HEADER PEPTIDE BINDING PROTEIN 10-FEB-16 5I3L TITLE DPF3B IN COMPLEX WITH H3K14AC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN DPF3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BRG1-ASSOCIATED FACTOR 45C,BAF45C,ZINC FINGER PROTEIN CER- COMPND 5 D4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: H3K14AC PEPTIDE; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPF3, BAF45C, CERD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,Y.LIU,J.R.WALKER,A.ZHAO,S.QIN,P.LOPPNAU,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 8 15-NOV-23 5I3L 1 REMARK REVDAT 7 27-SEP-23 5I3L 1 LINK REVDAT 6 15-AUG-18 5I3L 1 REMARK REVDAT 5 09-AUG-17 5I3L 1 SOURCE JRNL REMARK REVDAT 4 24-AUG-16 5I3L 1 JRNL REVDAT 3 03-AUG-16 5I3L 1 JRNL REVDAT 2 02-MAR-16 5I3L 1 REMARK REVDAT 1 24-FEB-16 5I3L 0 JRNL AUTH W.LI,A.ZHAO,W.TEMPEL,P.LOPPNAU,Y.LIU JRNL TITL CRYSTAL STRUCTURE OF DPF3B IN COMPLEX WITH AN ACETYLATED JRNL TITL 2 HISTONE PEPTIDE. JRNL REF J.STRUCT.BIOL. V. 195 365 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 27402533 JRNL DOI 10.1016/J.JSB.2016.07.001 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1973 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.21000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : 1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.877 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1960 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1736 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2656 ; 1.682 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4015 ; 1.153 ; 3.014 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;39.475 ;24.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;13.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.861 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2210 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 982 ; 1.578 ; 2.261 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 982 ; 1.576 ; 2.261 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1226 ; 2.328 ; 3.378 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 1004 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0720 135.1014 0.2264 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.0198 REMARK 3 T33: 0.0775 T12: 0.0099 REMARK 3 T13: 0.0007 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.6613 L22: 3.7201 REMARK 3 L33: 1.7797 L12: -2.1376 REMARK 3 L13: 1.1085 L23: -1.1073 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.2074 S13: -0.2975 REMARK 3 S21: 0.2777 S22: 0.2244 S23: 0.1180 REMARK 3 S31: 0.0584 S32: -0.0593 S33: -0.1821 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 255 B 1004 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3410 149.8200 -2.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0125 REMARK 3 T33: 0.0565 T12: -0.0318 REMARK 3 T13: 0.0622 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 3.1521 L22: 0.4011 REMARK 3 L33: 3.5170 L12: 0.1048 REMARK 3 L13: 2.3499 L23: -0.5817 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: 0.0880 S13: 0.0359 REMARK 3 S21: 0.1310 S22: -0.0226 S23: 0.0502 REMARK 3 S31: -0.1297 S32: 0.0433 S33: 0.1300 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 17 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0058 139.7262 7.4216 REMARK 3 T TENSOR REMARK 3 T11: 0.2159 T22: 0.2127 REMARK 3 T33: 0.1622 T12: 0.0347 REMARK 3 T13: 0.0314 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 9.2399 L22: 2.9066 REMARK 3 L33: 2.0103 L12: -4.8592 REMARK 3 L13: 2.5822 L23: -0.6878 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: -0.9032 S13: -0.1983 REMARK 3 S21: 0.1459 S22: 0.4464 S23: 0.0279 REMARK 3 S31: -0.0847 S32: -0.3178 S33: -0.2034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5I3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28215 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.12500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL, ULTIMATELY DERIVED FROM PDB REMARK 200 ENTRY 3V43. