HEADER TRANSFERASE 15-FEB-16 5I5E TITLE CRYSTAL STRUCTURE OF TRANSKETOLASE MUTANTS-H66/261C COMPLEX WITH TITLE 2 XYLULOSE-5-PHOAPHATE FROM PICHIA STIPITIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSKETOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TK; COMPND 5 EC: 2.2.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHEFFERSOMYCES STIPITIS CBS 6054; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 322104; SOURCE 5 STRAIN: CBS 6054; SOURCE 6 GENE: TKT, TKT1, PICST_67105; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSKETOLASE, XYLULOSE-5-PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,L.J.HSU,N.S.HSU REVDAT 3 08-NOV-23 5I5E 1 REMARK REVDAT 2 05-JUL-17 5I5E 1 JRNL REVDAT 1 15-FEB-17 5I5E 0 JRNL AUTH L.J.HSU,N.S.HSU,Y.L.WANG,C.J.WU,T.L.LI JRNL TITL STRUCTURAL AND BIOCHEMICAL INTERROGATION ON TRANSKETOLASE JRNL TITL 2 FROM PICHIA STIPITIS FOR NEW FUNCTIONALITY JRNL REF PROTEIN ENG. DES. SEL. 2016 JRNL REFN ESSN 1741-0134 JRNL PMID 27578891 JRNL DOI 10.1093/PROTEIN/GZW036 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2152: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 113342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.8413 - 5.0079 0.99 3801 199 0.1685 0.1771 REMARK 3 2 5.0079 - 3.9809 0.99 3692 174 0.1293 0.1440 REMARK 3 3 3.9809 - 3.4794 1.00 3667 198 0.1397 0.1478 REMARK 3 4 3.4794 - 3.1621 1.00 3645 201 0.1576 0.1778 REMARK 3 5 3.1621 - 2.9359 0.99 3597 194 0.1604 0.1878 REMARK 3 6 2.9359 - 2.7631 0.99 3639 170 0.1570 0.1848 REMARK 3 7 2.7631 - 2.6249 0.99 3587 195 0.1504 0.1771 REMARK 3 8 2.6249 - 2.5107 0.99 3573 181 0.1571 0.1695 REMARK 3 9 2.5107 - 2.4142 0.99 3558 197 0.1542 0.1678 REMARK 3 10 2.4142 - 2.3309 0.99 3614 187 0.1558 0.1859 REMARK 3 11 2.3309 - 2.2581 0.99 3550 212 0.1588 0.1806 REMARK 3 12 2.2581 - 2.1936 0.99 3605 175 0.1581 0.2021 REMARK 3 13 2.1936 - 2.1359 1.00 3614 172 0.1601 0.1830 REMARK 3 14 2.1359 - 2.0838 1.00 3576 182 0.1647 0.1950 REMARK 3 15 2.0838 - 2.0365 1.00 3585 190 0.1638 0.1930 REMARK 3 16 2.0365 - 1.9932 1.00 3617 168 0.1682 0.1961 REMARK 3 17 1.9932 - 1.9533 1.00 3588 185 0.1707 0.2129 REMARK 3 18 1.9533 - 1.9165 1.00 3584 190 0.1672 0.2244 REMARK 3 19 1.9165 - 1.8823 1.00 3577 198 0.1673 0.1966 REMARK 3 20 1.8823 - 1.8504 1.00 3575 195 0.1668 0.2225 REMARK 3 21 1.8504 - 1.8205 1.00 3565 205 0.1794 0.2163 REMARK 3 22 1.8205 - 1.7925 1.00 3579 187 0.1736 0.2139 REMARK 3 23 1.7925 - 1.7662 1.00 3598 179 0.1825 0.2113 REMARK 3 24 1.7662 - 1.7413 1.00 3605 195 0.1809 0.2373 REMARK 3 25 1.7413 - 1.7178 1.00 3578 182 0.1882 0.2438 REMARK 3 26 1.7178 - 1.6955 