HEADER HYDROLASE 15-FEB-16 5I63 TITLE CRYSTAL STRUCTURE OF TEM1 BETA-LACTAMASE MUTANT I263N IN THE PRESENCE TITLE 2 OF 1.2 MPA XENON COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE TEM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: IRT-4,PENICILLINASE,TEM-1,TEM-16/CAZ-7,TEM-2,TEM-24/CAZ-6, COMPND 5 TEM-3,TEM-4,TEM-5,TEM-6,TEM-8/CAZ-2; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLA, BLAT-3, BLAT-4, BLAT-5, BLAT-6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJ411 KEYWDS HYDROLASE, XENON EXPDTA X-RAY DIFFRACTION AUTHOR B.W.ROOSE,I.J.DMOCHOWSKI REVDAT 6 13-NOV-24 5I63 1 REMARK REVDAT 5 27-SEP-23 5I63 1 REMARK REVDAT 4 25-DEC-19 5I63 1 REMARK REVDAT 3 16-JAN-19 5I63 1 JRNL REVDAT 2 20-SEP-17 5I63 1 REMARK REVDAT 1 28-JUN-17 5I63 0 JRNL AUTH B.W.ROOSE,S.D.ZEMEROV,Y.WANG,M.A.KASIMOVA,V.CARNEVALE, JRNL AUTH 2 I.J.DMOCHOWSKI JRNL TITL A STRUCTURAL BASIS FOR129XE HYPER-CEST SIGNAL IN TEM-1 JRNL TITL 2 BETA-LACTAMASE. JRNL REF CHEMPHYSCHEM 2018 JRNL REFN ISSN 1439-7641 JRNL PMID 30151973 JRNL DOI 10.1002/CPHC.201800624 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 68198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 6830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5677 - 5.2896 0.94 6472 342 0.1839 0.1860 REMARK 3 2 5.2896 - 4.2003 0.94 6423 344 0.1435 0.1856 REMARK 3 3 4.2003 - 3.6699 0.94 6419 331 0.1517 0.1987 REMARK 3 4 3.6699 - 3.3346 0.93 6370 344 0.1576 0.1728 REMARK 3 5 3.3346 - 3.0957 0.93 6468 345 0.1761 0.2187 REMARK 3 6 3.0957 - 2.9133 0.93 6300 337 0.1893 0.2180 REMARK 3 7 2.9133 - 2.7674 0.92 6311 333 0.1916 0.2331 REMARK 3 8 2.7674 - 2.6470 0.92 6373 352 0.2023 0.2152 REMARK 3 9 2.6470 - 2.5451 0.92 6299 336 0.1851 0.2345 REMARK 3 10 2.5451 - 2.4573 0.92 6330 320 0.1939 0.2239 REMARK 3 11 2.4573 - 2.3805 0.92 6318 331 0.2003 0.2396 REMARK 3 12 2.3805 - 2.3124 0.92 6253 315 0.2000 0.2508 REMARK 3 13 2.3124 - 2.2516 0.91 6251 335 0.1984 0.2487 REMARK 3 14 2.2516 - 2.1966 0.91 6302 325 0.2041 0.2487 REMARK 3 15 2.1966 - 2.1467 0.91 6215 311 0.1984 0.2357 REMARK 3 16 2.1467 - 2.1010 0.91 6244 325 0.2033 0.2399 REMARK 3 17 2.1010 - 2.0590 0.90 6240 337 0.2171 0.2797 REMARK 3 18 2.0590 - 2.0201 0.90 6173 323 0.2216 0.2860 REMARK 3 19 2.0201 - 1.9841 0.90 6274 329 0.2237 0.2528 REMARK 3 20 1.9841 - 1.9504 0.90 6106 322 0.2277 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.3800 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8141 REMARK 3 ANGLE : 0.849 11051 REMARK 3 CHIRALITY : 0.049 1286 REMARK 3 PLANARITY : 0.004 1441 REMARK 3 DIHEDRAL : 13.031 3013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.181 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 63.