HEADER METAL BINDING PROTEIN 12-FEB-16 5I4J TITLE DPS4 FROM NOSTOC PUNCTIFORME IN COMPLEX WITH ZN IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRITIN, DPS FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DPS4-DNA BINDING PROTEIN FROM STARVED CELLS.; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 272131; SOURCE 4 GENE: NPUN_R5799; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METAL BINDING PROTEIN, FERRITIN LIKE EXPDTA X-RAY DIFFRACTION AUTHOR C.HOWE,V.K.MOPARTHI,K.PERSSON,K.STENSJO REVDAT 3 10-JAN-24 5I4J 1 LINK REVDAT 2 13-SEP-17 5I4J 1 REMARK REVDAT 1 01-FEB-17 5I4J 0 JRNL AUTH C.HOWE,V.K.MOPARTHI,K.PERSSON,K.STENSJO JRNL TITL ON THE TRAIL OF IRON INTO DPS4 FROM N. PUNCTIFORME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6400 - 5.4790 1.00 2633 153 0.1252 0.1305 REMARK 3 2 5.4790 - 4.3498 1.00 2579 160 0.1254 0.1718 REMARK 3 3 4.3498 - 3.8002 1.00 2662 79 0.1347 0.1941 REMARK 3 4 3.8002 - 3.4529 1.00 2561 159 0.1630 0.2264 REMARK 3 5 3.4529 - 3.2054 1.00 2589 156 0.2037 0.2668 REMARK 3 6 3.2054 - 3.0165 1.00 2633 85 0.2128 0.2774 REMARK 3 7 3.0165 - 2.8654 1.00 2551 163 0.2146 0.2856 REMARK 3 8 2.8654 - 2.7407 1.00 2574 152 0.2291 0.3441 REMARK 3 9 2.7407 - 2.6352 1.00 2620 94 0.2396 0.3308 REMARK 3 10 2.6352 - 2.5443 1.00 2573 169 0.2421 0.2912 REMARK 3 11 2.5443 - 2.4647 1.00 2606 85 0.2622 0.2960 REMARK 3 12 2.4647 - 2.3943 0.98 2518 167 0.2869 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5787 REMARK 3 ANGLE : 1.084 7832 REMARK 3 CHIRALITY : 0.041 860 REMARK 3 PLANARITY : 0.005 1028 REMARK 3 DIHEDRAL : 16.260 2083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6627 -29.7255 -12.7151 REMARK 3 T TENSOR REMARK 3 T11: 0.5734 T22: 0.3778 REMARK 3 T33: 0.5105 T12: 0.0153 REMARK 3 T13: -0.0978 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.4119 L22: 0.8045 REMARK 3 L33: 0.5681 L12: -0.1498 REMARK 3 L13: 0.0217 L23: 0.0979 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: 0.1656 S13: 0.2342 REMARK 3 S21: 0.0350 S22: -0.0346 S23: -0.0289 REMARK 3 S31: -0.4557 S32: 0.0760 S33: -0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5186 -40.7330 -20.8702 REMARK 3 T TENSOR REMARK 3 T11: 0.4480 T22: 0.4880 REMARK 3 T33: 0.4444 T12: -0.0975 REMARK 3 T13: -0.0128 T23: 0.1040 REMARK 3 L TENSOR REMARK 3 L11: 0.5470 L22: 0.3965 REMARK 3 L33: 0.6524 L12: 0.0087 REMARK 3 L13: -0.1560 L23: 0.0356 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.2561 S13: 0.1866 REMARK 3 S21: -0.1377 S22: -0.1184 S23: -0.0684 REMARK 3 S31: -0.1187 S32: 0.2576 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5055 -40.5838 8.4288 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.5093 REMARK 3 T33: 0.4982 T12: 0.1631 REMARK 3 T13: -0.0128 T23: -0.0894 REMARK 3 L TENSOR REMARK 3 L11: 0.6832 L22: 0.3049 REMARK 3 L33: 0.8684 L12: -0.0293 REMARK 3 L13: -0.1676 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: -0.1088 S13: 0.0471 REMARK 3 S21: 0.1839 S22: -0.1144 S23: 0.1250 REMARK 3 S31: -0.2322 S32: -0.4442 S33: -0.0022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0544 -42.0414 25.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.5223 T22: 0.4953 REMARK 3 T33: 0.4547 T12: 0.0860 REMARK 3 T13: -0.0289 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: 0.1634 L22: 0.3507 REMARK 3 L33: 0.6443 L12: 0.0700 REMARK 3 L13: 0.1319 L23: 0.3150 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: -0.1944 S13: 0.0491 REMARK 3 S21: 0.2549 S22: 0.0258 S23: 0.0152 REMARK 3 S31: -0.1955 S32: -0.0913 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 48.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 1.68100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5HJF REMARK 200 REMARK 200 REMARK: ROD SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% SOKALAN HP 66, 0.1M HEPES PH 7.0 REMARK 280 AND 0.2M NAOAC,, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.13500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.13500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.13500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 67590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -789.