1.00 3576 202 0.1960 0.2161 REMARK 3 27 1.6955 - 1.6743 1.00 3551 203 0.1975 0.2452 REMARK 3 28 1.6743 - 1.6541 1.00 3584 197 0.1943 0.2468 REMARK 3 29 1.6541 - 1.6349 1.00 3572 203 0.2062 0.2472 REMARK 3 30 1.6349 - 1.6165 0.89 3204 170 0.2118 0.2323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5314 REMARK 3 ANGLE : 1.204 7226 REMARK 3 CHIRALITY : 0.064 807 REMARK 3 PLANARITY : 0.009 937 REMARK 3 DIHEDRAL : 11.512 3148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1GPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, NACL, PEG400, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.13150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.13150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.94250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.04200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.94250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.04200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.13150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.94250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.04200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.13150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.94250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.04200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.13150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 819 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1066 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1499 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1516 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1562 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 549 O ASP A 550 1.26 REMARK 500 HZ3 LYS A 667 O HOH A 813 1.53 REMARK 500 HZ1 LYS A 53 O HOH A 802 1.54 REMARK 500 HE21 GLN A 318 O HOH A 806 1.56 REMARK 500 HG1 THR A 292 O HOH A 817 1.59 REMARK 500 HH TYR A 320 O HOH A 812 1.59 REMARK 500 O HOH A 1427 O HOH A 1564 1.76 REMARK 500 O HOH A 1459 O HOH A 1501 1.82 REMARK 500 O HOH A 1205 O HOH A 1518 1.87 REMARK 500 O HOH A 809 O HOH A 1374 1.88 REMARK 500 O HOH A 1405 O HOH A 1419 1.94 REMARK 500 O HOH A 1417 O HOH A 1571 1.95 REMARK 500 O HOH A 1346 O HOH A 1398 1.98 REMARK 500 O HOH A 1425 O HOH A 1550 1.99 REMARK 500 O HOH A 1366 O HOH A 1442 2.00 REMARK 500 O11 5SP A 702 O HOH A 801 2.00 REMARK 500 O HOH A 1372 O HOH A 1442 2.02 REMARK 500 O HOH A 1333 O HOH A 1373 2.02 REMARK 500 O HOH A 1348 O HOH A 1556 2.03 REMARK 500 NZ LYS A 53 O HOH A 802 2.04 REMARK 500 O HOH A 1219 O HOH A 1276 2.05 REMARK 500 O HOH A 1413 O HOH A 1436 2.06 REMARK 500 O HOH A 1194 O HOH