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE (PH 7.0), 20% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.10000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 LYS A 256 NZ REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 ASN B 52 CG OD1 ND2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 GLU C 28 CD OE1 OE2 REMARK 470 ASN C 52 CG OD1 ND2 REMARK 470 LYS C 55 CG CD CE NZ REMARK 470 GLU C 104 CG CD OE1 OE2 REMARK 470 GLU C 168 CG CD OE1 OE2 REMARK 470 LEU C 198 CG CD1 CD2 REMARK 470 GLU C 274 CG CD OE1 OE2 REMARK 470 LYS D 32 CG CD CE NZ REMARK 470 GLU D 63 CD OE1 OE2 REMARK 470 GLN D 99 CD OE1 NE2 REMARK 470 ASN D 100 CG OD1 ND2 REMARK 470 GLU D 104 CG CD OE1 OE2 REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 GLU D 281 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP D 273 NH1 ARG D 277 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 197 C GLU A 197 O -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 282 CA - C - O ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 -73.17 -72.32 REMARK 500 MET A 69 -136.41 54.36 REMARK 500 TYR A 105 78.00 51.08 REMARK 500 LEU A 198 -77.48 -64.21 REMARK 500 LEU A 220 -119.66 -101.50 REMARK 500 SER A 258 -16.14 -142.32 REMARK 500 HIS A 289 74.32 -104.02 REMARK 500 MET B 69 -140.16 54.96 REMARK 500 TYR B 105 83.40 53.63 REMARK 500 LEU B 220 -119.01 -97.28 REMARK 500 MET C 69 -142.85 54.03 REMARK 500 TYR C 105 77.35 60.00 REMARK 500 LEU C 220 -117.90 -108.57 REMARK 500 MET D 69 -150.41 58.04 REMARK 500 TYR D 105 91.12 63.67 REMARK 500 LEU D 220 -120.63 -94.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 544 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH D 552 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH D 553 DISTANCE = 6.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I52 RELATED DB: PDB DBREF 5I63 A 26 290 UNP P62593 BLAT_ECOLX 24 286 DBREF 5I63 B 26 290 UNP P62593 BLAT_ECOLX 24 286 DBREF 5I63 C 26 290 UNP P62593 BLAT_ECOLX 24 286 DBREF 5I63 D 26 290 UNP P62593 BLAT_ECOLX 24 286 SEQADV 5I63 THR A 182 UNP P62593 MET 180 ENGINEERED MUTATION SEQADV 5I63 ASN A 263 UNP P62593 ILE 259 ENGINEERED MUTATION SEQADV 5I63 THR B 182 UNP P62593 MET 180 ENGINEERED MUTATION SEQADV 5I63 ASN B 263 UNP P62593 ILE 259 ENGINEERED MUTATION SEQADV 5I63 THR C 182 UNP P62593 MET 180 ENGINEERED MUTATION SEQADV 5I63 ASN C 263 UNP P62593 ILE 259 ENGINEERED MUTATION SEQADV 5I63 THR D 182 UNP P62593 MET 180 ENGINEERED MUTATION SEQADV 5I63 ASN D 263 UNP P62593 ILE 259 ENGINEERED MUTATION SEQRES 1 A 263 HIS PRO GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP SEQRES 2 A 263 GLN LEU GLY ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU SEQRES 3 A 263 ASN SER GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU SEQRES 4 A 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 A 263 GLY ALA VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN SEQRES 6 A 263 LEU GLY ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL SEQRES 7 A 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY SEQRES 8 A 263 MET THR VAL ARG GLU LEU CYS SER ALA ALA ILE THR MET SEQRES 9 A 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE SEQRES 10 A 263 GLY GLY PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET SEQRES 11 A 263 GLY ASP HIS VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 A 263 LEU ASN GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR SEQRES 13 A 263 THR PRO ALA ALA MET ALA THR THR LEU ARG LYS LEU LEU SEQRES 14 A 263 THR GLY GLU LEU LEU THR LEU ALA SER