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, 0.1 M HEPES, 5% REMARK 280 MPD, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.22300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.22300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.91100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.82050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.91100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.82050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.22300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.91100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.82050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.22300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.91100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.82050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 254 REMARK 465 THR A 255 REMARK 465 LYS A 368 REMARK 465 GLY B 254 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 NH2 C 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 ASP A 329 OD1 OD2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 LEU A 367 C O CB CG CD1 CD2 REMARK 470 THR B 255 N CB OG1 CG2 REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 310 CE NZ REMARK 470 GLU B 326 CG CD OE1 OE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 ARG C 8 NH1 NH2 REMARK 470 LYS C 9 CD CE NZ REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 271 112.22 -163.24 REMARK 500 ASN A 327 55.00 37.13 REMARK 500 LEU B 266 13.17 58.49 REMARK 500 MET B 271 112.72 -162.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 262 SG REMARK 620 2 CYS A 265 SG 109.5 REMARK 620 3 HIS A 292 ND1 100.9 96.6 REMARK 620 4 CYS A 295 SG 112.4 115.5 120.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 CYS A 287 SG 109.1 REMARK 620 3 CYS A 313 SG 113.7 111.3 REMARK 620 4 CYS A 316 SG 107.9 107.6 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 319 SG REMARK 620 2 CYS A 322 SG 109.9 REMARK 620 3 HIS A 342 ND1 104.9 95.5 REMARK 620 4 CYS A 345 SG 119.1 112.0 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 CYS A 337 SG 104.6 REMARK 620 3 CYS A 360 SG 111.7 113.5 REMARK 620 4 CYS A 363 SG 109.7 105.2 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 262 SG REMARK 620 2 CYS B 265 SG 106.6 REMARK 620 3 HIS B 292 ND1 100.7 93.4 REMARK 620 4 CYS B 295 SG 111.7 120.3 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 284 SG REMARK 620 2 CYS B 287 SG 108.2 REMARK 620 3 CYS B 313 SG 112.5 112.0 REMARK 620 4 CYS B 316 SG 106.3 109.1 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 319 SG REMARK 620 2 CYS B 322 SG 109.9 REMARK 620 3 HIS B 342 ND1 101.0 95.6 REMARK 620 4 CYS B 345 SG 118.9 113.9 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1007 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 333 O REMARK 620 2 ASP B 335 OD1 98.4 REMARK 620 3 HOH B1139 O 87.5 172.1 REMARK 620 4 HOH B1141 O 79.4 83.0 93.1 REMARK 620 5 HOH B1147 O 94.7 81.1 103.7 162.1 REMARK 620 6 HOH B1150 O 173.7 85.4 89.2 106.1 80.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 334 SG REMARK 620 2 CYS B 337 SG 105.3 REMARK 620 3 CYS B 360 SG 111.5 111.5 REMARK 620 4 CYS B 363 SG 108.6 105.4 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY C 13 and ALY C REMARK 800 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALY C 14 and ALA C REMARK 800 15 DBREF 5I3L A 254 368 UNP Q92784 DPF3_HUMAN 254 368 DBREF 5I3L B 254 368 UNP Q92784 DPF3_HUMAN 254 368 DBREF 5I3L C 1 21 PDB 5I3L 5I3L 1 21 SEQRES 1 A 115 GLY THR VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU SEQRES 2 A 115 GLY GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU SEQRES 3 A 115 GLU LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS SEQRES 4 A 115 PRO THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA SEQRES 5 A 115 VAL LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER SEQRES 6 A 115 CYS ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU SEQRES 7 A 115 LEU PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR SEQRES 8 A 115 CYS LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER SEQRES 9 A 115 TRP SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 B 115 GLY THR VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU SEQRES 2 B 115 GLY GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU SEQRES 3 B 115 GLU LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS SEQRES 4 B 115 PRO THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA SEQRES 5 B 115 VAL LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER SEQRES 6 B 115 CYS ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU SEQRES 7 B 115 LEU PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR SEQRES 8 B 115 CYS LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER SEQRES 9 B 115 TRP SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 C 21 