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.46000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.39928 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.46000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -87.39928 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 312 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 320 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN C 116 ND2 ASN C 120 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 -38.92 -140.24 REMARK 500 TYR A 15 -166.83 -126.93 REMARK 500 ALA A 93 -12.65 -153.61 REMARK 500 ASP A 144 78.30 -101.36 REMARK 500 PHE A 178 5.01 -158.05 REMARK 500 TYR B 15 -162.31 -109.64 REMARK 500 LEU B 176 -9.18 -57.68 REMARK 500 PHE B 178 15.51 -156.24 REMARK 500 LEU C 8 -30.81 -130.53 REMARK 500 ALA C 93 -0.25 -150.98 REMARK 500 PHE C 178 19.14 -154.09 REMARK 500 ALA D 93 -16.08 -148.64 REMARK 500 PHE D 178 6.54 -153.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 51 NE2 REMARK 620 2 HIS B 78 NE2 78.0 REMARK 620 3 GLU B 82 OE2 86.6 67.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 GLU A 82 OE1 95.1 REMARK 620 3 HIS B 51 NE2 84.5 117.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 51 NE2 REMARK 620 2 HIS D 78 NE2 84.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 78 NE2 REMARK 620 2 GLU C 82 OE2 105.5 REMARK 620 3 HIS D 51 NE2 85.2 79.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HJF RELATED DB: PDB REMARK 900 5HJF IS THE APO FORM OF THIS PROTEIN. DBREF 5I4J A 6 182 UNP B2J981 B2J981_NOSP7 6 182 DBREF 5I4J B 6 182 UNP B2J981 B2J981_NOSP7 6 182 DBREF 5I4J C 6 182 UNP B2J981 B2J981_NOSP7 6 182 DBREF 5I4J D 6 182 UNP B2J981 B2J981_NOSP7 6 182 SEQRES 1 A 177 THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN PRO SEQRES 2 A 177 VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR GLU SEQRES 3 A 177 GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU TYR SEQRES 4 A 177 LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SER SEQRES 5 A 177 GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER TYR SEQRES 6 A 177 ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU ARG SEQRES 7 A 177 LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SER SEQRES 8 A 177 LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER GLU SEQRES 9 A 177 GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP LEU SEQRES 10 A 177 ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG GLN SEQRES 11 A 177 ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR ARG SEQRES 12 A 177 TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU ARG SEQRES 13 A 177 ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER LEU SEQRES 14 A 177 THR LEU GLY PHE VAL GLN ALA ALA SEQRES 1 B 177 THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN PRO SEQRES 2 B 177 VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR GLU SEQRES 3 B 177 GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU TYR SEQRES 4 B 177 LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SER SEQRES 5 B 177 GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER TYR SEQRES 6 B 177 ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU ARG SEQRES 7 B 177 LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SER SEQRES 8 B 177 LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER GLU SEQRES 9 B 177 GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP LEU SEQRES 10 B 177 ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG GLN SEQRES 11 B 177 ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR ARG SEQRES 12 B 177 TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU ARG SEQRES 13 B 177 ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER LEU SEQRES 14 B 177 THR LEU GLY PHE VAL GLN ALA ALA SEQRES 1 C 177 THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN PRO SEQRES 2 C 177 VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR GLU SEQRES 3 C 177 GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU TYR SEQRES 4 C 177 LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SER SEQRES 5 C 177 GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER TYR SEQRES 