HEADER IMMUNE SYSTEM 12-FEB-16 5I4F TITLE SCFV 2D10 COMPLEXED WITH ALPHA 1,6 MANNOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV 2D10; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS STRUCTURAL BIOLOGY, MULTI-SPECIFICITY, AFFINITY MATURED ANTIBODY, KEYWDS 2 DISACCHARIDE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.VASHISHT,A.KUMAR,K.J.KAUR,D.M.SALUNKE REVDAT 3 08-NOV-23 5I4F 1 HETSYN REVDAT 2 29-JUL-20 5I4F 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 21-DEC-16 5I4F 0 JRNL AUTH S.VASHISHT,A.KUMAR,K.J.KAUR,D.M.SALUNKE JRNL TITL ANTIBODIES CAN EXPLOIT MOLECULAR CROWDING TO BIND NEW JRNL TITL 2 ANTIGENS AT NONCANONICAL PARATOPE POSITIONS JRNL REF CHEMISTRYSELECT V. 1 6287 2016 JRNL REFN ESSN 2365-6549 JRNL DOI 10.1002/SLCT.201600945 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.TAPRYAL,V.GAUR,K.J.KAUR,D.M.SALUNKE REMARK 1 TITL STRUCTURAL EVALUATION OF A MIMICRY-RECOGNIZING PARATOPE: REMARK 1 TITL 2 PLASTICITY IN ANTIGEN-ANTIBODY INTERACTIONS MANIFESTS IN REMARK 1 TITL 3 MOLECULAR MIMICRY REMARK 1 REF J. IMMUNOL. V. 191 456 2013 REMARK 1 REFN ESSN 1550-6606 REMARK 1 PMID 23733869 REMARK 1 DOI 10.4049/JIMMUNOL.1203260 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1233 - 4.7549 0.97 1339 163 0.2072 0.2119 REMARK 3 2 4.7549 - 3.7755 0.99 1341 126 0.1370 0.1436 REMARK 3 3 3.7755 - 3.2987 1.00 1332 137 0.1431 0.1569 REMARK 3 4 3.2987 - 2.9972 1.00 1282 157 0.1648 0.2041 REMARK 3 5 2.9972 - 2.7825 1.00 1281 169 0.1750 0.1954 REMARK 3 6 2.7825 - 2.6185 1.00 1280 150 0.1869 0.2204 REMARK 3 7 2.6185 - 2.4874 1.00 1301 147 0.1770 0.2006 REMARK 3 8 2.4874 - 2.3791 1.00 1283 143 0.1674 0.2254 REMARK 3 9 2.3791 - 2.2876 1.00 1288 152 0.1676 0.1859 REMARK 3 10 2.2876 - 2.2087 1.00 1275 151 0.1555 0.1810 REMARK 3 11 2.2087 - 2.1396 1.00 1288 133 0.1620 0.1835 REMARK 3 12 2.1396 - 2.0785 1.00 1286 142 0.1555 0.1853 REMARK 3 13 2.0785 - 2.0237 1.00 1281 139 0.1616 0.1810 REMARK 3 14 2.0237 - 1.9744 1.00 1276 136 0.1488 0.1766 REMARK 3 15 1.9744 - 1.9295 1.00 1284 134 0.1486 0.2192 REMARK 3 16 1.9295 - 1.8884 0.99 1294 122 0.1621 0.1871 REMARK 3 17 1.8884 - 1.8507 0.99 1255 156 0.1618 0.1908 REMARK 3 18 1.8507 - 1.8157 1.00 1287 132 0.1696 0.2054 REMARK 3 19 1.8157 - 1.7833 0.99 1259 143 0.1658 0.2178 REMARK 3 20 1.7833 - 1.7531 0.99 1252 151 0.1636 0.2024 REMARK 3 21 1.7531 - 1.7248 0.99 1268 138 0.1684 0.1879 REMARK 3 22 1.7248 - 1.6983 1.00 1284 134 0.1693 0.2204 REMARK 3 23 1.6983 - 1.6733 0.99 1237 145 0.1946 0.2426 REMARK 3 24 1.6733 - 1.6497 0.99 1269 132 0.1899 0.2354 REMARK 3 25 1.6497 - 1.6274 0.99 1285 136 0.1907 0.2355 REMARK 3 26 1.6274 - 1.6063 0.99 1261 138 0.1943 0.2163 REMARK 3 27 1.6063 - 1.5862 1.00 1268 127 0.2031 0.2633 REMARK 3 28 1.5862 - 1.5671 0.98 1254 145 0.2274 0.2655 REMARK 3 29 1.5671 - 1.5489 0.99 1258 128 0.2440 0.2451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1946 