HEADER TRANSFERASE 15-FEB-16 5I5U TITLE X-RAY CRYSTAL STRUCTURE AT 2.40A RESOLUTION OF HUMAN MITOCHONDRIAL TITLE 2 BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A TITLE 3 TETRAHYDRONAPHTHALENYL COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP TITLE 4 COFACTOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCAT(M),PLACENTAL PROTEIN 18,PP18; COMPND 5 EC: 2.6.1.42; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCAT2, BCATM, BCT2, ECA40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS FOLD TYPE IV, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.O.SOMERS REVDAT 3 01-MAY-24 5I5U 1 REMARK REVDAT 2 06-APR-16 5I5U 1 JRNL REVDAT 1 23-MAR-16 5I5U 0 JRNL AUTH J.A.BORTHWICK,N.ANCELLIN,S.M.BERTRAND,R.P.BINGHAM, JRNL AUTH 2 P.S.CARTER,C.W.CHUNG,I.CHURCHER,N.DODIC,C.FOURNIER, JRNL AUTH 3 P.L.FRANCIS,A.HOBBS,C.JAMIESON,S.D.PICKETT,S.E.SMITH, JRNL AUTH 4 D.O.SOMERS,C.SPITZFADEN,C.J.SUCKLING,R.J.YOUNG JRNL TITL STRUCTURALLY DIVERSE MITOCHONDRIAL BRANCHED CHAIN JRNL TITL 2 AMINOTRANSFERASE (BCATM) LEADS WITH VARYING BINDING MODES JRNL TITL 3 IDENTIFIED BY FRAGMENT SCREENING. JRNL REF J.MED.CHEM. V. 59 2452 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26938474 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01607 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1579 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5775 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 518 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.01000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.509 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6036 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8180 ; 1.463 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13390 ; 0.748 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 724 ; 4.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;33.667 ;23.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1024 ;12.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;13.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 882 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6726 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1385 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2899 ; 2.900 ; 4.484 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2898 ; 2.895 ; 4.483 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3622 ; 4.547 ; 7.551 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5I5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31398 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.404 