HEADER ISOMERASE 10-FEB-16 5I3K TITLE STRUCTURE-FUNCTION STUDIES ON ROLE OF HYDROPHOBIC CLAMPING OF A BASIC TITLE 2 GLUTAMATE IN CATALYSIS BY TRIOSEPHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE, GLYCOSOMAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIOSEPHOSPHATE ISOMERASE, CATALYSIS, HYDROPHOBIC CLAMPING, PGA, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.DRAKE,A.M.GULICK,J.P.RICHARD,X.ZHAI,K.KIM,C.J.REINHARDT REVDAT 3 27-SEP-23 5I3K 1 JRNL REMARK LINK REVDAT 2 15-JUN-16 5I3K 1 JRNL REVDAT 1 18-MAY-16 5I3K 0 JRNL AUTH J.P.RICHARD,T.L.AMYES,M.M.MALABANAN,X.ZHAI,K.J.KIM, JRNL AUTH 2 C.J.REINHARDT,R.K.WIERENGA,E.J.DRAKE,A.M.GULICK JRNL TITL STRUCTURE-FUNCTION STUDIES OF HYDROPHOBIC RESIDUES THAT JRNL TITL 2 CLAMP A BASIC GLUTAMATE SIDE CHAIN DURING CATALYSIS BY JRNL TITL 3 TRIOSEPHOSPHATE ISOMERASE. JRNL REF BIOCHEMISTRY V. 55 3036 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27149328 JRNL DOI 10.1021/ACS.BIOCHEM.6B00311 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 43087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.9445 - 5.5657 0.91 2430 162 0.2036 0.2152 REMARK 3 2 5.5657 - 4.4178 0.91 2396 148 0.1861 0.2071 REMARK 3 3 4.4178 - 3.8594 0.96 2527 116 0.1811 0.2233 REMARK 3 4 3.8594 - 3.5065 0.97 2535 132 0.1976 0.2428 REMARK 3 5 3.5065 - 3.2552 0.97 2579 127 0.2163 0.2877 REMARK 3 6 3.2552 - 3.0633 0.98 2548 155 0.2220 0.2471 REMARK 3 7 3.0633 - 2.9099 0.99 2575 133 0.2322 0.3209 REMARK 3 8 2.9099 - 2.7832 0.99 2570 162 0.2375 0.3007 REMARK 3 9 2.7832 - 2.6761 0.99 2588 127 0.2352 0.2734 REMARK 3 10 2.6761 - 2.5837 0.99 2556 154 0.2455 0.2927 REMARK 3 11 2.5837 - 2.5029 0.99 2614 135 0.2474 0.3326 REMARK 3 12 2.5029 - 2.4314 0.99 2570 154 0.2573 0.3293 REMARK 3 13 2.4314 - 2.3674 0.99 2591 132 0.2611 0.3136 REMARK 3 14 2.3674 - 2.3096 0.99 2592 128 0.2686 0.3827 REMARK 3 15 2.3096 - 2.2571 0.99 2597 132 0.2766 0.3167 REMARK 3 16 2.2571 - 2.2090 0.99 2581 141 0.2681 0.3391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7460 REMARK 3 ANGLE : 0.431 10162 REMARK 3 CHIRALITY : 0.043 1207 REMARK 3 PLANARITY : 0.003 1300 REMARK 3 DIHEDRAL : 11.625 4378 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.284 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.209 REMARK 200 RESOLUTION RANGE LOW (A) : 72.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3TIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 4000, 150-250 MM NACL, 50 REMARK 280 MM EPPS, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.80000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 224 CG CD OE1 NE2 REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 ASN C 34 CG OD1 ND2 REMARK 470 GLU C 53 CG CD OE1 OE2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LYS C 84 CG CD CE NZ REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 GLN C 181 CG CD OE1 NE2 REMARK 470 LYS C 217 CG CD CE NZ REMARK 470 GLN C 224 CG CD OE1 NE2 REMARK 470 ARG C 226 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 247 CG CD CE NZ REMARK 470 GLU D 53 CG CD OE1 OE2 REMARK 470 LYS D 70 CG CD CE NZ REMARK 470 GLU D 129 CG CD OE1 OE2 REMARK 470 GLN D 132 CG CD OE1 NE2 REMARK 470 GLU D 133 CG CD OE1 OE2 REMARK 470 ARG D 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 155 CG CD CE NZ REMARK 470 LYS D 176 CG CD CE NZ REMARK 470 GLN D 181 CG CD OE1 NE2 REMARK 470 GLU D 185 CG CD OE1 OE2 REMARK 470 LYS D 197 CG CD CE NZ REMARK 470 ILE D 198 CG1 CG2 CD1 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 ARG D 220 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 247 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS C 95 O1 PGA C 301 2.12 REMARK 500 C GLY C 212 O4P PGA C 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -151.50 58.35 REMARK 500 LYS B 13 -145.84 55.39 REMARK 500 THR B 249 30.55 -86.08 REMARK 500 LYS C 13 -144.45 59.34 REMARK 500 SER C 30 31.19 -86.54 REMARK 500 LYS D 13 -143.63 54.64 REMARK 500 THR D 249 40.07 -88.