REMARK 3 ANGLE : 1.593 2639 REMARK 3 CHIRALITY : 0.106 277 REMARK 3 PLANARITY : 0.005 318 REMARK 3 DIHEDRAL : 27.752 812 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -43.8106 8.4079 6.7676 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.0983 REMARK 3 T33: 0.1266 T12: -0.0031 REMARK 3 T13: -0.0126 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.0911 L22: 0.4489 REMARK 3 L33: 0.8489 L12: 0.1742 REMARK 3 L13: 0.1917 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.0811 S13: -0.0875 REMARK 3 S21: 0.0615 S22: 0.0245 S23: 0.0108 REMARK 3 S31: -0.0510 S32: -0.0788 S33: -0.0500 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000216863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 173.15 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.549 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4H0G REMARK 200 REMARK 200 REMARK: HEXAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 6.5, MAGNESIUM SULPHATE (1.5 M), REMARK 280 POTASSIUM SODIUM TARTRATE TETRAHYDRATE (0.1M)., PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.79600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.59200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.59200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.79600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 183 O HOH A 401 1.90 REMARK 500 O HOH A 517 O HOH A 628 2.08 REMARK 500 O HOH A 441 O HOH A 634 2.09 REMARK 500 O HOH A 590 O HOH A 674 2.13 REMARK 500 O HOH A 612 O HOH A 625 2.17 REMARK 500 O HOH A 449 O HOH A 647 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 410 O HOH A 410 5555 1.53 REMARK 500 O2 MAN B 1 O HOH A 496 3454 2.01 REMARK 500 OE2 GLU A 223 O2 MAN C 1 4565 2.05 REMARK 500 O HOH A 442 O HOH A 647 3454 2.11 REMARK 500 O HOH A 647 O HOH A 672 2565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 177 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 44 -25.63 132.33 REMARK 500 VAL A 195 -51.85 76.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 43 LYS A 44 143.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 5I4F A 1 251 PDB 5I4F 5I4F 1 251 SEQRES 1 A 251 MET GLU ILE GLN LEU GLN GLN SER GLY PRO GLU LEU VAL SEQRES 2 A 251 LYS PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER SEQRES 3 A 251 GLY TYR SER PHE THR ASP TYR ILE MET LEU TRP VAL LYS SEQRES 4 A 251 GLN SER HIS GLY LYS SER LEU GLU TRP ILE GLY ASN ILE SEQRES 5 A 251 ASN PRO TYR TYR GLY SER THR SER TYR ASN LEU LYS PHE SEQRES 6 A 251 LYS GLY LYS ALA THR LEU THR VAL ASP LYS SER SER SER SEQRES 7 A 251 THR ALA TYR MET GLN LEU ASN SER LEU THR SER GLU ASP SEQRES 8 A 251 SER ALA VAL TYR TYR CYS ALA ARG LYS ASN TYR TYR GLY SEQRES 9 A 251 SER SER LEU ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 A 251 VAL SER SER ALA LYS THR THR GLY GLY GLY GLY SER GLY SEQRES 11 A 251 GLY GLY GLY SER GLY GLY GLY GLY SER ASP VAL VAL MET SEQRES 12 A 251 THR GLN THR PRO PHE