HEADER HYDROLASE 10-FEB-16 5I3E TITLE CRYSTAL STRUCTURE OF PUTATIVE PUTATIVE DEOXYRIBONUCLEASE-2 FROM TITLE 2 BURKHOLDERIA THAILANDENSIS, E264 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DEOXYRIBONUCLEASE-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BUTHA.18065.A.B1; COMPND 5 SYNONYM: DEOXYRIBONUCLEASE II; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_II0389; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BUTHA.18065.A.B1 KEYWDS SSGCID, PUTATIVE DEOXYRIBONUCLEASE-2, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 06-MAR-24 5I3E 1 REMARK REVDAT 5 17-JUL-19 5I3E 1 REMARK REVDAT 4 22-NOV-17 5I3E 1 REMARK REVDAT 3 14-JUN-17 5I3E 1 JRNL REVDAT 2 12-APR-17 5I3E 1 JRNL REVDAT 1 15-FEB-17 5I3E 0 JRNL AUTH A.VARELA-RAMIREZ,J.ABENDROTH,A.A.MEJIA,I.Q.PHAN,D.D.LORIMER, JRNL AUTH 2 T.E.EDWARDS,R.J.AGUILERA JRNL TITL STRUCTURE OF ACID DEOXYRIBONUCLEASE. JRNL REF NUCLEIC ACIDS RES. V. 45 6217 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28369538 JRNL DOI 10.1093/NAR/GKX222 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 76000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 4.9469 0.95 2669 154 0.1520 0.1724 REMARK 3 2 4.9469 - 3.9276 0.97 2650 152 0.1217 0.1310 REMARK 3 3 3.9276 - 3.4315 0.97 2639 137 0.1252 0.1357 REMARK 3 4 3.4315 - 3.1179 0.97 2671 144 0.1345 0.1789 REMARK 3 5 3.1179 - 2.8945 0.97 2666 126 0.1481 0.1751 REMARK 3 6 2.8945 - 2.7239 0.98 2668 131 0.1584 0.1980 REMARK 3 7 2.7239 - 2.5875 0.98 2636 138 0.1494 0.1976 REMARK 3 8 2.5875 - 2.4749 0.99 2692 157 0.1578 0.1824 REMARK 3 9 2.4749 - 2.3796 0.99 2670 137 0.1525 0.1843 REMARK 3 10 2.3796 - 2.2975 0.99 2674 140 0.1504 0.1891 REMARK 3 11 2.2975 - 2.2257 0.99 2671 130 0.1464 0.2095 REMARK 3 12 2.2257 - 2.1621 0.99 2700 143 0.1504 0.1939 REMARK 3 13 2.1621 - 2.1051 0.99 2705 132 0.1495 0.1987 REMARK 3 14 2.1051 - 2.0538 0.99 2626 137 0.1494 0.1797 REMARK 3 15 2.0538 - 2.0071 0.99 2728 136 0.1531 0.1773 REMARK 3 16 2.0071 - 1.9644 0.99 2666 132 0.1646 0.2088 REMARK 3 17 1.9644 - 1.9251 0.99 2705 138 0.1647 0.2119 REMARK 3 18 1.9251 - 1.8888 0.99 2683 150 0.1630 0.2065 REMARK 3 19 1.8888 - 1.8550 0.99 2685 151 0.1641 0.1965 REMARK 3 20 1.8550 - 1.8236 1.00 2632 130 0.1687 0.2232 REMARK 3 21 1.8236 - 1.7942 0.99 2765 138 0.1791 0.2205 REMARK 3 22 1.7942 - 1.7666 0.99 2634 121 0.1893 0.2422 REMARK 3 23 1.7666 - 1.7406 0.99 2707 133 0.1952 0.2503 REMARK 3 24 1.7406 - 1.7161 0.99 2657 143 0.2119 0.2497 REMARK 3 25 1.7161 - 1.6929 1.00 2711 142 0.2215 0.2663 REMARK 3 26 1.6929 - 1.6709 1.00 2648 130 0.2332 0.2923 REMARK 3 27 1.6709 - 1.6500 0.99 2697 143 0.2377 0.2665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5660 REMARK 3 ANGLE : 0.886 7755 REMARK 3 CHIRALITY : 0.058 843 REMARK 3 PLANARITY : 0.005 1003 REMARK 3 DIHEDRAL : 11.377 3386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0264 