HEADER SIGNALING PROTEIN 15-FEB-16 5I5L TITLE THE PHOTOSENSORY MODULE (PAS-GAF-PHY) OF THE BACTERIAL PHYTOCHROME TITLE 2 AGP1 (ATBPHP1) IN THE PR FORM, CHROMOPHORE MODELLED WITH AN TITLE 3 ENDOCYCLIC DOUBLE BOND IN PYRROLE RING A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE RESIDUE NUMBERING IN THE PDB ENTRY DIFFERS FROM COMPND 6 THE ONE SHOWN IN THIS SEQUENCE ALIGNMENT. THE FIRST RESIDUE IN THE COMPND 7 PDB ENTRY IS 'LEU17' IN ACCORDANCE WITH THE SEQUENCE FOR THE ENTRY COMPND 8 AAT99575 (NCBI). THE RESPECTIVE NUMBERING WAS USED IN A NUMBER OF COMPND 9 PUBLICATIONS ON THIS PROTEIN, AND WE DID NOT CHANGE IT IN THIS ENTRY COMPND 10 FOR THE SAKE OF CONSISTENCY WITH PUBLISHED WORK AND BECAUSE THE TRUE COMPND 11 N-TERMINUS HAS NOT YET BEEN IDENTIFIED AT THE PROTEIN LEVEL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: ATU1990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SIGNALING PROTEIN, BILIN PROTEIN, PHOTOISOMERIZATION, PARALLEL DIMER EXPDTA X-RAY DIFFRACTION AUTHOR S.NAGANO,P.SCHEERER,K.ZUBOW,T.LAMPARTER,N.KRAUSS REVDAT 7 13-NOV-24 5I5L 1 REMARK REVDAT 6 10-JAN-24 5I5L 1 REMARK REVDAT 5 23-JUN-21 5I5L 1 SPRSDE LINK REVDAT 4 06-SEP-17 5I5L 1 REMARK REVDAT 3 05-OCT-16 5I5L 1 JRNL REVDAT 2 10-AUG-16 5I5L 1 JRNL REVDAT 1 03-AUG-16 5I5L 0 SPRSDE 23-JUN-21 5I5L 4WKK JRNL AUTH S.NAGANO,P.SCHEERER,K.ZUBOW,N.MICHAEL,K.INOMATA,T.LAMPARTER, JRNL AUTH 2 N.KRAU JRNL TITL THE CRYSTAL STRUCTURES OF THE N-TERMINAL PHOTOSENSORY CORE JRNL TITL 2 MODULE OF AGROBACTERIUM PHYTOCHROME AGP1 AS PARALLEL AND JRNL TITL 3 ANTI-PARALLEL DIMERS. JRNL REF J.BIOL.CHEM. V. 291 20674 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27466363 JRNL DOI 10.1074/JBC.M116.739136 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 15275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 893 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.37000 REMARK 3 B22 (A**2) : 3.37000 REMARK 3 B33 (A**2) : -6.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.363 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3697 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3403 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5040 ; 1.447 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7776 ; 0.942 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 5.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.991 ;23.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;15.251 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4273 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 839 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 1.432 ; 5.257 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1916 ; 1.432 ; 5.253 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2391 ; 2.471 ; 7.875 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2392 ; 2.471 ; 7.878 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1779 ; 1.441 ; 5.317 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1779 ; 1.440 ; 5.316 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2650 ; 2.368 ; 7.925 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4083 ; 4.544 ;62.015 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4080 ; 4.522 ;62.003 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9870 -46.7270 -38.6480 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1096 REMARK 3 T33: 0.1923 T12: 0.1021 REMARK 3 T13: 0.0685 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.7669 L22: 3.5616 REMARK 3 L33: 5.1103 L12: -1.1140 REMARK 3 L13: -0.2371 L23: 0.2363 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: 0.0629 S13: -0.2222 REMARK 3 S21: -0.0602 S22: 0.1116 S23: -0.1545 REMARK 3 S31: 0.5184 S32: 0.2159 S33: -0.0486 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1120 -33.9080 -19.