REMARK 200 RESOLUTION RANGE LOW (A) : 107.462 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: IN-HOUSE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MDL MORPHEUS SCREEN CONDITION B2, DTT, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.53700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.73100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.99750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.73100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.53700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.99750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 PRO B 175 REMARK 465 GLY B 176 REMARK 465 GLY B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 654 O HOH A 712 2.10 REMARK 500 O HOH B 654 O HOH B 739 2.11 REMARK 500 OH TYR B 207 O3 PLP B 401 2.17 REMARK 500 OH TYR A 207 O3 PLP A 401 2.18 REMARK 500 O HOH B 566 O HOH B 627 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 -158.54 -161.14 REMARK 500 GLN A 86 0.76 80.42 REMARK 500 ASP A 128 30.64 -97.46 REMARK 500 ASN A 149 41.10 -149.42 REMARK 500 SER A 178 -18.29 71.76 REMARK 500 HIS A 233 68.96 39.74 REMARK 500 THR A 236 -60.51 -95.96 REMARK 500 GLN A 316 -79.36 81.84 REMARK 500 GLN A 316 -79.36 85.22 REMARK 500 LYS A 326 -89.44 60.64 REMARK 500 PRO A 333 33.51 -79.00 REMARK 500 LEU B 10 151.86 -49.50 REMARK 500 LYS B 21 157.38 -49.06 REMARK 500 LYS B 46 33.30 -97.95 REMARK 500 ASP B 85 23.99 -67.84 REMARK 500 GLN B 86 9.96 53.24 REMARK 500 ASN B 149 46.25 -145.05 REMARK 500 PRO B 151 48.91 -90.35 REMARK 500 GLN B 316 -82.63 64.74 REMARK 500 ASP B 327 -2.51 64.43 REMARK 500 PRO B 333 27.39 -77.15 REMARK 500 ASN B 337 30.67 -91.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 67Y A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 67Y B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 401 and LYS B REMARK 800 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I5S RELATED DB: PDB REMARK 900 RELATED ID: 5I5T RELATED DB: PDB REMARK 900 RELATED ID: 5I5V RELATED DB: PDB REMARK 900 RELATED ID: 5I5W RELATED DB: PDB REMARK 900 RELATED ID: 5I5X RELATED DB: PDB REMARK 900 RELATED ID: 5I5Y RELATED DB: PDB REMARK 900 RELATED ID: 5I60 RELATED DB: PDB DBREF 5I5U A 1 365 UNP O15382 BCAT2_HUMAN 28 392 DBREF 5I5U B 1 365 UNP O15382 BCAT2_HUMAN 28 392 SEQADV 5I5U GLY A -3 UNP O15382 EXPRESSION TAG SEQADV 5I5U SER A -2 UNP O15382 EXPRESSION TAG SEQADV 5I5U HIS A -1 UNP O15382 EXPRESSION TAG SEQADV 5I5U MET A 0 UNP O15382 EXPRESSION TAG SEQADV 5I5U GLY B -3 UNP O15382 EXPRESSION