7.4029 52.3789 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.3173 REMARK 3 T33: 0.0797 T12: -0.0626 REMARK 3 T13: -0.0450 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.9341 L22: 0.5107 REMARK 3 L33: 0.6140 L12: 0.4216 REMARK 3 L13: -0.1114 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: 0.5199 S13: 0.0386 REMARK 3 S21: -0.1947 S22: 0.1453 S23: 0.0757 REMARK 3 S31: -0.1446 S32: -0.0142 S33: 0.1010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5330 6.2538 63.4023 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1960 REMARK 3 T33: 0.1396 T12: 0.0239 REMARK 3 T13: -0.0448 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 0.7449 L22: 1.0967 REMARK 3 L33: 0.8243 L12: 0.4471 REMARK 3 L13: 0.1169 L23: 0.4466 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: 0.1418 S13: 0.1007 REMARK 3 S21: -0.1485 S22: -0.0955 S23: 0.2884 REMARK 3 S31: -0.1374 S32: -0.2214 S33: 0.1315 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0851 -0.7177 69.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.1137 REMARK 3 T33: 0.1187 T12: 0.0199 REMARK 3 T13: -0.0110 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 1.0012 L22: 0.7430 REMARK 3 L33: 0.7402 L12: 0.3838 REMARK 3 L13: 0.3161 L23: 0.5227 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.1602 S13: -0.2924 REMARK 3 S21: 0.0216 S22: 0.0644 S23: -0.0958 REMARK 3 S31: 0.0725 S32: 0.0363 S33: -0.0406 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7079 26.0464 101.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0586 REMARK 3 T33: 0.0558 T12: 0.0013 REMARK 3 T13: 0.0068 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.2512 L22: 1.2663 REMARK 3 L33: 1.5391 L12: -0.0398 REMARK 3 L13: -0.4034 L23: 0.3878 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.1422 S13: 0.0443 REMARK 3 S21: 0.1854 S22: 0.0491 S23: -0.0236 REMARK 3 S31: -0.0116 S32: 0.1765 S33: -0.0647 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8463 17.5736 102.2826 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.0630 REMARK 3 T33: 0.1424 T12: 0.0050 REMARK 3 T13: 0.0379 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.7788 L22: 1.0122 REMARK 3 L33: 0.7669 L12: 0.5020 REMARK 3 L13: 0.2912 L23: 0.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.0779 S13: -0.0827 REMARK 3 S21: 0.1483 S22: 0.0012 S23: 0.2323 REMARK 3 S31: 0.0966 S32: -0.0399 S33: -0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8709 20.1314 102.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.0822 REMARK 3 T33: 0.1504 T12: 0.0000 REMARK 3 T13: 0.0549 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.7311 L22: 0.4394 REMARK 3 L33: 1.6570 L12: -0.1412 REMARK 3 L13: -1.2281 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: -0.2406 S13: -0.1701 REMARK 3 S21: 0.2323 S22: 0.0227 S23: 0.2146 REMARK 3 S31: 0.1315 S32: 0.0759 S33: 0.0078 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8658 28.7066 90.