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.1383 REMARK 3 T33: 0.2643 T12: 0.0161 REMARK 3 T13: 0.0527 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 2.0667 L22: 3.1696 REMARK 3 L33: 1.3442 L12: -1.7924 REMARK 3 L13: -1.3546 L23: 1.9942 REMARK 3 S TENSOR REMARK 3 S11: -0.3548 S12: -0.1182 S13: -0.2708 REMARK 3 S21: 0.5836 S22: 0.0134 S23: 0.4155 REMARK 3 S31: 0.3604 S32: 0.0833 S33: 0.3413 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -47.8880 -8.1660 -11.4920 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.0684 REMARK 3 T33: 0.3555 T12: -0.0568 REMARK 3 T13: -0.0241 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 5.6482 L22: 2.9533 REMARK 3 L33: 1.8968 L12: -3.5996 REMARK 3 L13: -2.3462 L23: 2.2073 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: 0.3106 S13: 0.1567 REMARK 3 S21: 0.1248 S22: -0.2155 S23: 0.1754 REMARK 3 S31: -0.0254 S32: -0.1012 S33: 0.3058 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4570 -26.1870 -21.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.2004 REMARK 3 T33: 0.4732 T12: 0.0345 REMARK 3 T13: -0.1186 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 7.7127 L22: 2.6365 REMARK 3 L33: 1.7263 L12: -3.0271 REMARK 3 L13: -3.2687 L23: 0.5810 REMARK 3 S TENSOR REMARK 3 S11: 0.2638 S12: -0.0991 S13: -0.4760 REMARK 3 S21: -0.1224 S22: -0.4056 S23: 0.3398 REMARK 3 S31: -0.1089 S32: 0.2518 S33: 0.1418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5I5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : SI(1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HSQ REMARK 200 REMARK 200 REMARK: TETRAGONAL COLUMN REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.2 M CACL2, 0.1 M REMARK 280 TRIS/HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 86.50950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.41150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 86.50950 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 39.41150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 86.50950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 39.41150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 86.50950 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.41150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.50950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.41150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.50950 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 39.41150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 86.50950 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 39.41150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 86.50950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 86.50950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.41150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.82300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 THR A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 LEU A 17 REMARK 465 ASP A 18 REMARK 465 LEU A 427 REMARK 465 HIS A 428 REMARK 465 SER A 456 REMARK 465 GLY A 457 REMARK 465 GLU A 503 REMARK 465 GLU A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 19 OG REMARK 470 ILE A 58 CG1 CG2 CD1 REMARK 470 VAL A 60 CG1 CG2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 98 CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 VAL A 119 CG1 CG2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LEU A 126 CD1 CD2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LEU A 130 CG CD1 CD2 REMARK 470 SER A 132 OG REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LEU