A 1427 2.06 REMARK 500 OE1 GLU A 301 O HOH A 803 2.08 REMARK 500 O HOH A 1350 O HOH A 1369 2.10 REMARK 500 O HOH A 1286 O HOH A 1457 2.10 REMARK 500 O HOH A 1070 O HOH A 1219 2.10 REMARK 500 O HOH A 1388 O HOH A 1402 2.11 REMARK 500 O HOH A 1258 O HOH A 1366 2.11 REMARK 500 O HOH A 1464 O HOH A 1564 2.12 REMARK 500 O HOH A 1164 O HOH A 1462 2.13 REMARK 500 O HOH A 1307 O HOH A 1381 2.15 REMARK 500 O HOH A 1337 O HOH A 1432 2.15 REMARK 500 O HOH A 1029 O HOH A 1170 2.19 REMARK 500 O HOH A 1119 O HOH A 1379 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1325 O HOH A 1446 8455 2.02 REMARK 500 O HOH A 1291 O HOH A 1359 3555 2.08 REMARK 500 O HOH A 1286 O HOH A 1537 4555 2.10 REMARK 500 NH2 ARG A 451 OE1 GLU A 482 3555 2.12 REMARK 500 O HOH A 1125 O HOH A 1455 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 451 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 451 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 20.39 -74.07 REMARK 500 TYR A 80 171.11 -58.64 REMARK 500 ASP A 146 28.31 -146.25 REMARK 500 ALA A 196 -6.62 -153.35 REMARK 500 ILE A 481 -51.27 -128.40 REMARK 500 ASP A 500 -169.56 -162.52 REMARK 500 VAL A 614 48.37 -80.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1575 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A1576 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A1577 DISTANCE = 9.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD2 REMARK 620 2 ASN A 185 OD1 93.6 REMARK 620 3 ILE A 187 O 98.7 90.3 REMARK 620 4 TPP A 701 O2A 100.3 165.2 92.9 REMARK 620 5 TPP A 701 O2B 171.3 85.7 90.0 79.8 REMARK 620 6 HOH A 998 O 89.2 89.8 172.1 85.0 82.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5SP A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HGX RELATED DB: PDB REMARK 900 RELATED ID: 5HJE RELATED DB: PDB REMARK 900 RELATED ID: 5HYV RELATED DB: PDB REMARK 900 RELATED ID: 5I4I RELATED DB: PDB REMARK 900 RELATED ID: 5I51 RELATED DB: PDB REMARK 900 RELATED ID: 5I5G RELATED DB: PDB DBREF 5I5E A 1 677 UNP P34736 TKT_PICST 1 677 SEQADV 5I5E MET A -19 UNP P34736 EXPRESSION TAG SEQADV 5I5E GLY A -18 UNP P34736 EXPRESSION TAG SEQADV 5I5E SER A -17 UNP P34736 EXPRESSION TAG SEQADV 5I5E SER A -16 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A -15 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A -14 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A -13 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A -12 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A -11 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A -10 UNP P34736 EXPRESSION TAG SEQADV 5I5E SER A -9 UNP P34736 