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 429 O REMARK 620 2 HOH A 469 O 78.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 473 O REMARK 620 2 HOH A 497 O 109.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I3F RELATED DB: PDB REMARK 900 RELATED ID: 5I3I RELATED DB: PDB REMARK 900 RELATED ID: 5I3J RELATED DB: PDB REMARK 900 RELATED ID: 5I3G RELATED DB: PDB REMARK 900 RELATED ID: 5I3H RELATED DB: PDB DBREF 5I3K A 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5I3K B 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5I3K C 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5I3K D 1 250 UNP P04789 TPIS_TRYBB 1 250 SEQADV 5I3K ALA A 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQADV 5I3K ALA B 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQADV 5I3K ALA C 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQADV 5I3K ALA D 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQRES 1 A 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 A 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 A 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 A 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 A 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 A 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 A 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 A 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 A 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 A 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 A 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 A 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 A 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 A 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 A 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 A 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 A 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 A 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 A 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 A 250 ALA THR GLN SEQRES 1 B 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 B 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 B 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 B 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 B 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 B 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 B 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 B 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 B 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 B 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 B 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 B 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 B 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 B 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 B 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 B 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 B 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 B 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 B 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 B 250 ALA THR GLN SEQRES 1 C 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 C 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 C 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 C 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 C 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 C 