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.0509 REMARK 3 T33: 0.1493 T12: 0.0005 REMARK 3 T13: -0.0006 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.6810 L22: 0.7986 REMARK 3 L33: 0.5810 L12: 0.1275 REMARK 3 L13: -0.1157 L23: 0.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.0546 S13: 0.0790 REMARK 3 S21: 0.0263 S22: 0.0367 S23: 0.2556 REMARK 3 S31: -0.0084 S32: -0.0828 S33: -0.0320 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 285 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2431 33.7632 82.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.1073 T22: 0.0497 REMARK 3 T33: 0.1113 T12: -0.0107 REMARK 3 T13: -0.0110 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.2702 L22: 1.1372 REMARK 3 L33: 0.8789 L12: -0.0872 REMARK 3 L13: -0.2955 L23: 0.0442 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.1531 S13: 0.0982 REMARK 3 S21: -0.1599 S22: 0.0556 S23: 0.1148 REMARK 3 S31: -0.0637 S32: -0.0292 S33: -0.0315 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-13; 25-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ALS; ROTATING ANODE REMARK 200 BEAMLINE : 8.2.2; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999995; 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111); RIGAKU REMARK 200 VARIMAX REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 SCREEN, B12: 100MM BISTRIS PH REMARK 280 6.5, 28% PEG MME 2000, TRAYS SET UP AT 26.5MG/ML, CRYO: 15% EG; REMARK 280 FOR PHASING A CRYSTAL FROM 25% PEG 3350, 100MM BISTRIS PH 6.0 REMARK 280 WAS INCUBATED FOR 30S IN A BUFFER CONTAINING 15% EG AND 750MM REMARK 280 NAI, IODIDE DATA WERE COLLECTED AT THE IN-HOUSE SOURCE; REMARK 280 BUTHA.18065.A.B1.PS18111 AT 26.5 MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.87500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 349 REMARK 465 GLU A 350 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 349 REMARK 465 GLU B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 VAL A 132 CG1 CG2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 SER A 190 OG REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 VAL B 132 CG1 CG2 REMARK 470 ASP B 175 CG OD1 OD2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 ASP B 251 CG OD1 OD2 REMARK 470 LYS B 333 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 93 O HOH B 501 2.18 REMARK 500 O HOH B 530 O HOH B 706 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 58 44.36 -80.04 REMARK 500 ASN A 83 136.08 -171.85 REMARK 500 LEU A 168 51.67 38.68 REMARK 500 LEU A 225 -58.39 -120.27 REMARK 500 ILE A 259 -57.21 68.80 REMARK 500 ASP A 314 95.73 -160.12 REMARK 500 ASP B 72 73.69 -151.05 REMARK 500 ASN B 83 134.25 -172.78 REMARK 500 SER B 128 -9.15 -143.64 REMARK 500 PRO B 130 84.28 -63.01 REMARK 500 HIS B 161 -70.19 -120.43 REMARK 500 LEU B 168 49.80 38.00 REMARK 500 LEU B 225 -56.97 -120.13 REMARK 500 ASP B 249 -74.46 -91.21 REMARK 500 ILE B 259 -57.27 71.