TAG SEQADV 5I5U SER B -2 UNP O15382 EXPRESSION TAG SEQADV 5I5U HIS B -1 UNP O15382 EXPRESSION TAG SEQADV 5I5U MET B 0 UNP O15382 EXPRESSION TAG SEQRES 1 A 369 GLY SER HIS MET ALA SER SER SER PHE LYS ALA ALA ASP SEQRES 2 A 369 LEU GLN LEU GLU MET THR GLN LYS PRO HIS LYS LYS PRO SEQRES 3 A 369 GLY PRO GLY GLU PRO LEU VAL PHE GLY LYS THR PHE THR SEQRES 4 A 369 ASP HIS MET LEU MET VAL GLU TRP ASN ASP LYS GLY TRP SEQRES 5 A 369 GLY GLN PRO ARG ILE GLN PRO PHE GLN ASN LEU THR LEU SEQRES 6 A 369 HIS PRO ALA SER SER SER LEU HIS TYR SER LEU GLN LEU SEQRES 7 A 369 PHE GLU GLY MET LYS ALA PHE LYS GLY LYS ASP GLN GLN SEQRES 8 A 369 VAL ARG LEU PHE ARG PRO TRP LEU ASN MET ASP ARG MET SEQRES 9 A 369 LEU ARG SER ALA MET ARG LEU CYS LEU PRO SER PHE ASP SEQRES 10 A 369 LYS LEU GLU LEU LEU GLU CYS ILE ARG ARG LEU ILE GLU SEQRES 11 A 369 VAL ASP LYS ASP TRP VAL PRO ASP ALA ALA GLY THR SER SEQRES 12 A 369 LEU TYR VAL ARG PRO VAL LEU ILE GLY ASN GLU PRO SER SEQRES 13 A 369 LEU GLY VAL SER GLN PRO THR ARG ALA LEU LEU PHE VAL SEQRES 14 A 369 ILE LEU CYS PRO VAL GLY ALA TYR PHE PRO GLY GLY SER SEQRES 15 A 369 VAL THR PRO VAL SER LEU LEU ALA ASP PRO ALA PHE ILE SEQRES 16 A 369 ARG ALA TRP VAL GLY GLY VAL GLY ASN TYR LYS LEU GLY SEQRES 17 A 369 GLY ASN TYR GLY PRO THR VAL LEU VAL GLN GLN GLU ALA SEQRES 18 A 369 LEU LYS ARG GLY CYS GLU GLN VAL LEU TRP LEU TYR GLY SEQRES 19 A 369 PRO ASP HIS GLN LEU THR GLU VAL GLY THR MET ASN ILE SEQRES 20 A 369 PHE VAL TYR TRP THR HIS GLU ASP GLY VAL LEU GLU LEU SEQRES 21 A 369 VAL THR PRO PRO LEU ASN GLY VAL ILE LEU PRO GLY VAL SEQRES 22 A 369 VAL ARG GLN SER LEU LEU ASP MET ALA GLN THR TRP GLY SEQRES 23 A 369 GLU PHE ARG VAL VAL GLU ARG THR ILE THR MET LYS GLN SEQRES 24 A 369 LEU LEU ARG ALA LEU GLU GLU GLY ARG VAL ARG GLU VAL SEQRES 25 A 369 PHE GLY SER GLY THR ALA CYS GLN VAL CYS PRO VAL HIS SEQRES 26 A 369 ARG ILE LEU TYR LYS ASP ARG ASN LEU HIS ILE PRO THR SEQRES 27 A 369 MET GLU ASN GLY PRO GLU LEU ILE LEU ARG PHE GLN LYS SEQRES 28 A 369 GLU LEU LYS GLU ILE GLN TYR GLY ILE ARG ALA HIS GLU SEQRES 29 A 369 TRP MET PHE PRO VAL SEQRES 1 B 369 GLY SER HIS MET ALA SER SER SER PHE LYS ALA ALA ASP SEQRES 2 B 369 LEU GLN LEU GLU MET THR GLN LYS PRO HIS LYS LYS PRO SEQRES 3 B 369 GLY PRO GLY GLU PRO LEU VAL PHE GLY LYS THR PHE THR SEQRES 4 B 369 ASP HIS MET LEU MET VAL GLU TRP ASN ASP LYS GLY TRP SEQRES 5 B 369 GLY GLN PRO ARG ILE GLN PRO PHE GLN ASN LEU THR LEU SEQRES 6 B 369 HIS PRO ALA SER SER SER LEU HIS TYR SER LEU GLN LEU SEQRES 7 B 369 PHE GLU GLY MET LYS ALA PHE LYS GLY LYS