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 C 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 C 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 C 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 C 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 C 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 C 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 C 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 C 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 C 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 C 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 C 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 C 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 C 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 C 250 ALA THR GLN SEQRES 1 D 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 D 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 D 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 D 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 D 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 D 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 D 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 D 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 D 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 D 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 D 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 D 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 D 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 D 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 D 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 D 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 D 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 D 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 D 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 D 250 ALA THR GLN HET NA A 301 1 HET NA A 302 1 HET PGA B 301 9 HET PGA C 301 9 HET NA C 302 1 HET PGA D 301 9 HETNAM NA SODIUM ION HETNAM PGA 2-PHOSPHOGLYCOLIC ACID FORMUL 5 NA 3(NA 1+) FORMUL 7 PGA 3(C2 H5 O6 P) FORMUL 11 HOH *378(H2 O) HELIX 1 AA1 SER A 17 SER A 30 1 14 HELIX 2 AA2 THR A 44 VAL A 46 5 3 HELIX 3 AA3 HIS A 47 LEU A 55 1 9 HELIX 4 AA4 SER A 79 PHE A 86 1 8 HELIX 5 AA5 HIS A 95 TYR A 102 1 8 HELIX 6 AA6 THR A 105 SER A 119 1 15 HELIX 7 AA7 THR A 130 SER A 136 1 7 HELIX 8 AA8 ARG A 138 LYS A 152 1 15 HELIX 9 AA9 LYS A 153 LEU A 154 5 2 HELIX 10 AB1 LYS A 155 ALA A 160 5 6 HELIX 11 AB2 PRO A 168 ILE A 172 5 5 HELIX 12 AB3 THR A 179 ILE A 198 1 20 HELIX 13 AB4 GLY A 199 LEU A 206 1 8 HELIX 14 AB5 ASN A 218 GLN A 224 1 7 HELIX 15 AB6 GLY A 234 PRO A 240 5 7 HELIX 16 AB7 GLU A 241 ALA A 248 1 8 HELIX 17 AB8 SER B 17 SER B 30 1 14 HELIX 18 AB9 HIS B 47 LEU B 55 1 9 HELIX 19 AC1 SER B 79 PHE B 86 1 8 HELIX 20 AC2 HIS B 95 TYR B 102 1 8 HELIX 21 AC3 THR B 105 SER B 119 1 15 HELIX 22 AC4 THR B 130 SER B 136 1 7 HELIX 23 AC5 ARG B 138 LYS B 152 1 15 HELIX 24 AC6 LYS B 153 LEU B 154 5 2 HELIX 25 AC7 LYS B 155 ALA B 160 5 6 HELIX 26 AC8 PRO B 168 ILE B 172 5 5 HELIX 27 AC9 THR B 179 ILE B 198 1 20 HELIX 28 AD1 GLY B 199 LEU B 206 1 8 HELIX 29 AD2 ASN B 218 GLN B 224 1 7 HELIX 30 AD3 GLY B 234 PRO B 240 5 7 HELIX 31 AD4 GLU B 241 ALA B 248 1 8 HELIX 32 AD5 SER C 17 SER C 30 1 14 HELIX 33 AD6 HIS C 47 LEU C 55 1 9 HELIX 34 AD7 SER C 79 PHE C 86 1 8 HELIX 35 AD8 HIS C 95 TYR C 102 1 8 HELIX 36 AD9 THR C 105 SER C 119 1 15 HELIX 37 AE1 THR C 130 SER C 136 1 7 HELIX 38 AE2 ARG C 138 LYS C 153 1 16 HELIX 39 AE3 LEU C 154 ALA C 160 5 7 HELIX 40 AE4 PRO C 168 ILE C 172 5 5 HELIX 41 AE5 THR C 179 ILE C 198 1 20 HELIX 42 AE6 GLY C 199 LEU C 206 1 8 HELIX 43 AE7 ASN C 218 GLN C 224 1 7 HELIX 44 AE8 GLY