A 137 CD1 CD2 REMARK 470 GLU A 293 CD OE1 OE2 REMARK 470 LEU A 329 CG CD1 CD2 REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LEU A 365 CG CD1 CD2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 ARG A 423 NE CZ NH1 NH2 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 LYS A 441 CD CE NZ REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 GLN A 454 CD OE1 NE2 REMARK 470 ARG A 458 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 459 CG1 CG2 CD1 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 ILE A 495 CG1 CG2 CD1 REMARK 470 LEU A 499 CG CD1 CD2 REMARK 470 ARG A 500 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 501 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 62 84.53 65.36 REMARK 500 ASP A 218 30.75 -97.69 REMARK 500 TRP A 338 -51.87 66.64 REMARK 500 LEU A 343 77.12 -155.19 REMARK 500 ASP A 395 -69.74 -128.25 REMARK 500 VAL A 424 -42.19 -136.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 PHE A 168 O 70.6 REMARK 620 3 HOH A 707 O 72.6 71.9 REMARK 620 4 HOH A 714 O 83.9 151.5 112.9 REMARK 620 5 HOH A 719 O 87.4 84.5 152.9 82.0 REMARK 620 6 HOH A 721 O 147.8 83.5 81.6 124.6 109.2 REMARK 620 7 HOH A 723 O 125.0 140.0 78.6 65.7 128.5 65.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BLA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAM A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 DBREF 5I5L A 10 504 UNP Q7CY45 Q7CY45_AGRFC 1 495 SEQADV 5I5L HIS A 505 UNP Q7CY45 EXPRESSION TAG SEQADV 5I5L HIS A 506 UNP Q7CY45 EXPRESSION TAG SEQADV 5I5L HIS A 507 UNP Q7CY45 EXPRESSION TAG SEQADV 5I5L HIS A 508 UNP Q7CY45 EXPRESSION TAG SEQADV 5I5L HIS A 509 UNP Q7CY45 EXPRESSION TAG SEQADV 5I5L HIS A 510 UNP Q7CY45 EXPRESSION TAG SEQRES 1 A 501 MET SER SER HIS THR PRO LYS LEU ASP SER CYS GLY ALA SEQRES 2 A 501 GLU PRO ILE HIS ILE PRO GLY ALA ILE GLN GLU HIS GLY SEQRES 3 A 501 ALA LEU LEU VAL LEU SER ALA ARG GLU PHE SER VAL VAL SEQRES 4 A 501 GLN ALA SER ASP ASN LEU ALA ASN TYR ILE GLY VAL ASP SEQRES 5 A 501 LEU PRO ILE GLY ALA VAL ALA THR GLU ALA ASN LEU PRO SEQRES 6 A 501 PHE ILE SER VAL LEU SER ALA TRP TYR SER GLY GLU GLU SEQRES 7 A 501 SER ASN PHE ARG TYR ALA TRP ALA GLU LYS LYS LEU ASP SEQRES 8 A 501 VAL SER ALA HIS ARG SER GLY THR LEU VAL ILE LEU GLU SEQRES 9 A 501 VAL GLU LYS ALA GLY VAL GLY GLU SER ALA GLU LYS LEU SEQRES 10 A 501 MET GLY GLU LEU THR SER LEU ALA LYS TYR LEU ASN SER SEQRES 11 A 501 ALA PRO SER LEU GLU ASP ALA LEU PHE ARG THR ALA GLN SEQRES 12 A 501 LEU VAL SER SER ILE SER GLY HIS ASP ARG THR LEU ILE SEQRES 13 A 501 TYR ASP PHE GLY LEU ASP TRP SER GLY HIS VAL VAL ALA SEQRES 14 A 501 GLU ALA GLY SER GLY ALA LEU PRO SER TYR LEU GLY LEU SEQRES 15 A 501 ARG PHE PRO ALA GLY ASP ILE PRO PRO GLN ALA ARG GLN SEQRES 16 A 501 LEU TYR THR ILE ASN ARG LEU ARG MET ILE PRO ASP VAL SEQRES 17 A 501 ASP TYR LYS PRO VAL PRO ILE ARG PRO GLU VAL ASN ALA SEQRES 18 A 501 GLU THR GLY ALA VAL LEU ASP MET SER PHE SER GLN LEU SEQRES 19 A 501 ARG SER VAL SER PRO VAL HIS LEU GLU TYR MET ARG ASN SEQRES 20 A 501 MET GLY THR ALA ALA SER MET SER VAL SER ILE VAL VAL SEQRES 21 A 501 ASN GLY ALA LEU TRP GLY LEU ILE ALA CYS HIS HIS ALA SEQRES 22 A 501 THR PRO HIS SER VAL SER LEU ALA VAL ARG GLU ALA CYS SEQRES 23 A 501 ASP PHE ALA ALA GLN LEU LEU SER MET ARG ILE ALA MET SEQRES 24 A 501 GLU GLN SER SER GLN ASP ALA SER ARG ARG VAL GLU LEU SEQRES 25 A 501 GLY HIS ILE GLN ALA ARG LEU LEU LYS GLY MET ALA ALA SEQRES 26 A 501 ALA GLU LYS TRP VAL ASP GLY LEU LEU GLY GLY GLU GLY SEQRES 27 A 501 GLU ARG GLU ASP LEU LEU LYS GLN VAL GLY ALA ASP GLY SEQRES 28 A 501 ALA ALA LEU VAL LEU GLY ASP ASP TYR GLU LEU VAL GLY SEQRES 29 A 501 ASN THR PRO