EXPRESSION TAG SEQADV 5I5E SER A -8 UNP P34736 EXPRESSION TAG SEQADV 5I5E GLY A -7 UNP P34736 EXPRESSION TAG SEQADV 5I5E LEU A -6 UNP P34736 EXPRESSION TAG SEQADV 5I5E VAL A -5 UNP P34736 EXPRESSION TAG SEQADV 5I5E PRO A -4 UNP P34736 EXPRESSION TAG SEQADV 5I5E ARG A -3 UNP P34736 EXPRESSION TAG SEQADV 5I5E GLY A -2 UNP P34736 EXPRESSION TAG SEQADV 5I5E SER A -1 UNP P34736 EXPRESSION TAG SEQADV 5I5E HIS A 0 UNP P34736 EXPRESSION TAG SEQADV 5I5E CYS A 66 UNP P34736 HIS 66 ENGINEERED MUTATION SEQADV 5I5E CYS A 261 UNP P34736 HIS 261 ENGINEERED MUTATION SEQRES 1 A 697 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 697 LEU VAL PRO ARG GLY SER HIS MET SER SER VAL ASP GLN SEQRES 3 A 697 LYS ALA ILE SER THR ILE ARG LEU LEU ALA VAL ASP ALA SEQRES 4 A 697 VAL ALA ALA ALA ASN SER GLY HIS PRO GLY ALA PRO LEU SEQRES 5 A 697 GLY LEU ALA PRO ALA ALA HIS ALA VAL PHE LYS LYS MET SEQRES 6 A 697 ARG PHE ASN PRO LYS ASP THR LYS TRP ILE ASN ARG ASP SEQRES 7 A 697 ARG PHE VAL LEU SER ASN GLY CYS ALA CYS ALA LEU LEU SEQRES 8 A 697 TYR SER MET LEU VAL LEU TYR GLY TYR ASP LEU THR VAL SEQRES 9 A 697 GLU ASP LEU LYS LYS PHE ARG GLN LEU GLY SER LYS THR SEQRES 10 A 697 PRO GLY HIS PRO GLU ASN THR ASP VAL PRO GLY ALA GLU SEQRES 11 A 697 VAL THR THR GLY PRO LEU GLY GLN GLY ILE CYS ASN GLY SEQRES 12 A 697 VAL GLY ILE ALA LEU ALA GLN ALA GLN PHE ALA ALA THR SEQRES 13 A 697 TYR ASN LYS PRO ASP PHE PRO ILE SER ASP SER TYR THR SEQRES 14 A 697 TYR VAL PHE LEU GLY ASP GLY CYS LEU MET GLU GLY VAL SEQRES 15 A 697 SER SER GLU ALA SER SER LEU ALA GLY HIS LEU GLN LEU SEQRES 16 A 697 GLY ASN LEU ILE ALA PHE TRP ASP ASP ASN LYS ILE SER SEQRES 17 A 697 ILE ASP GLY SER THR GLU VAL ALA PHE THR GLU ASP VAL SEQRES 18 A 697 ILE ALA ARG TYR LYS SER TYR GLY TRP HIS ILE VAL GLU SEQRES 19 A 697 VAL SER ASP ALA ASP THR ASP ILE THR ALA ILE ALA ALA SEQRES 20 A 697 ALA ILE ASP GLU ALA LYS LYS VAL THR ASN LYS PRO THR SEQRES 21 A 697 LEU VAL ARG LEU THR THR THR ILE GLY PHE GLY SER LEU SEQRES 22 A 697 ALA GLN GLY THR HIS GLY VAL CYS GLY ALA PRO LEU LYS SEQRES 23 A 697 ALA ASP ASP ILE LYS GLN LEU LYS THR LYS TRP GLY PHE SEQRES 24 A 697 ASN PRO GLU GLU SER PHE ALA VAL PRO ALA GLU VAL THR SEQRES 25 A 697 ALA SER TYR ASN GLU HIS VAL ALA GLU ASN GLN LYS ILE SEQRES 26 A 697 GLN GLN GLN TRP ASN GLU LEU PHE ALA ALA TYR LYS GLN SEQRES 27 A 697 LYS TYR PRO GLU LEU GLY ALA GLU LEU GLN ARG ARG LEU SEQRES 28 A 697 ASP GLY LYS LEU PRO GLU ASN TRP ASP LYS ALA LEU PRO SEQRES 29 A 697 VAL TYR THR PRO ALA ASP ALA ALA VAL ALA THR ARG LYS SEQRES 30 A 697 LEU SER GLU ILE VAL LEU SER LYS ILE ILE PRO GLU VAL SEQRES 31 A 697 PRO