A 305 HOH A 622 SITE 2 AC9 6 HOH A 637 HOH A 648 SITE 1 AD1 8 GLN A 278 VAL A 316 ILE A 317 VAL A 318 SITE 2 AD1 8 GLY A 437 TRP A 438 FAD A 501 HOH A 891 CRYST1 57.265 63.708 125.028 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007998 0.00000