SER ARG GLU GLN VAL GLU GLU LEU ILE LEU SEQRES 30 A 501 TRP LEU GLY GLU ARG GLU ILE ALA ASP VAL PHE ALA THR SEQRES 31 A 501 ASP ASN LEU ALA GLY ASN TYR PRO THR ALA ALA ALA TYR SEQRES 32 A 501 ALA SER VAL ALA SER GLY ILE ILE ALA MET ARG VAL SER SEQRES 33 A 501 GLU LEU HIS GLY SER TRP LEU ILE TRP PHE ARG PRO GLU SEQRES 34 A 501 VAL ILE LYS THR VAL ARG TRP GLY GLY ASP PRO HIS LYS SEQRES 35 A 501 THR VAL GLN GLU SER GLY ARG ILE HIS PRO ARG LYS SER SEQRES 36 A 501 PHE GLU ILE TRP LYS GLU GLN LEU ARG ASN THR SER PHE SEQRES 37 A 501 PRO TRP SER GLU PRO GLU LEU ALA ALA ALA ARG GLU LEU SEQRES 38 A 501 ARG GLY ALA ILE ILE GLY ILE VAL LEU ARG LYS THR GLU SEQRES 39 A 501 GLU HIS HIS HIS HIS HIS HIS HET BLA A 601 43 HET CA A 602 1 HET TAM A 603 11 HET GOL A 604 6 HETNAM BLA BILIVERDINE IX ALPHA HETNAM CA CALCIUM ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BLA C33 H34 N4 O6 FORMUL 3 CA CA 2+ FORMUL 4 TAM C7 H17 N O3 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *23(H2 O) HELIX 1 AA1 SER A 19 GLU A 23 5 5 HELIX 2 AA2 ASN A 53 GLY A 59 1 7 HELIX 3 AA3 PHE A 75 GLY A 85 1 11 HELIX 4 AA4 SER A 122 SER A 139 1 18 HELIX 5 AA5 SER A 142 GLY A 159 1 18 HELIX 6 AA6 PRO A 194 ILE A 198 5 5 HELIX 7 AA7 PRO A 199 ASN A 209 1 11 HELIX 8 AA8 SER A 247 GLY A 258 1 12 HELIX 9 AA9 SER A 288 ALA A 335 1 48 HELIX 10 AB1 TRP A 338 GLY A 344 1 7 HELIX 11 AB2 GLY A 345 GLN A 355 1 11 HELIX 12 AB3 SER A 377 ARG A 391 1 15 HELIX 13 AB4 ASN A 401 TYR A 406 1 6 HELIX 14 AB5 PRO A 407 ALA A 411 5 5 HELIX 15 AB6 TYR A 412 SER A 417 1 6 HELIX 16 AB7 SER A 480 THR A 502 1 23 SHEET 1 AA1 7 ALA A 30 ILE A 31 0 SHEET 2 AA1 7 VAL A 222 ARG A 225 -1 O VAL A 222 N ILE A 31 SHEET 3 AA1 7 SER A 46 SER A 51 -1 N ALA A 50 O ARG A 225 SHEET 4 AA1 7 GLY A 35 SER A 41 -1 N VAL A 39 O GLN A 49 SHEET 5 AA1 7 LEU A 109 LYS A 116 -1 O VAL A 110 N LEU A 40 SHEET 6 AA1 7 LEU A 99 SER A 106 -1 N ASP A 100 O GLU A 115 SHEET 7 AA1 7 ASN A 89 TRP A 94 -1 N TRP A 94 O LEU A 99 SHEET 1 AA2 6 ARG A 192 PHE A 193 0 SHEET 2 AA2 6 GLY A 174 GLY A 181 -1 N GLY A 174 O PHE A 193 SHEET 3 AA2 6 ARG A 162 PHE A 168 -1 N THR A 163 O ALA A 180 SHEET 4 AA2 6 ALA A 272 HIS A 281 -1 O ALA A 278 N LEU A 164 SHEET 5 AA2 6 ALA A 261 VAL A 269 -1 N MET A 263 O CYS A 279 SHEET 6 AA2 6 LEU A 211 ILE A 214 -1 N ILE A 214 O SER A 262 SHEET 1 AA3 5 ASP A 368 GLY A 373 0 SHEET 2 AA3 5 GLY A 360 LEU A 365 -1 N ALA A 361 O VAL A 372 SHEET 3 AA3 5 TRP A 431 ARG A 436 -1 O TRP A 431 N VAL A 364 SHEET 4 AA3 5 GLY A 418 ARG A 423 -1 N ILE A 420 O TRP A 434 SHEET 5 AA3 5 VAL A 396 THR A 399 -1 N PHE A 397 O ALA A 421 SHEET 1 AA4 2 LYS A 441 GLY A 446 0 SHEET 2 AA4 2 ILE A 467 LEU A 472 -1 O LEU A 472 N LYS A 441 LINK SG CYS A 20 CBC BLA A 601 1555 1555 1.82 LINK OD1 ASP A 167 CA CA A 602 1555 1555 2.42 LINK O PHE A 168 CA CA A 602 1555 1555 2.35 LINK CA CA A 602 O HOH A 707 1555 1555 2.26 LINK CA CA A 602 O HOH A 714 1555 1555 2.54 LINK CA CA A 602 O HOH A 719 1555 1555 2.26 LINK CA CA A 602 O HOH A 721 1555 1555 2.41 LINK CA CA A 602 O HOH A 723 1555 1555 2.57 CISPEP 1 ARG A 225 PRO A 226 0 -10.99 SITE 1 AC1 17 CYS A 20 PHE A 193 GLY A 196 ASP A 197 SITE 2 AC1 17 ILE A 198 PRO A 199 TYR A 206 ARG A 244 SITE 3 AC1 17 VAL A 246 SER A 247 VAL A 249 HIS A 250 SITE 4 AC1 17 TYR A 253 SER A 262 SER A 264 HIS A 280 SITE 5 AC1 17 HOH A 706 SITE 1 AC2 7 ASP A 167 PHE A 168 HOH A 707 HOH A 714 SITE 2 AC2 7 HOH A 719 HOH A 721 HOH A 723 SITE 1 AC3 3 GLY A 322 GLN A 325 GLU A 489 SITE 1 AC4 7 ASP A 161 ARG A 162 GLU A 179 GLY A 183 SITE 2 AC4 7 LEU A 185 PRO A 186 SER A 187 CRYST1 173.019 173.019 78.823 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012687 0.00000