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.18065.A RELATED DB: TARGETTRACK DBREF 5I3E A 1 350 UNP Q2T8B0 DNS2_BURTA 1 350 DBREF 5I3E B 1 350 UNP Q2T8B0 DNS2_BURTA 1 350 SEQADV 5I3E MET A -7 UNP Q2T8B0 INITIATING METHIONINE SEQADV 5I3E ALA A -6 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS A -5 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS A -4 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS A -3 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS A -2 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS A -1 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS A 0 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E MET B -7 UNP Q2T8B0 INITIATING METHIONINE SEQADV 5I3E ALA B -6 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS B -5 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS B -4 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS B -3 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS B -2 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS B -1 UNP Q2T8B0 EXPRESSION TAG SEQADV 5I3E HIS B 0 UNP Q2T8B0 EXPRESSION TAG SEQRES 1 A 358 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE SER PRO SEQRES 2 A 358 ARG ASP GLU GLN ASN ARG SER VAL ASP LEU TRP PHE ALA SEQRES 3 A 358 TYR LYS VAL PRO LYS LEU THR LYS ASP ALA ASP SER ASP SEQRES 4 A 358 SER ALA SER GLY TYR GLU TYR VAL TYR TYR ASP ARG GLN SEQRES 5 A 358 VAL GLY ALA VAL GLN LYS SER PRO ASN LEU MET ASN ASP SEQRES 6 A 358 PRO LYS GLY ALA LEU PHE TYR THR LEU ASP SER VAL PHE SEQRES 7 A 358 GLY ASP PRO GLY ASP THR THR GLY TRP ILE LEU TYR ASN SEQRES 8 A 358 ASP GLU MET PRO ALA ASP ALA ASN ARG SER ASN ASN ALA SEQRES 9 A 358 THR LEU GLY HIS THR LYS GLY VAL ILE ALA PHE ASP ILE SEQRES 10 A 358 ALA SER SER SER ALA LEU TRP LEU LEU HIS SER TRP PRO SEQRES 11 A 358 LYS TYR ALA SER PRO SER VAL PRO GLY VAL PRO THR PRO SEQRES 12 A 358 LEU TYR GLY GLN THR PHE LEU CYS LEU SER LEU ASP LEU SEQRES 13 A 358 ALA THR ALA GLY LYS LEU ALA ALA GLN MET ALA LEU HIS SEQRES 14 A 358 GLN GLN PRO GLN VAL TYR LEU PRO ARG THR GLY GLY LEU SEQRES 15 A 358 ASP HIS THR SER PRO LEU TYR ALA LEU THR GLN PRO LEU SEQRES 16 A 358 ASN ALA SER ALA PRO GLY ASP SER ASP SER LEU ASP PHE SEQRES 17 A 358 LYS THR ARG GLY GLY VAL PRO PHE LYS VAL ILE ALA LYS SEQRES 18 A 358 ASN ARG LYS TRP GLY LYS ASP PHE TRP ASN ASP LEU VAL SEQRES 19 A 358 GLY PRO THR LEU LYS ALA ASP MET TYR VAL GLU THR TRP SEQRES 20 A 358 ILE ARG GLY LYS ILE PRO PRO VAL LEU ASP SER ASP GLY SEQRES 21 A 358 VAL HIS LYS THR TYR ASP ILE LYS PHE ILE ASP LEU ARG SEQRES 22 A 358 LYS LEU GLY ALA PRO TRP ALA TRP PRO GLU THR GLN ASP SEQRES 23 A 358 HIS ALA LYS TRP