ARG GLN GLN LEU SEQRES 15 A 263 ILE ASP TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 A 263 LEU ARG SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 A 263 LYS SER GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 A 263 ALA ALA LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 A 263 VAL ASN TYR THR THR GLY SER GLN ALA THR MET ASP GLU SEQRES 20 A 263 ARG ASN ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE SEQRES 21 A 263 LYS HIS TRP SEQRES 1 B 263 HIS PRO GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP SEQRES 2 B 263 GLN LEU GLY ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU SEQRES 3 B 263 ASN SER GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU SEQRES 4 B 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 B 263 GLY ALA VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN SEQRES 6 B 263 LEU GLY ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL SEQRES 7 B 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY SEQRES 8 B 263 MET THR VAL ARG GLU LEU CYS SER ALA ALA ILE THR MET SEQRES 9 B 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE SEQRES 10 B 263 GLY GLY PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET SEQRES 11 B 263 GLY ASP HIS VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 B 263 LEU ASN GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR SEQRES 13 B 263 THR PRO ALA ALA MET ALA THR THR LEU ARG LYS LEU LEU SEQRES 14 B 263 THR GLY GLU LEU LEU THR LEU ALA SER ARG GLN GLN LEU SEQRES 15 B 263 ILE ASP TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 B 263 LEU ARG SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 B 263 LYS SER GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 B 263 ALA ALA LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 B 263 VAL ASN TYR THR THR GLY SER GLN ALA THR MET ASP GLU SEQRES 20 B 263 ARG ASN ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE SEQRES 21 B 263 LYS HIS TRP SEQRES 1 C 263 HIS PRO GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP SEQRES 2 C 263 GLN LEU GLY ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU SEQRES 3 C 263 ASN SER GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU SEQRES 4 C 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 C 263 GLY ALA VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN SEQRES 6 C 263 LEU GLY ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL SEQRES 7 C 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY SEQRES 8 C 263 MET THR VAL ARG GLU LEU CYS SER ALA ALA ILE THR MET SEQRES 9 C 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE SEQRES 10 C 263 GLY GLY PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET SEQRES 11 C 263 GLY ASP HIS VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 C 263 LEU ASN GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR SEQRES 13 C 263 THR PRO ALA ALA MET ALA THR THR LEU ARG LYS LEU LEU SEQRES 14 C 263 THR GLY GLU LEU LEU THR LEU ALA SER ARG GLN GLN LEU SEQRES 15 C 263 ILE ASP TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 C 263 LEU ARG SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 