ASP GLN GLN SEQRES 8 B 369 VAL ARG LEU PHE ARG PRO TRP LEU ASN MET ASP ARG MET SEQRES 9 B 369 LEU ARG SER ALA MET ARG LEU CYS LEU PRO SER PHE ASP SEQRES 10 B 369 LYS LEU GLU LEU LEU GLU CYS ILE ARG ARG LEU ILE GLU SEQRES 11 B 369 VAL ASP LYS ASP TRP VAL PRO ASP ALA ALA GLY THR SER SEQRES 12 B 369 LEU TYR VAL ARG PRO VAL LEU ILE GLY ASN GLU PRO SER SEQRES 13 B 369 LEU GLY VAL SER GLN PRO THR ARG ALA LEU LEU PHE VAL SEQRES 14 B 369 ILE LEU CYS PRO VAL GLY ALA TYR PHE PRO GLY GLY SER SEQRES 15 B 369 VAL THR PRO VAL SER LEU LEU ALA ASP PRO ALA PHE ILE SEQRES 16 B 369 ARG ALA TRP VAL GLY GLY VAL GLY ASN TYR LYS LEU GLY SEQRES 17 B 369 GLY ASN TYR GLY PRO THR VAL LEU VAL GLN GLN GLU ALA SEQRES 18 B 369 LEU LYS ARG GLY CYS GLU GLN VAL LEU TRP LEU TYR GLY SEQRES 19 B 369 PRO ASP HIS GLN LEU THR GLU VAL GLY THR MET ASN ILE SEQRES 20 B 369 PHE VAL TYR TRP THR HIS GLU ASP GLY VAL LEU GLU LEU SEQRES 21 B 369 VAL THR PRO PRO LEU ASN GLY VAL ILE LEU PRO GLY VAL SEQRES 22 B 369 VAL ARG GLN SER LEU LEU ASP MET ALA GLN THR TRP GLY SEQRES 23 B 369 GLU PHE ARG VAL VAL GLU ARG THR ILE THR MET LYS GLN SEQRES 24 B 369 LEU LEU ARG ALA LEU GLU GLU GLY ARG VAL ARG GLU VAL SEQRES 25 B 369 PHE GLY SER GLY THR ALA CYS GLN VAL CYS PRO VAL HIS SEQRES 26 B 369 ARG ILE LEU TYR LYS ASP ARG ASN LEU HIS ILE PRO THR SEQRES 27 B 369 MET GLU ASN GLY PRO GLU LEU ILE LEU ARG PHE GLN LYS SEQRES 28 B 369 GLU LEU LYS GLU ILE GLN TYR GLY ILE ARG ALA HIS GLU SEQRES 29 B 369 TRP MET PHE PRO VAL HET PLP A 401 15 HET 67Y A 402 15 HET CL A 403 1 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET PLP B 401 15 HET 67Y B 402 15 HET CL B 403 1 HET GOL B 404 6 HET EDO B 405 4 HET EDO B 406 4 HET EDO B 407 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM 67Y 2-HYDROXY-N-[(1R)-1,2,3,4-TETRAHYDRONAPHTHALEN-1- HETNAM 2 67Y YL]ACETAMIDE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 67Y 2(C12 H15 N O2) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 13 GOL C3 H8 O3 FORMUL 17 HOH *518(H2 O) HELIX 1 AA1 LYS A 6 LEU A 10 5 5 HELIX 2 AA2 SER A 65 TYR A 70 1 6 HELIX 3 AA3 ARG A 92 LEU A 107 1 16 HELIX 4 AA4 ASP A 113 ASP A 128 1 16 HELIX 5 AA5 LYS A 129 VAL A 132 5 4 HELIX 6 AA6 LEU A 203 GLY A 208 5 6 HELIX 7 AA7 PRO A 209 ARG A 220 1 12 HELIX 8 AA8 GLY A 268 GLY A 282 1 15 HELIX 9 AA9 THR A 292 GLU A 302 1 11 HELIX 10 AB1 THR A 334 GLY A 338 5 5 HELIX 11 AB2 PRO A 339 TYR A 354 1 16 HELIX 12 AB3 SER B 65 TYR B 70 1 6 HELIX 13 AB4 ARG B 92 LEU B 107 1 16 HELIX 14 AB5 ASP B 113 ASP B 128 1 16 HELIX 15 AB6 LYS B 129 VAL B 132 5 4 HELIX 16 