GLY ILE THR THR THR ASP ASN TRP VAL SEQRES 24 A 358 CYS VAL GLY ASP ILE ASN ARG MET VAL THR GLN GLU LYS SEQRES 25 A 358 ARG GLY GLY GLY THR ILE ALA PHE GLN ASP PRO LYS LEU SEQRES 26 A 358 TRP LYS ALA LEU CYS GLU THR ASP LEU ILE ILE PRO PRO SEQRES 27 A 358 PRO GLY LYS THR ASP ALA GLN ALA ARG ALA MET ILE ARG SEQRES 28 A 358 LYS THR HIS GLU PRO ALA GLU SEQRES 1 B 358 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE SER PRO SEQRES 2 B 358 ARG ASP GLU GLN ASN ARG SER VAL ASP LEU TRP PHE ALA SEQRES 3 B 358 TYR LYS VAL PRO LYS LEU THR LYS ASP ALA ASP SER ASP SEQRES 4 B 358 SER ALA SER GLY TYR GLU TYR VAL TYR TYR ASP ARG GLN SEQRES 5 B 358 VAL GLY ALA VAL GLN LYS SER PRO ASN LEU MET ASN ASP SEQRES 6 B 358 PRO LYS GLY ALA LEU PHE TYR THR LEU ASP SER VAL PHE SEQRES 7 B 358 GLY ASP PRO GLY ASP THR THR GLY TRP ILE LEU TYR ASN SEQRES 8 B 358 ASP GLU MET PRO ALA ASP ALA ASN ARG SER ASN ASN ALA SEQRES 9 B 358 THR LEU GLY HIS THR LYS GLY VAL ILE ALA PHE ASP ILE SEQRES 10 B 358 ALA SER SER SER ALA LEU TRP LEU LEU HIS SER TRP PRO SEQRES 11 B 358 LYS TYR ALA SER PRO SER VAL PRO GLY VAL PRO THR PRO SEQRES 12 B 358 LEU TYR GLY GLN THR PHE LEU CYS LEU SER LEU ASP LEU SEQRES 13 B 358 ALA THR ALA GLY LYS LEU ALA ALA GLN MET ALA LEU HIS SEQRES 14 B 358 GLN GLN PRO GLN VAL TYR LEU PRO ARG THR GLY GLY LEU SEQRES 15 B 358 ASP HIS THR SER PRO LEU TYR ALA LEU THR GLN PRO LEU SEQRES 16 B 358 ASN ALA SER ALA PRO GLY ASP SER ASP SER LEU ASP PHE SEQRES 17 B 358 LYS THR ARG GLY GLY VAL PRO PHE LYS VAL ILE ALA LYS SEQRES 18 B 358 ASN ARG LYS TRP GLY LYS ASP PHE TRP ASN ASP LEU VAL SEQRES 19 B 358 GLY PRO THR LEU LYS ALA ASP MET TYR VAL GLU THR TRP SEQRES 20 B 358 ILE ARG GLY LYS ILE PRO PRO VAL LEU ASP SER ASP GLY SEQRES 21 B 358 VAL HIS LYS THR TYR ASP ILE LYS PHE ILE ASP LEU ARG SEQRES 22 B 358 LYS LEU GLY ALA PRO TRP ALA TRP PRO GLU THR GLN ASP SEQRES 23 B 358 HIS ALA LYS TRP GLY ILE THR THR THR ASP ASN TRP VAL SEQRES 24 B 358 CYS VAL GLY ASP ILE ASN ARG MET VAL THR GLN GLU LYS SEQRES 25 B 358 ARG GLY GLY GLY THR ILE ALA PHE GLN ASP PRO LYS LEU SEQRES 26 B 358 TRP LYS ALA LEU CYS GLU THR ASP LEU ILE ILE PRO PRO SEQRES 27 B 358 PRO GLY LYS THR ASP ALA GLN ALA ARG ALA MET ILE ARG SEQRES 28 B 358 LYS THR HIS GLU PRO ALA GLU HET EDO A 400 4 HET EDO B 400 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *735(H2 O) HELIX 1 AA1 GLY A 60 GLY A 71 1 12 HELIX 2 AA2 PRO A 87 ASN A 91 5 5 HELIX 3 AA3 LEU A 148 HIS A 161 1 14 HELIX 4 AA4 SER A 178 THR A 184 1 7 HELIX 5 AA5 ASP A 220 LEU A 225 1 6 HELIX 6 AA6 LEU A 225 LYS A 231 1 7 HELIX 7 AA7 ARG A 265 GLY A 268 5 4 HELIX 8 AA8 THR A 276 ASP A 278 5 3 HELIX 9 AA9 ASP A 314 GLU A 323 1 10 HELIX 10 AB1 THR A 334 THR A 345 1 12 HELIX 11 AB2 GLY B 60 GLY B 71 1 12 HELIX 12 AB3 LEU B 148 HIS B 161 1 14 HELIX 13 AB4 SER B 178 LEU B 183 1 6 HELIX 14 AB5 ASP B 220 LEU