GLU ILE ILE GLY GLY SER ALA ASP LEU THR PRO SER SEQRES 32 A 697 ASN LEU THR LYS ALA LYS GLY THR VAL ASP PHE GLN PRO SEQRES 33 A 697 ALA ALA THR GLY LEU GLY ASP TYR SER GLY ARG TYR ILE SEQRES 34 A 697 ARG TYR GLY VAL ARG GLU HIS ALA MET GLY ALA ILE MET SEQRES 35 A 697 ASN GLY ILE ALA ALA PHE GLY ALA ASN TYR LYS ASN TYR SEQRES 36 A 697 GLY GLY THR PHE LEU ASN PHE VAL SER TYR ALA ALA GLY SEQRES 37 A 697 ALA VAL ARG LEU SER ALA LEU SER GLU PHE PRO ILE THR SEQRES 38 A 697 TRP VAL ALA THR HIS ASP SER ILE GLY LEU GLY GLU ASP SEQRES 39 A 697 GLY PRO THR HIS GLN PRO ILE GLU THR LEU ALA HIS PHE SEQRES 40 A 697 ARG ALA THR PRO ASN ILE SER VAL TRP ARG PRO ALA ASP SEQRES 41 A 697 GLY ASN GLU THR SER ALA ALA TYR LYS SER ALA ILE GLU SEQRES 42 A 697 SER THR HIS THR PRO HIS ILE LEU ALA LEU THR ARG GLN SEQRES 43 A 697 ASN LEU PRO GLN LEU GLU GLY SER SER ILE GLU LYS ALA SEQRES 44 A 697 SER LYS GLY GLY TYR THR LEU VAL GLN GLN ASP LYS ALA SEQRES 45 A 697 ASP ILE ILE ILE VAL ALA THR GLY SER GLU VAL SER LEU SEQRES 46 A 697 ALA VAL ASP ALA LEU LYS VAL LEU GLU GLY GLN GLY ILE SEQRES 47 A 697 LYS ALA GLY VAL VAL SER LEU PRO ASP GLN LEU THR PHE SEQRES 48 A 697 ASP LYS GLN SER GLU GLU TYR LYS LEU SER VAL LEU PRO SEQRES 49 A 697 ASP GLY VAL PRO ILE LEU SER VAL GLU VAL MET SER THR SEQRES 50 A 697 PHE GLY TRP SER LYS TYR SER HIS GLN GLN PHE GLY LEU SEQRES 51 A 697 ASN ARG PHE GLY ALA SER GLY LYS ALA PRO GLU ILE PHE SEQRES 52 A 697 LYS LEU PHE GLU PHE THR PRO GLU GLY VAL ALA GLU ARG SEQRES 53 A 697 ALA ALA LYS THR VAL ALA PHE TYR LYS GLY LYS ASP VAL SEQRES 54 A 697 VAL SER PRO LEU ARG SER ALA PHE HET TPP A 701 42 HET 5SP A 702 23 HET CA A 703 1 HETNAM TPP THIAMINE DIPHOSPHATE HETNAM 5SP 5-O-PHOSPHONO-D-XYLULOSE HETNAM CA CALCIUM ION HETSYN 5SP D-XYLULOSE 5-PHOSPHATE FORMUL 2 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 3 5SP C5 H11 O8 P FORMUL 4 CA CA 2+ FORMUL 5 HOH *777(H2 O) HELIX 1 AA1 SER A 2 ASN A 24 1 23 HELIX 2 AA2 PRO A 28 MET A 45 1 18 HELIX 3 AA3 ASN A 64 CYS A 66 5 3 HELIX 4 AA4 ALA A 67 TYR A 78 1 12 HELIX 5 AA5 THR A 83 LYS A 88 1 6 HELIX 6 AA6 GLY A 117 ASN A 138 1 22 HELIX 7 AA7 GLY A 154 GLU A 160 1 7 HELIX 8 AA8 GLU A 160 LEU A 173 1 14 HELIX 9 AA9 GLU A 194 ALA A 196 5 3 HELIX 10 AB1 ASP A 200 TYR A 208 1 9 HELIX 11 AB2 ASP A 221 VAL A 235 1 15 HELIX 12 AB3 THR A 257 CYS A 261 5 5 HELIX 13 AB4 LYS A 266 GLY A 278 1 13 HELIX 14 AB5 PRO A 288 TYR A 320 1 33 HELIX 15 AB6 TYR A 320 ASP A 332 1 13 HELIX 16 AB7 ASN A 338 LEU A 343 5 6 HELIX 17 AB8 THR A 355 ILE A 367 1 13 HELIX 18 AB9 LEU A 380 LEU A 385 1 6 HELIX 19 AC1 PRO A 396 GLY A 400 5 5 HELIX 20 AC2 