AB7 LEU B 203 GLY B 208 5 6 HELIX 17 AB8 PRO B 209 ARG B 220 1 12 HELIX 18 AB9 GLY B 268 GLY B 282 1 15 HELIX 19 AC1 THR B 292 GLU B 302 1 11 HELIX 20 AC2 THR B 334 GLY B 338 5 5 HELIX 21 AC3 PRO B 339 TYR B 354 1 16 SHEET 1 AA1 6 GLN A 11 LEU A 12 0 SHEET 2 AA1 6 ARG A 52 PRO A 55 1 O ILE A 53 N GLN A 11 SHEET 3 AA1 6 HIS A 37 ASN A 44 -1 N MET A 38 O GLN A 54 SHEET 4 AA1 6 ALA A 161 VAL A 170 -1 O LEU A 163 N VAL A 41 SHEET 5 AA1 6 SER A 139 GLY A 148 -1 N SER A 139 O VAL A 170 SHEET 6 AA1 6 GLN A 73 PHE A 75 -1 N LEU A 74 O LEU A 146 SHEET 1 AA2 7 GLY A 47 TRP A 48 0 SHEET 2 AA2 7 HIS A 37 ASN A 44 -1 N ASN A 44 O GLY A 47 SHEET 3 AA2 7 ALA A 161 VAL A 170 -1 O LEU A 163 N VAL A 41 SHEET 4 AA2 7 SER A 139 GLY A 148 -1 N SER A 139 O VAL A 170 SHEET 5 AA2 7 MET A 78 LYS A 82 -1 N MET A 78 O VAL A 142 SHEET 6 AA2 7 VAL A 88 PHE A 91 -1 O ARG A 89 N PHE A 81 SHEET 7 AA2 7 MET A 362 PRO A 364 -1 O PHE A 363 N LEU A 90 SHEET 1 AA3 2 LEU A 59 LEU A 61 0 SHEET 2 AA3 2 LEU B 59 LEU B 61 -1 O LEU B 59 N LEU A 61 SHEET 1 AA4 8 ARG A 285 GLU A 288 0 SHEET 2 AA4 8 LEU A 254 THR A 258 1 N LEU A 256 O VAL A 287 SHEET 3 AA4 8 MET A 241 THR A 248 -1 N TRP A 247 O GLU A 255 SHEET 4 AA4 8 GLN A 234 VAL A 238 -1 N VAL A 238 O MET A 241 SHEET 5 AA4 8 GLN A 224 TYR A 229 -1 N TYR A 229 O GLN A 234 SHEET 6 AA4 8 VAL A 182 ALA A 186 1 N LEU A 185 O GLN A 224 SHEET 7 AA4 8 GLN A 316 TYR A 325 1 O LEU A 324 N LEU A 184 SHEET 8 AA4 8 ARG A 328 HIS A 331 -1 O LEU A 330 N ILE A 323 SHEET 1 AA5 6 ARG A 285 GLU A 288 0 SHEET 2 AA5 6 LEU A 254 THR A 258 1 N LEU A 256 O VAL A 287 SHEET 3 AA5 6 MET A 241 THR A 248 -1 N TRP A 247 O GLU A 255 SHEET 4 AA5 6 VAL A 305 GLY A 312 -1 O GLU A 307 N TYR A 246 SHEET 5 AA5 6 GLN A 316 TYR A 325 -1 O CYS A 318 N GLY A 310 SHEET 6 AA5 6 ARG A 328 HIS A 331 -1 O LEU A 330 N ILE A 323 SHEET 1 AA6 6 GLN B 11 LEU B 12 0 SHEET 2 AA6 6 ARG B 52 PRO B 55 1 O ILE B 53 N GLN B 11 SHEET 3 AA6 6 HIS B 37 ASN B 44 -1 N MET B 38 O GLN B 54 SHEET 4 AA6 6 ALA B 161 VAL B 170 -1 O LEU B 163 N VAL B 41 SHEET 5 AA6 6 SER B 139 GLY B 148 -1 N TYR B 141 O CYS B 168 SHEET 6 AA6 6 GLN B 73 PHE B 75 -1 N LEU B 74 O LEU B 146 SHEET 1 AA7 7 GLY B 47 TRP B 48 0 SHEET 2 AA7 7 HIS B 37 ASN B 44 -1 N ASN B 44 O GLY B 47 SHEET 3 AA7 7 ALA B 161 VAL B 170 -1 O LEU B 163 N VAL B 41 SHEET 4 AA7 7 SER B 139 GLY B 148 -1 N TYR B 141 O CYS B 168 SHEET 5 AA7 7 MET B 78 LYS B 82 -1 N MET B 78 O VAL B 142 SHEET 6 AA7 7 VAL B 88 PHE B 91 -1 O ARG B 89 N PHE B 81 SHEET 7 AA7 7 MET B 362 PRO B 364 -1 O PHE B 363 N LEU B 90 SHEET 