6 C 177 ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU ARG SEQRES 7 C 177 LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SER SEQRES 8 C 177 LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER GLU SEQRES 9 C 177 GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP LEU SEQRES 10 C 177 ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG GLN SEQRES 11 C 177 ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR ARG SEQRES 12 C 177 TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU ARG SEQRES 13 C 177 ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER LEU SEQRES 14 C 177 THR LEU GLY PHE VAL GLN ALA ALA SEQRES 1 D 177 THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN PRO SEQRES 2 D 177 VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR GLU SEQRES 3 D 177 GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU TYR SEQRES 4 D 177 LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SER SEQRES 5 D 177 GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER TYR SEQRES 6 D 177 ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU ARG SEQRES 7 D 177 LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SER SEQRES 8 D 177 LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER GLU SEQRES 9 D 177 GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP LEU SEQRES 10 D 177 ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG GLN SEQRES 11 D 177 ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR ARG SEQRES 12 D 177 TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU ARG SEQRES 13 D 177 ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER LEU SEQRES 14 D 177 THR LEU GLY PHE VAL GLN ALA ALA HET ZN A 201 1 HET EPE A 202 15 HET ZN A 203 1 HET ZN C 201 1 HET ZN C 202 1 HETNAM ZN ZINC ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 ZN 4(ZN 2+) FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 10 HOH *67(H2 O) HELIX 1 AA1 ASP A 22 VAL A 54 1 33 HELIX 2 AA2 GLU A 58 LEU A 87 1 30 HELIX 3 AA3 THR A 94 THR A 102 1 9 HELIX 4 AA4 SER A 113 GLY A 143 1 31 HELIX 5 AA5 ASP A 144 ALA A 170 1 27 HELIX 6 AA6 SER A 173 PHE A 178 5 6 HELIX 7 AA7 ASP B 22 VAL B 54 1 33 HELIX 8 AA8 GLU B 58 LEU B 87 1 30 HELIX 9 AA9 THR B 94 THR B 102 1 9 HELIX 10 AB1 SER B 113 GLY B 143 1 31 HELIX 11 AB2 ASP B 144 ALA B 170 1 27 HELIX 12 AB3 SER B 173 PHE B 178 5 6 HELIX 13 AB4 ASP C 22 VAL C 54 1 33 HELIX 14 AB5 GLU C 58 LEU C 87 1 30 HELIX 15 AB6 THR C 94 THR C 102 1 9 HELIX 16 AB7 SER C 113 LEU C 142 1 30 HELIX 17 AB8 ASP C 144 ALA C 170 1 27 HELIX 18 AB9 SER C 173 PHE C 178 5 6 HELIX 19 AC1 ASP D 22 VAL D 54 1 33 HELIX 20 AC2 GLU D 58 LEU D 87 1 30 HELIX 21 AC3 THR D 94 THR D 102 1 9 HELIX 22 AC4 SER D 113 GLY D 143 1 31 HELIX 23 AC5 ASP D 144 ALA D 170 1 27 HELIX 24 AC6 SER D 173 PHE D 178 5 6 SHEET 1 AA1 2 LEU A 7 ARG A 9 0 SHEET 2 AA1 2 VAL B 111 TYR B 112 -1 O VAL B 111 N LEU A 8 SHEET 1 AA2 2 LEU C 7 ARG C 9 0 SHEET 2 AA2 2 VAL D 111 TYR D 112 -1 O VAL D 111 N ARG C 9 SHEET 1 AA3 2 VAL C 111 TYR C 112 0 SHEET 2 AA3 2 LEU D 7 ARG D 9 -1 O LEU D 8 N VAL C 111 LINK NE2 HIS A 51 ZN ZN A 203 1555 1555 2.40 LINK NE2 HIS A 78 ZN ZN A 201 1555 1555 2.32 LINK OE1 GLU A 82 ZN ZN A 201 1555 1555 2.46 LINK ZN ZN A 201 NE2 HIS B 51 1555 1555 2.42 LINK ZN ZN A 203 NE2 HIS B 78 1555 1555 2.33 LINK ZN ZN A 203 OE2 GLU B 82 1555 1555 2.15 LINK NE2 HIS C 51 ZN ZN C 202 1555 1555 2.43 LINK NE2 HIS C 78 ZN ZN C 201 1555 1555 2.17 LINK OE2 GLU C 82 ZN ZN C 201 1555 1555 2.64 LINK ZN ZN C 201 NE2 HIS D 51 1555 1555 2.45 LINK ZN ZN C 202 NE2 HIS D 78 1555 1555 2.23 SITE 1 AC1 3 HIS A 78 GLU A 82 HIS B 51 SITE 1 AC2 10 ASP A 16 ASN A 17 LEU A 20 LEU A 21 SITE 2 AC2 10 ASP A 22 ARG A 23 PHE D 11 GLY D 12 SITE 3 AC2 10 ASN D 13 GLU D 31 SITE 1 AC3 4 HIS A 51 HIS A 63 HIS B 78 GLU B 82 SITE 1 AC4 4 HIS C 78 GLU C 82 HOH C 306 HIS D 51 SITE 1 AC5 5 HIS C 51 HIS C 63 HIS D 78 GLU D 82 SITE 2 AC5 5 HOH D 310 CRYST1 100.920 100.920 144.270 90.00 90.00 120.00 P 63 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009909 0.005721 0.000000 0.00000 SCALE2 0.000000 0.011442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006931 0.00000