C 234 PRO C 240 5 7 HELIX 45 AE9 GLU C 241 ALA C 248 1 8 HELIX 46 AF1 SER D 17 SER D 30 1 14 HELIX 47 AF2 HIS D 47 LEU D 55 1 9 HELIX 48 AF3 SER D 79 PHE D 86 1 8 HELIX 49 AF4 HIS D 95 TYR D 102 1 8 HELIX 50 AF5 THR D 105 SER D 119 1 15 HELIX 51 AF6 THR D 130 SER D 136 1 7 HELIX 52 AF7 ARG D 138 LYS D 153 1 16 HELIX 53 AF8 LEU D 154 ALA D 160 5 7 HELIX 54 AF9 PRO D 168 ILE D 172 5 5 HELIX 55 AG1 THR D 179 ILE D 198 1 20 HELIX 56 AG2 GLY D 199 LEU D 206 1 8 HELIX 57 AG3 ASN D 218 GLN D 224 1 7 HELIX 58 AG4 GLY D 234 PRO D 240 5 7 HELIX 59 AG5 GLU D 241 ALA D 248 1 8 SHEET 1 AA1 9 ILE A 7 ASN A 11 0 SHEET 2 AA1 9 GLN A 38 ALA A 42 1 O VAL A 40 N ALA A 10 SHEET 3 AA1 9 PHE A 60 ALA A 64 1 O ALA A 63 N VAL A 41 SHEET 4 AA1 9 TRP A 90 LEU A 93 1 O VAL A 92 N ALA A 64 SHEET 5 AA1 9 MET A 122 ILE A 127 1 O ILE A 124 N ILE A 91 SHEET 6 AA1 9 VAL A 162 TYR A 166 1 O VAL A 163 N ALA A 125 SHEET 7 AA1 9 ILE A 208 TYR A 210 1 O LEU A 209 N TYR A 166 SHEET 8 AA1 9 GLY A 230 VAL A 233 1 O ALA A 232 N TYR A 210 SHEET 9 AA1 9 ILE A 7 ASN A 11 1 N ASN A 11 O VAL A 233 SHEET 1 AA2 9 ILE B 7 ASN B 11 0 SHEET 2 AA2 9 GLN B 38 ALA B 42 1 O VAL B 40 N ALA B 10 SHEET 3 AA2 9 PHE B 60 ALA B 64 1 O VAL B 61 N VAL B 41 SHEET 4 AA2 9 TRP B 90 LEU B 93 1 O VAL B 92 N ALA B 64 SHEET 5 AA2 9 MET B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 AA2 9 VAL B 162 TYR B 166 1 O VAL B 163 N ALA B 125 SHEET 7 AA2 9 ILE B 208 GLY B 211 1 O LEU B 209 N ILE B 164 SHEET 8 AA2 9 GLY B 230 VAL B 233 1 O ALA B 232 N TYR B 210 SHEET 9 AA2 9 ILE B 7 ASN B 11 1 N ASN B 11 O VAL B 233 SHEET 1 AA3 9 ILE C 7 ASN C 11 0 SHEET 2 AA3 9 GLN C 38 ALA C 42 1 O VAL C 40 N ALA C 10 SHEET 3 AA3 9 PHE C 60 ALA C 64 1 O ALA C 63 N VAL C 41 SHEET 4 AA3 9 TRP C 90 LEU C 93 1 O VAL C 92 N ALA C 64 SHEET 5 AA3 9 MET C 122 ILE C 127 1 O ILE C 124 N ILE C 91 SHEET 6 AA3 9 VAL C 162 TYR C 166 1 O ALA C 165 N ALA C 125 SHEET 7 AA3 9 ILE C 208 GLY C 211 1 O LEU C 209 N ILE C 164 SHEET 8 AA3 9 GLY C 230 VAL C 233 1 O GLY C 230 N TYR C 210 SHEET 9 AA3 9 ILE C 7 ASN C 11 1 N ASN C 11 O VAL C 233 SHEET 1 AA4 9 ILE D 7 ASN D 11 0 SHEET 2 AA4 9 GLN D 38 ALA D 42 1 O VAL D 40 N ALA D 10 SHEET 3 AA4 9 PHE D 60 ALA D 64 1 O VAL D 61 N VAL D 41 SHEET 4 AA4 9 TRP D 90 LEU D 93 1 O VAL D 92 N ALA D 64 SHEET 5 AA4 9 MET D 122 ILE D 127 1 O ILE D 124 N ILE D 91 SHEET 6 AA4 9 VAL D 162 TYR D 166 1 O VAL D 163 N ALA D 125 SHEET 7 AA4 9 ILE D 208 GLY D 211 1 O LEU D 209 N ILE D 164 SHEET 8 AA4 9 GLY D 230 VAL D 233 1 O ALA D 232 N TYR D 210 SHEET 9 AA4 9 ILE D 7 ASN D 11 1 N ASN D 11 O VAL D 233 LINK NE2 HIS C 95 O1 PGA C 301 1555 1555 1.31 LINK N SER C 213 O4P PGA C 301 1555 1555 1.30 LINK NA NA A 301 O HOH A 429 1555 1555 2.41 LINK NA NA A 301 O HOH A 469 1555 1555 2.40 LINK NA NA A 302 O HOH A 473 1555 1555 2.47 LINK NA NA A 302 O HOH A 497 1555 1555 2.57 LINK NA NA C 302 O HOH C 479 1555 1555 2.42 SITE 1 AC1 3 ALA A 160 HOH A 429 HOH A 469 SITE 1 AC2 2 HOH A 473 HOH A 497 SITE 1 AC3 11 LYS B 13 GLU B 167 ALA B 171 ILE B 172 SITE 2 AC3 11 GLY B 173 GLY B 234 GLY B 235 HOH B 405 SITE 3 AC3 11 HOH B 421 HOH B 445 HOH B 447 SITE 1 AC4 13 LYS C 13 GLU C 167 ALA C 171 ILE C 172 SITE 2 AC4 13 GLY C 173 GLY C 212 VAL C 214 ALA C 232 SITE 3 AC4 13 GLY C 234 GLY C 235 HOH C 421 HOH C 426 SITE 4 AC4 13 HOH C 448 SITE 1 AC5 2 PHE C 74 HOH C 479 SITE 1 AC6 10 LYS D 13 GLU D 167 ILE D 172 GLY D 173 SITE 2 AC6 10 GLY D 212 ALA D 232 GLY D 234 GLY D 235 SITE 3 AC6 10 HOH D 426 HOH D 433 CRYST1 69.890 87.600 76.380 90.00 107.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014308 0.000000 0.004470 0.00000 SCALE2 0.000000 0.011416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013717 0.00000