HEADER HYDROLASE/HYDROLASE INHIBITOR 16-FEB-16 5I70 TITLE CRYSTAL STRUCTURE OF PLASMEPSIN IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMEPSIN IV; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 122-449; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPSTATIN A; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 7G8); SOURCE 3 ORGANISM_TAXID: 57266; SOURCE 4 STRAIN: ISOLATE 7G8; SOURCE 5 GENE: PFBG_05102; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ACTINOMYCES; SOURCE 11 ORGANISM_TAXID: 1654 KEYWDS PLASMEPSIN, ASPARTIC PROTEASE, MALARIA, CATHEPSIN D LIKE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ASOJO REVDAT 3 27-SEP-17 5I70 1 REMARK REVDAT 2 20-JUL-16 5I70 1 REMARK REVDAT 1 09-MAR-16 5I70 0 JRNL AUTH O.A.ASOJO JRNL TITL CRYSTAL STRUCTURE OF PLASMEPSIN IV JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 14043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.200 REMARK 3 FREE R VALUE TEST SET COUNT : 929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.49000 REMARK 3 B22 (A**2) : 5.49000 REMARK 3 B33 (A**2) : -10.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.875 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.820 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5181 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7030 ; 1.671 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 8.399 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;35.626 ;25.498 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 796 ;16.688 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.641 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 788 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3918 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2578 ; 1.189 ; 1.969 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3186 ; 1.978 ; 2.926 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2602 ; 1.432 ; 2.032 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7550 ; 4.066 ;16.549 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15066 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10M SODIUM PHOSPHATE BUFFER (PH 5.5) REMARK 280 AND 60% (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.23000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.46000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.46000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PEPSTATIN IS OLIGOPEPTIDE, A MEMBER OF ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PEPSTATIN REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 163 REMARK 465 HIS B 164 REMARK 465 LEU B 328 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 LYS A 163 REMARK 465 ARG A 232 REMARK 465 ASP A 233 REMARK 465 MET A 234 REMARK 465 ASN A 235 REMARK 465 LEU A 242 REMARK 465 PRO A 243 REMARK 465 LEU A 244 REMARK 465 LEU A 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 162 CG OD1 OD2 REMARK 470 ARG B 232 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 235 CG OD1 ND2 REMARK 470 PHE B 241 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 VAL A 160 CB CG1 CG2 REMARK 470 HIS A 161 CB CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 162 CB CG OD1 OD2 REMARK 470 HIS A 164 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 203 CB CG CD CE NZ REMARK 470 VAL A 205 CG1 CG2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 PHE A 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 236 CG1 CG2 REMARK 470 ILE A 237 CG1 CG2 CD1 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 PHE A 241 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 236 O VAL A 246 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 249 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 CYS A 249 CA - CB - SG ANGL. DEV. = 11.8 DEGREES REMARK 500 VAL C 3 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 STA C 4 C - N - CA ANGL. DEV. = 17.7 DEGREES REMARK 500 STA D 352 CA - C - N ANGL. DEV. = 28.4 DEGREES REMARK 500 STA D 352 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 ALA D 353 C - N - CA ANGL. DEV. = -16.0 DEGREES REMARK 500 ALA D 353 CA - C - N ANGL. DEV. = 24.0 DEGREES REMARK 500 ALA D 353 O - C - N ANGL. DEV. = -27.0 DEGREES REMARK 500 STA D 354 C - N - CA ANGL. DEV. = 24.