C 263 LYS SER GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 C 263 ALA ALA LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 C 263 VAL ASN TYR THR THR GLY SER GLN ALA THR MET ASP GLU SEQRES 20 C 263 ARG ASN ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE SEQRES 21 C 263 LYS HIS TRP SEQRES 1 D 263 HIS PRO GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP SEQRES 2 D 263 GLN LEU GLY ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU SEQRES 3 D 263 ASN SER GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU SEQRES 4 D 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 D 263 GLY ALA VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN SEQRES 6 D 263 LEU GLY ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL SEQRES 7 D 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY SEQRES 8 D 263 MET THR VAL ARG GLU LEU CYS SER ALA ALA ILE THR MET SEQRES 9 D 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE SEQRES 10 D 263 GLY GLY PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET SEQRES 11 D 263 GLY ASP HIS VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 D 263 LEU ASN GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR SEQRES 13 D 263 THR PRO ALA ALA MET ALA THR THR LEU ARG LYS LEU LEU SEQRES 14 D 263 THR GLY GLU LEU LEU THR LEU ALA SER ARG GLN GLN LEU SEQRES 15 D 263 ILE ASP TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 D 263 LEU ARG SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 D 263 LYS SER GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 D 263 ALA ALA LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 D 263 VAL ASN TYR THR THR GLY SER GLN ALA THR MET ASP GLU SEQRES 20 D 263 ARG ASN ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE SEQRES 21 D 263 LYS HIS TRP HET XE A 301 1 HET XE A 302 1 HET XE B 301 1 HET XE B 302 1 HET XE C 301 1 HET XE C 302 1 HET XE D 301 1 HET XE D 302 1 HETNAM XE XENON FORMUL 5 XE 8(XE) FORMUL 13 HOH *608(H2 O) HELIX 1 AA1 HIS A 26 GLY A 41 1 16 HELIX 2 AA2 MET A 69 THR A 71 5 3 HELIX 3 AA3 PHE A 72 ALA A 86 1 15 HELIX 4 AA4 SER A 98 LEU A 102 5 5 HELIX 5 AA5 VAL A 108 HIS A 112 5 5 HELIX 6 AA6 VAL A 119 MET A 129 1 11 HELIX 7 AA7 ASP A 131 GLY A 143 1 13 HELIX 8 AA8 GLY A 144 ASN A 154 1 11 HELIX 9 AA9 PRO A 167 GLU A 171 5 5 HELIX 10 AB1 THR A 182 GLY A 196 1 15 HELIX 11 AB2 THR A 200 ALA A 213 1 14 HELIX 12 AB3 LEU A 220 LEU A 225 5 6 HELIX 13 AB4 THR A 271 HIS A 289 1 19 HELIX 14 AB5 PRO B 27 GLY B 41 1 15 HELIX 15 AB6 THR B 71 ALA B 86 1 16 HELIX 16 AB7 SER B 98 LEU B 102 5 5 HELIX 17 AB8 VAL B 108 HIS B 112 5 5 HELIX 18 AB9 VAL B 119 MET B 129 1 11 HELIX 19 AC1 ASP B 131 GLY B 143 1 13 HELIX 20 AC2 GLY B 144 MET B 155 1 12 HELIX 21 AC3 PRO B 167 GLU B 171 5 5 HELIX 22 AC4 THR B 182 GLY B 196 1 15 HELIX 23 AC5 THR B 200 ALA B 213 1 14 HELIX 24 AC6 LEU B 220 LEU B 225 5 6 HELIX 25 AC7 THR B 271 HIS B 289 1 19 HELIX 26 AC8 PRO C 27 GLY C 41 1 15 HELIX 27 AC9 THR C 71 ALA C 86 1 16 HELIX 28 AD1 SER C 98 LEU C 102 5 5 HELIX 29 AD2 VAL C 108 HIS C 112 5 5 HELIX 30 AD3 VAL C 119 MET C 129 1 11 HELIX 31 AD4 ASP C 131 GLY C 143 1 