SER LEU PRO VAL SER LEU GLY ASP SEQRES 13 A 251 GLN ALA SER ILE SER CYS ARG SER SER GLN SER LEU VAL SEQRES 14 A 251 HIS SER ASN GLY ASN THR TYR LEU HIS TRP TYR LEU GLN SEQRES 15 A 251 LYS PRO GLY GLN SER PRO LYS LEU LEU ILE TYR LYS VAL SEQRES 16 A 251 SER ASN ARG PHE SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 17 A 251 SER GLY SER GLY THR ASP PHE THR LEU LYS ILE SER ARG SEQRES 18 A 251 VAL GLU ALA GLU ASP LEU GLY VAL TYR PHE CYS SER GLN SEQRES 19 A 251 SER THR HIS VAL PRO TYR THR PHE GLY GLY GLY THR LYS SEQRES 20 A 251 LEU GLU ILE LYS HET MAN B 1 12 HET MAN B 2 11 HET MAN C 1 24 HET MAN C 2 22 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 MAN 4(C6 H12 O6) FORMUL 4 HOH *291(H2 O) HELIX 1 AA1 SER A 29 TYR A 33 5 5 HELIX 2 AA2 LEU A 63 LYS A 66 5 4 HELIX 3 AA3 LYS A 75 SER A 77 5 3 HELIX 4 AA4 THR A 88 SER A 92 5 5 HELIX 5 AA5 GLU A 223 LEU A 227 5 5 SHEET 1 AA1 4 GLN A 4 GLN A 7 0 SHEET 2 AA1 4 VAL A 19 SER A 26 -1 O LYS A 24 N GLN A 6 SHEET 3 AA1 4 THR A 79 LEU A 84 -1 O ALA A 80 N CYS A 23 SHEET 4 AA1 4 ALA A 69 ASP A 74 -1 N THR A 72 O TYR A 81 SHEET 1 AA2 6 GLU A 11 VAL A 13 0 SHEET 2 AA2 6 THR A 114 VAL A 118 1 O THR A 117 N VAL A 13 SHEET 3 AA2 6 ALA A 93 LYS A 100 -1 N ALA A 93 O LEU A 116 SHEET 4 AA2 6 ILE A 34 GLN A 40 -1 N LEU A 36 O ALA A 98 SHEET 5 AA2 6 LEU A 46 ILE A 52 -1 O ILE A 49 N TRP A 37 SHEET 6 AA2 6 THR A 59 TYR A 61 -1 O SER A 60 N ASN A 51 SHEET 1 AA3 4 GLU A 11 VAL A 13 0 SHEET 2 AA3 4 THR A 114 VAL A 118 1 O THR A 117 N VAL A 13 SHEET 3 AA3 4 ALA A 93 LYS A 100 -1 N ALA A 93 O LEU A 116 SHEET 4 AA3 4 LEU A 107 TRP A 110 -1 O TYR A 109 N ARG A 99 SHEET 1 AA4 4 MET A 143 THR A 146 0 SHEET 2 AA4 4 ALA A 158 SER A 164 -1 O ARG A 163 N THR A 144 SHEET 3 AA4 4 ASP A 214 ILE A 219 -1 O ILE A 219 N ALA A 158 SHEET 4 AA4 4 PHE A 206 SER A 211 -1 N SER A 207 O LYS A 218 SHEET 1 AA5 6 SER A 149 VAL A 152 0 SHEET 2 AA5 6 THR A 246 ILE A 250 1 O LYS A 247 N LEU A 150 SHEET 3 AA5 6 GLY A 228 GLN A 234 -1 N GLY A 228 O LEU A 248 SHEET 4 AA5 6 LEU A 177 GLN A 182 -1 N GLN A 182 O VAL A 229 SHEET 5 AA5 6 PRO A 188 TYR A 193 -1 O LEU A 191 N TRP A 179 SHEET 6 AA5 6 ASN A 197 ARG A 198 -1 O ASN A 197 N TYR A 193 SHEET 1 AA6 4 SER A 149 VAL A 152 0 SHEET 2 AA6 4 THR A 246 ILE A 250 1 O LYS A 247 N LEU A 150 SHEET 3 AA6 4 GLY A 228 GLN A 234 -1 N GLY A 228 O LEU A 248 SHEET 4 AA6 4 THR A 241 PHE A 242 -1 O THR A 241 N GLN A 234 SSBOND 1 CYS A 23 CYS A 97 1555 1555 2.04 SSBOND 2 CYS A 162 CYS A 232 1555 1555 2.10 LINK O6 MAN B 1 C1 MAN B 2 1555 1555 1.35 LINK O6 AMAN C 1 C1 AMAN C 2 1555 1555 1.36 LINK O6 BMAN C 1 C1 BMAN C 2 1555 1555 1.35 CISPEP 1 THR A 146 PRO A 147 0 -3.45 CISPEP 2 VAL A 238 PRO A 239 0 3.70 CRYST1 81.093 81.093 74.388 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012332 0.007120 0.000000 0.00000 SCALE2 0.000000 0.014239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013443 0.00000