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 C 21 ALY ALA PRO ARG LYS GLN LEU NH2 HET ALY C 14 12 HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET ZN A1004 1 HET EDO A1005 4 HET UNX A1006 1 HET UNX A1007 1 HET UNX A1008 1 HET UNX A1009 1 HET UNX A1010 1 HET UNX A1011 1 HET UNX A1012 1 HET UNX A1013 1 HET UNX A1014 1 HET UNX A1015 1 HET UNX A1016 1 HET UNX A1017 1 HET UNX A1018 1 HET UNX A1019 1 HET UNX A1020 1 HET UNX A1021 1 HET ZN B1001 1 HET ZN B1002 1 HET ZN B1003 1 HET ZN B1004 1 HET UNX B1005 1 HET UNX B1006 1 HET NA B1007 1 HET UNX B1008 1 HET UNX B1009 1 HET UNX B1010 1 HET UNX B1011 1 HET UNX B1012 1 HET UNX B1013 1 HET UNX B1014 1 HET UNX B1015 1 HET UNX B1016 1 HET UNX B1017 1 HET UNX B1018 1 HET UNX B1019 1 HET UNX B1020 1 HET UNX B1021 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ALY C8 H16 N2 O3 FORMUL 4 ZN 8(ZN 2+) FORMUL 8 EDO C2 H6 O2 FORMUL 9 UNX 32(X) FORMUL 31 NA NA 1+ FORMUL 46 HOH *91(H2 O) HELIX 1 AA1 THR A 299 LYS A 307 1 9 HELIX 2 AA2 CYS A 360 LEU A 366 1 7 HELIX 3 AA3 THR B 299 LYS B 307 1 9 HELIX 4 AA4 ASN B 327 ASP B 329 5 3 HELIX 5 AA5 CYS B 360 LYS B 368 1 9 HELIX 6 AA6 LYS C 4 GLY C 12 1 9 SHEET 1 AA1 2 VAL A 282 SER A 283 0 SHEET 2 AA1 2 SER A 290 GLY A 291 -1 O GLY A 291 N VAL A 282 SHEET 1 AA2 3 GLY A 340 HIS A 342 0 SHEET 2 AA2 3 LEU A 331 PHE A 333 -1 N LEU A 332 O TYR A 341 SHEET 3 AA2 3 ARG C 2 THR C 3 -1 O ARG C 2 N PHE A 333 SHEET 1 AA3 2 VAL B 282 SER B 283 0 SHEET 2 AA3 2 SER B 290 GLY B 291 -1 O GLY B 291 N VAL B 282 SHEET 1 AA4 2 LEU B 331 PHE B 333 0 SHEET 2 AA4 2 GLY B 340 HIS B 342 -1 O TYR B 341 N LEU B 332 LINK C GLY C 13 N ALY C 14 1555 1555 1.33 LINK C ALY C 14 N ALA C 15 1555 1555 1.33 LINK SG CYS A 262 ZN ZN A1001 1555 1555 2.30 LINK SG CYS A 265 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 284 ZN ZN A1002 1555 1555 2.30 LINK SG CYS A 287 ZN ZN A1002 1555 1555 2.36 LINK ND1 HIS A 292 ZN ZN A1001 1555 1555 2.06 LINK SG CYS A 295 ZN ZN A1001 1555 1555 2.30 LINK SG CYS A 313 ZN ZN A1002 1555 1555 2.33 LINK SG CYS A 316 ZN ZN A1002 1555 1555 2.35 LINK SG CYS A 319 ZN ZN A1003 1555 1555 2.26 LINK SG CYS A 322 ZN ZN A1003 1555 1555 2.30 LINK SG CYS A 334 ZN ZN A1004 1555 1555 2.36 LINK SG CYS A 337 ZN ZN A1004 1555 1555 2.32 LINK ND1 HIS A 342 ZN ZN A1003 1555 1555 2.11 LINK SG CYS A 345 ZN ZN A1003 1555 1555 2.29 LINK SG CYS A 360 ZN ZN A1004 1555 1555 2.34 LINK SG CYS A 363 ZN ZN A1004 1555 1555 2.32 LINK SG CYS B 262 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 265 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 284 ZN ZN B1002 1555 1555 2.36 LINK SG CYS B 287 ZN ZN B1002 1555 1555 2.34 LINK ND1 HIS B 292 ZN ZN B1001 1555 1555 2.10 LINK SG CYS B 295 ZN ZN B1001 1555 1555 2.35 LINK SG CYS B 313 ZN ZN B1002 1555 1555 2.33 LINK SG CYS B 316 ZN ZN B1002 1555 1555 2.29 LINK SG CYS B 319 ZN ZN B1003 1555 1555 2.31 LINK SG CYS B 322 ZN ZN B1003 1555 1555 2.35 LINK O PHE B 333 NA NA B1007 1555 1555 2.34 LINK SG CYS B 334 ZN ZN B1004 1555 1555 2.30 LINK OD1 ASP B 335 NA NA B1007 1555 1555 2.50 LINK SG CYS B 337 ZN ZN B1004 1555 1555 2.35 LINK ND1 HIS B 342 ZN ZN B1003 1555 1555 2.08 LINK SG CYS B 345 ZN ZN B1003 1555 1555 2.29 LINK SG CYS B 360 ZN ZN B1004 1555 1555 2.33 LINK SG CYS B 363 ZN ZN B1004 1555 1555 2.34 LINK NA NA B1007 O HOH B1139 1555 1555 2.96 LINK NA NA B1007 O HOH B1141 1555 1555 2.24 LINK NA NA B1007 O HOH B1147 1555 1555 2.33 LINK NA NA B1007 O HOH B1150 1555 1555 2.27 CISPEP 1 ASN A 347 PRO A 348 0 5.59 CISPEP 2 ASN B 347 PRO B 348 0 -0.81 SITE 1 AC1 4 CYS A 262 CYS A 265 HIS A 292 CYS A 295 SITE 1 AC2 4 CYS A 284 CYS A 287 CYS A 313 CYS A 316 SITE 1 AC3 4 CYS A 319 CYS A 322 HIS A 342 CYS A 345 SITE 1 AC4 4 CYS A 334 CYS A 337 CYS A 360 CYS A 363 SITE 1 AC5 6 SER A 269 GLU A 280 THR A 303 GLU A 304 SITE 2 AC5 6 LYS A 307 HOH A1115 SITE 1 AC6 4 CYS B 262 CYS B 265 HIS B 292 CYS B 295 SITE 1 AC7 4 CYS B 284 CYS B 287 CYS B 313 CYS B 316 SITE 1 AC8 4 CYS B 319 CYS B 322 HIS B 342 CYS B 345 SITE 1 AC9 4 CYS B 334 CYS B 337 CYS B 360 CYS B 363 SITE 1 AD1 6 PHE B 333 ASP B 335 HOH B1139 HOH B1141 SITE 2 AD1 6 HOH B1147 HOH B1150 SITE 1 AD2 7 ASP A 263 PHE A 264 SER A 290 CYS A 313 SITE 2 AD2 7 ILE A 314 GLY C 12 ALA C 15 SITE 1 AD3 9 ASP A 263 PHE A 264 LEU A 266 ARG A 289 SITE 2 AD3 9 SER A 290 CYS A 313 ILE A 314 GLY C 13 SITE 3 AD3 9 PRO C 16 CRYST1 99.822 121.641 56.446 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017716 0.00000