13 HELIX 32 AD5 GLY C 144 MET C 155 1 12 HELIX 33 AD6 PRO C 167 GLU C 171 5 5 HELIX 34 AD7 THR C 182 GLY C 196 1 15 HELIX 35 AD8 THR C 200 ALA C 213 1 14 HELIX 36 AD9 LEU C 220 LEU C 225 1 6 HELIX 37 AE1 THR C 271 HIS C 289 1 19 HELIX 38 AE2 PRO D 27 GLY D 41 1 15 HELIX 39 AE3 THR D 71 ALA D 86 1 16 HELIX 40 AE4 SER D 98 LEU D 102 5 5 HELIX 41 AE5 VAL D 108 HIS D 112 5 5 HELIX 42 AE6 VAL D 119 SER D 130 1 12 HELIX 43 AE7 ASP D 131 GLY D 143 1 13 HELIX 44 AE8 GLY D 144 MET D 155 1 12 HELIX 45 AE9 PRO D 167 GLU D 171 5 5 HELIX 46 AF1 THR D 182 GLY D 196 1 15 HELIX 47 AF2 THR D 200 ALA D 213 1 14 HELIX 48 AF3 LEU D 220 LEU D 225 5 6 HELIX 49 AF4 THR D 271 HIS D 289 1 19 SHEET 1 AA1 5 ILE A 56 PHE A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N GLU A 48 O GLU A 58 SHEET 3 AA1 5 ARG A 259 THR A 266 -1 O ILE A 260 N LEU A 49 SHEET 4 AA1 5 ARG A 244 GLY A 251 -1 N ALA A 248 O VAL A 261 SHEET 5 AA1 5 PHE A 230 ALA A 237 -1 N PHE A 230 O GLY A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 AA4 5 ILE B 56 PHE B 60 0 SHEET 2 AA4 5 ARG B 43 ASP B 50 -1 N GLU B 48 O LEU B 57 SHEET 3 AA4 5 ARG B 259 THR B 266 -1 O ILE B 260 N LEU B 49 SHEET 4 AA4 5 ARG B 244 GLY B 251 -1 N ALA B 248 O VAL B 261 SHEET 5 AA4 5 PHE B 230 ALA B 237 -1 N PHE B 230 O GLY B 251 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 ARG B 94 ILE B 95 0 SHEET 2 AA6 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 SHEET 1 AA7 5 ILE C 56 PHE C 60 0 SHEET 2 AA7 5 ARG C 43 ASP C 50 -1 N GLU C 48 O LEU C 57 SHEET 3 AA7 5 ARG C 259 THR C 266 -1 O ILE C 260 N LEU C 49 SHEET 4 AA7 5 ARG C 244 GLY C 251 -1 N ALA C 248 O VAL C 261 SHEET 5 AA7 5 PHE C 230 ALA C 237 -1 N PHE C 230 O GLY C 251 SHEET 1 AA8 2 PHE C 66 PRO C 67 0 SHEET 2 AA8 2 THR C 180 THR C 181 -1 O THR C 181 N PHE C 66 SHEET 1 AA9 2 ARG C 94 ILE C 95 0 SHEET 2 AA9 2 MET C 117 THR C 118 -1 O MET C 117 N ILE C 95 SHEET 1 AB1 5 ILE D 56 PHE D 60 0 SHEET 2 AB1 5 ARG D 43 ASP D 50 -1 N GLU D 48 O LEU D 57 SHEET 3 AB1 5 ARG D 259 THR D 266 -1 O ILE D 260 N LEU D 49 SHEET 4 AB1 5 ARG D 244 GLY D 251 -1 N ARG D 244 O THR D 265 SHEET 5 AB1 5 PHE D 230 ALA D 237 -1 N ALA D 232 O ALA D 249 SHEET 1 AB2 2 PHE D 66 PRO D 67 0 SHEET 2 AB2 2 THR D 180 THR D 181 -1 O THR D 181 N PHE D 66 SHEET 1 AB3 2 ARG D 94 ILE D 95 0 SHEET 2 AB3 2 MET D 117 THR D 118 -1 O MET D 117 N ILE D 95 SSBOND 1 CYS A 77 CYS A 123 1555 1555 2.04 SSBOND 2 CYS B 77 CYS B 123 1555 1555 2.04 SSBOND 3 CYS C 77 CYS C 123 1555 1555 2.04 SSBOND 4 CYS D 77 CYS D 123 1555 1555 2.04 CISPEP 1 GLU A 166 PRO A 167 0 3.43 CISPEP 2 GLU B 166 PRO B 167 0 4.71 CISPEP 3 GLU C 166 PRO C 167 0 -0.32 CISPEP 4 GLU D 166 PRO D 167 0 5.95 SITE 1 AC1 2 LEU A 40 THR A 265 SITE 1 AC2 3 ASN A 263 ILE A 279 ILE A 282 SITE 1 AC3 2 ASN B 263 ILE B 279 SITE 1 AC4 2 LEU B 221 ILE B 279 SITE 1 AC5 1 LEU C 221 SITE 1 AC6 3 ASN D 263 ILE D 279 ILE D 282 SITE 1 AC7 1 LEU D 221 CRYST1 60.070 84.200 96.220 90.00 89.97 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016647 0.000000 -0.000009 0.00000 SCALE2 0.000000 0.011876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010393 0.00000