ARG A 414 GLY A 429 1 16 HELIX 21 AC3 LEU A 440 SER A 444 1 5 HELIX 22 AC4 ALA A 446 GLU A 457 1 12 HELIX 23 AC5 SER A 468 GLY A 472 5 5 HELIX 24 AC6 GLU A 482 ALA A 489 1 8 HELIX 25 AC7 ASP A 500 SER A 514 1 15 HELIX 26 AC8 SER A 535 SER A 540 1 6 HELIX 27 AC9 GLY A 560 GLN A 576 1 17 HELIX 28 AD1 ASP A 587 LYS A 593 1 7 HELIX 29 AD2 SER A 595 LEU A 603 1 9 HELIX 30 AD3 GLY A 619 TYR A 623 5 5 HELIX 31 AD4 LYS A 638 PHE A 646 1 9 HELIX 32 AD5 THR A 649 TYR A 664 1 16 SHEET 1 AA1 5 ARG A 59 LEU A 62 0 SHEET 2 AA1 5 THR A 149 LEU A 153 1 O TYR A 150 N ARG A 59 SHEET 3 AA1 5 LEU A 178 ASP A 184 1 O ILE A 179 N THR A 149 SHEET 4 AA1 5 THR A 240 THR A 245 1 O VAL A 242 N ALA A 180 SHEET 5 AA1 5 HIS A 211 VAL A 215 1 N VAL A 215 O ARG A 243 SHEET 1 AA2 2 ILE A 187 SER A 188 0 SHEET 2 AA2 2 GLY A 191 SER A 192 -1 O GLY A 191 N SER A 188 SHEET 1 AA3 2 VAL A 353 ALA A 354 0 SHEET 2 AA3 2 ASN A 527 LEU A 528 -1 O LEU A 528 N VAL A 353 SHEET 1 AA4 6 TYR A 408 ARG A 410 0 SHEET 2 AA4 6 ILE A 373 SER A 377 1 N GLY A 375 O ILE A 409 SHEET 3 AA4 6 LYS A 433 PHE A 439 1 O GLY A 437 N GLY A 376 SHEET 4 AA4 6 THR A 461 THR A 465 1 O VAL A 463 N GLY A 436 SHEET 5 AA4 6 HIS A 519 ALA A 522 1 O LEU A 521 N TRP A 462 SHEET 6 AA4 6 SER A 494 TRP A 496 1 N TRP A 496 O ALA A 522 SHEET 1 AA5 5 TYR A 544 VAL A 547 0 SHEET 2 AA5 5 ALA A 580 SER A 584 -1 O SER A 584 N TYR A 544 SHEET 3 AA5 5 ILE A 554 ALA A 558 1 N ILE A 556 O GLY A 581 SHEET 4 AA5 5 ILE A 609 VAL A 612 1 O LEU A 610 N ILE A 555 SHEET 5 AA5 5 GLN A 626 PHE A 628 1 O PHE A 628 N SER A 611 LINK OD2 ASP A 155 CA CA A 703 1555 1555 2.31 LINK OD1 ASN A 185 CA CA A 703 1555 1555 2.30 LINK O ILE A 187 CA CA A 703 1555 1555 2.21 LINK O2A TPP A 701 CA CA A 703 1555 1555 2.17 LINK O2B TPP A 701 CA CA A 703 1555 1555 2.42 LINK CA CA A 703 O HOH A 998 1555 1555 2.36 SITE 1 AC1 25 ALA A 30 CYS A 66 GLY A 114 PRO A 115 SITE 2 AC1 25 LEU A 116 ASP A 155 GLY A 156 GLU A 160 SITE 3 AC1 25 ASN A 185 ILE A 187 SER A 188 ILE A 189 SITE 4 AC1 25 ILE A 248 CYS A 261 ASP A 379 GLU A 415 SITE 5 AC1 25 PHE A 442 TYR A 445 HIS A 478 5SP A 702 SITE 6 AC1 25 CA A 703 HOH A 843 HOH A 998 HOH A1043 SITE 7 AC1 25 HOH A1234 SITE 1 AC2 14 HIS A 27 CYS A 66 HIS A 100 ILE A 189 SITE 2 AC2 14 ARG A 356 SER A 383 PHE A 439 HIS A 466 SITE 3 AC2 14 ASP A 474 HIS A 478 ARG A 525 TPP A 701 SITE 4 AC2 14 HOH A 801 HOH A1142 SITE 1 AC3 5 ASP A 155 ASN A 185 ILE A 187 TPP A 701 SITE 2 AC3 5 HOH A 998 CRYST1 99.885 182.084 98.263 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010012 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010177 0.00000