B 225 1 6 HELIX 15 AB6 LEU B 225 LYS B 231 1 7 HELIX 16 AB7 ARG B 265 GLY B 268 5 4 HELIX 17 AB8 THR B 276 ASP B 278 5 3 HELIX 18 AB9 ASP B 314 GLU B 323 1 10 HELIX 19 AC1 THR B 334 THR B 345 1 12 SHEET 1 AA1 8 GLN A 49 LYS A 50 0 SHEET 2 AA1 8 TYR A 38 TYR A 41 -1 N TYR A 40 O GLN A 49 SHEET 3 AA1 8 LEU A 15 LYS A 20 -1 N PHE A 17 O TYR A 41 SHEET 4 AA1 8 GLN A 139 ASP A 147 -1 O GLN A 139 N LYS A 20 SHEET 5 AA1 8 SER A 113 LEU A 118 -1 N LEU A 118 O LEU A 142 SHEET 6 AA1 8 GLY A 103 ASP A 108 -1 N VAL A 104 O LEU A 117 SHEET 7 AA1 8 THR A 77 TYR A 82 -1 N ILE A 80 O ILE A 105 SHEET 8 AA1 8 VAL A 166 ARG A 170 -1 O ARG A 170 N TRP A 79 SHEET 1 AA2 2 LEU A 24 ASP A 27 0 SHEET 2 AA2 2 SER A 30 ALA A 33 -1 O SER A 30 N LYS A 26 SHEET 1 AA3 5 SER A 195 LYS A 201 0 SHEET 2 AA3 5 PRO A 207 LYS A 213 -1 O ALA A 212 N ASP A 196 SHEET 3 AA3 5 GLY A 307 GLN A 313 -1 O GLY A 307 N LYS A 213 SHEET 4 AA3 5 TRP A 290 GLY A 294 -1 N VAL A 291 O PHE A 312 SHEET 5 AA3 5 TRP A 282 ILE A 284 -1 N GLY A 283 O CYS A 292 SHEET 1 AA4 2 VAL A 247 LEU A 248 0 SHEET 2 AA4 2 HIS A 254 LYS A 255 -1 O LYS A 255 N VAL A 247 SHEET 1 AA5 3 ALA A 272 PRO A 274 0 SHEET 2 AA5 3 LYS A 260 ASP A 263 -1 N ILE A 262 O TRP A 273 SHEET 3 AA5 3 ASP A 325 ILE A 327 -1 O LEU A 326 N PHE A 261 SHEET 1 AA6 8 GLN B 49 LYS B 50 0 SHEET 2 AA6 8 TYR B 38 TYR B 41 -1 N TYR B 40 O GLN B 49 SHEET 3 AA6 8 LEU B 15 LYS B 20 -1 N PHE B 17 O TYR B 41 SHEET 4 AA6 8 GLN B 139 ASP B 147 -1 O CYS B 143 N TRP B 16 SHEET 5 AA6 8 SER B 113 LEU B 118 -1 N LEU B 118 O LEU B 142 SHEET 6 AA6 8 GLY B 103 ASP B 108 -1 N VAL B 104 O LEU B 117 SHEET 7 AA6 8 THR B 77 TYR B 82 -1 N GLY B 78 O PHE B 107 SHEET 8 AA6 8 VAL B 166 ARG B 170 -1 O ARG B 170 N TRP B 79 SHEET 1 AA7 2 LEU B 24 THR B 25 0 SHEET 2 AA7 2 ASP B 31 ALA B 33 -1 O ALA B 33 N LEU B 24 SHEET 1 AA8 5 SER B 195 LYS B 201 0 SHEET 2 AA8 5 PRO B 207 LYS B 213 -1 O ALA B 212 N ASP B 196 SHEET 3 AA8 5 GLY B 307 GLN B 313 -1 O GLY B 307 N LYS B 213 SHEET 4 AA8 5 TRP B 290 GLY B 294 -1 N VAL B 291 O PHE B 312 SHEET 5 AA8 5 TRP B 282 ILE B 284 -1 N GLY B 283 O CYS B 292 SHEET 1 AA9 2 VAL B 247 SER B 250 0 SHEET 2 AA9 2 VAL B 253 LYS B 255 -1 O LYS B 255 N VAL B 247 SHEET 1 AB1 3 ALA B 272 PRO B 274 0 SHEET 2 AB1 3 LYS B 260 ASP B 263 -1 N ILE B 262 O TRP B 273 SHEET 3 AB1 3 ASP B 325 ILE B 327 -1 O LEU B 326 N PHE B 261 CISPEP 1 TYR A 124 ALA A 125 0 3.42 CISPEP 2 TYR B 124 ALA B 125 0 -0.84 SITE 1 AC1 7 THR A 101 TRP A 116 LEU A 118 GLN A 162 SITE 2 AC1 7 ASP A 295 GLY A 308 HOH A 584 SITE 1 AC2 7 THR B 101 TRP B 116 LEU B 118 GLN B 162 SITE 2 AC2 7 ASP B 295 GLY B 308 HOH B 515 CRYST1 51.160 61.750 102.600 90.00 92.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019547 0.000000 0.000725 0.00000 SCALE2 0.000000 0.016194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009753 0.00000