1 AA8 8 ARG B 285 GLU B 288 0 SHEET 2 AA8 8 LEU B 254 THR B 258 1 N LEU B 256 O VAL B 287 SHEET 3 AA8 8 MET B 241 THR B 248 -1 N TRP B 247 O GLU B 255 SHEET 4 AA8 8 GLN B 234 VAL B 238 -1 N VAL B 238 O MET B 241 SHEET 5 AA8 8 GLN B 224 TYR B 229 -1 N TYR B 229 O GLN B 234 SHEET 6 AA8 8 VAL B 182 ALA B 186 1 N LEU B 185 O LEU B 226 SHEET 7 AA8 8 GLN B 316 TYR B 325 1 O LEU B 324 N LEU B 184 SHEET 8 AA8 8 ARG B 328 HIS B 331 -1 O LEU B 330 N ILE B 323 SHEET 1 AA9 6 ARG B 285 GLU B 288 0 SHEET 2 AA9 6 LEU B 254 THR B 258 1 N LEU B 256 O VAL B 287 SHEET 3 AA9 6 MET B 241 THR B 248 -1 N TRP B 247 O GLU B 255 SHEET 4 AA9 6 VAL B 305 GLY B 312 -1 O PHE B 309 N PHE B 244 SHEET 5 AA9 6 GLN B 316 TYR B 325 -1 O CYS B 318 N GLY B 310 SHEET 6 AA9 6 ARG B 328 HIS B 331 -1 O LEU B 330 N ILE B 323 LINK NZ LYS A 202 C4A PLP A 401 1555 1555 1.40 LINK NZ LYS B 202 C4A PLP B 401 1555 1555 1.39 CISPEP 1 GLY A 338 PRO A 339 0 -1.63 CISPEP 2 GLY B 338 PRO B 339 0 -1.25 SITE 1 AC1 17 ARG A 99 ARG A 192 LYS A 202 TYR A 207 SITE 2 AC1 17 GLU A 237 THR A 240 ASN A 242 LEU A 266 SITE 3 AC1 17 GLY A 268 VAL A 269 VAL A 270 GLY A 312 SITE 4 AC1 17 THR A 313 67Y A 402 HOH A 519 HOH A 551 SITE 5 AC1 17 HOH A 558 SITE 1 AC2 17 PHE A 30 PHE A 75 TYR A 173 LYS A 202 SITE 2 AC2 17 TYR A 207 THR A 240 MET A 241 GLY A 312 SITE 3 AC2 17 THR A 313 ALA A 314 CYS A 315 PLP A 401 SITE 4 AC2 17 HOH A 559 HOH A 666 TYR B 70 LEU B 153 SITE 5 AC2 17 VAL B 155 SITE 1 AC3 5 TYR A 246 LEU A 341 ARG A 344 HOH A 504 SITE 2 AC3 5 HOH A 536 SITE 1 AC4 3 VAL A 195 TYR A 229 HOH A 646 SITE 1 AC5 3 ASN A 200 LEU A 261 ASN A 262 SITE 1 AC6 2 GLU A 250 ARG A 298 SITE 1 AC7 17 TYR A 70 LEU A 153 VAL A 155 PHE B 30 SITE 2 AC7 17 PHE B 75 TYR B 173 LYS B 202 TYR B 207 SITE 3 AC7 17 THR B 240 MET B 241 GLY B 312 THR B 313 SITE 4 AC7 17 ALA B 314 CYS B 315 PLP B 401 HOH B 514 SITE 5 AC7 17 HOH B 542 SITE 1 AC8 2 GLY B 282 HOH B 623 SITE 1 AC9 6 ASP B 276 MET B 277 THR B 280 GLU B 348 SITE 2 AC9 6 HIS B 359 HOH B 504 SITE 1 AD1 5 TYR B 246 PHE B 284 GLU B 340 ARG B 344 SITE 2 AD1 5 HOH B 563 SITE 1 AD2 6 GLU B 42 LEU B 59 THR B 60 LEU B 162 SITE 2 AD2 6 HOH B 639 HOH B 640 SITE 1 AD3 21 LEU B 74 PHE B 75 ARG B 99 SER B 103 SITE 2 AD3 21 ARG B 192 TYR B 201 LEU B 203 TYR B 207 SITE 3 AD3 21 GLU B 237 THR B 240 ASN B 242 LEU B 266 SITE 4 AD3 21 GLY B 268 VAL B 269 VAL B 270 GLY B 312 SITE 5 AD3 21 THR B 313 67Y B 402 HOH B 515 HOH B 524 SITE 6 AD3 21 HOH B 578 CRYST1 69.074 105.995 107.462 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009306 0.00000