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 38 35.89 -140.41 REMARK 500 ASP B 69 -72.99 -128.37 REMARK 500 PRO B 159 -156.84 -91.69 REMARK 500 HIS B 161 -35.62 127.12 REMARK 500 LEU B 191 -79.21 -134.36 REMARK 500 LYS B 208 66.46 25.33 REMARK 500 MET B 234 28.81 -156.83 REMARK 500 ASN B 235 69.11 -0.81 REMARK 500 PHE B 241 16.91 90.03 REMARK 500 ILE B 280 -95.79 -125.19 REMARK 500 ASP B 295 -152.19 -151.59 REMARK 500 ASN B 297 20.64 -144.80 REMARK 500 ALA A 38 35.31 -140.70 REMARK 500 ASP A 69 -72.93 -126.71 REMARK 500 VAL A 160 74.20 -112.89 REMARK 500 HIS A 161 25.50 84.31 REMARK 500 LEU A 191 -80.32 -134.22 REMARK 500 PHE A 201 -143.74 -94.12 REMARK 500 LYS A 208 65.27 25.27 REMARK 500 ILE A 237 93.79 25.37 REMARK 500 ARG A 262 25.68 43.93 REMARK 500 ASN A 263 -24.87 -174.97 REMARK 500 ASP A 279 -30.41 76.36 REMARK 500 ASP A 281 82.64 67.04 REMARK 500 ASP A 295 -152.94 -151.32 REMARK 500 ASN A 297 20.10 -144.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 111 GLU B 112 -146.16 REMARK 500 GLU B 112 PRO B 113 133.29 REMARK 500 VAL B 160 HIS B 161 141.21 REMARK 500 LEU A 111 GLU A 112 -147.03 REMARK 500 GLU A 112 PRO A 113 133.04 REMARK 500 IVA C 1 VAL C 2 -132.13 REMARK 500 VAL C 3 STA C 4 -130.39 REMARK 500 STA C 4 ALA C 5 -118.87 REMARK 500 VAL D 351 STA D 352 -146.86 REMARK 500 STA D 352 ALA D 353 -115.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 STA C 4 35.60 REMARK 500 STA D 352 11.52 REMARK 500 ALA D 353 -18.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Pepstatin chain C REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Pepstatin chain D DBREF 5I70 B 1 328 UNP W7FF86 W7FF86_PLAF8 122 449 DBREF 5I70 A 1 328 UNP W7FF86 W7FF86_PLAF8 122 449 DBREF 5I70 C 1 6 PDB 5I70 5I70 1 6 DBREF 5I70 D 349 354 PDB 5I70 5I70 349 354 SEQRES 1 B 328 SER GLU ASN ASP SER ILE GLU LEU ASP ASP VAL ALA ASN SEQRES 2 B 328 LEU MET PHE TYR GLY GLU GLY GLN ILE GLY THR ASN LYS SEQRES 3 B 328 GLN PRO PHE MET PHE ILE PHE ASP THR GLY SER ALA ASN SEQRES 4 B 328 LEU TRP VAL PRO SER VAL ASN CYS ASP SER ILE GLY CYS SEQRES 5 B 328 SER THR LYS HIS LEU TYR ASP ALA SER ALA SER LYS SER SEQRES 6 B 328 TYR GLU LYS ASP GLY THR LYS VAL GLU ILE SER TYR GLY SEQRES 7 B 328 SER GLY THR VAL ARG GLY TYR PHE SER LYS ASP VAL ILE SEQRES 8 B 328 SER LEU GLY ASP LEU SER LEU PRO TYR LYS PHE ILE GLU SEQRES 9 B 328 VAL THR ASP ALA ASP ASP LEU GLU PRO ILE TYR SER GLY SEQRES 10 B 328 SER GLU PHE ASP GLY ILE LEU GLY LEU GLY TRP LYS ASP SEQRES 11 B 328 LEU SER ILE GLY SER ILE ASP PRO VAL VAL VAL GLU LEU SEQRES 12 B 328 LYS LYS GLN ASN LYS ILE ASP ASN ALA LEU PHE THR PHE SEQRES 13 B 328 TYR LEU PRO VAL HIS ASP LYS HIS VAL GLY TYR LEU THR SEQRES 14 B 328 ILE GLY GLY ILE GLU SER ASP PHE TYR GLU GLY PRO LEU SEQRES 15 B 328 THR TYR GLU LYS LEU ASN HIS ASP LEU TYR TRP GLN ILE SEQRES 16 B 328 ASP LEU ASP ILE HIS PHE GLY LYS TYR VAL MET GLN LYS SEQRES 17 B 328 ALA ASN ALA VAL VAL ASP SER GLY THR SER THR ILE THR SEQRES 18 B 328 ALA PRO THR SER PHE LEU ASN LYS PHE PHE ARG ASP MET SEQRES 19 B 328 ASN VAL ILE LYS VAL PRO PHE LEU PRO LEU TYR VAL THR SEQRES 20 B 328 THR CYS ASP ASN ASP ASP LEU PRO THR LEU GLU PHE HIS SEQRES 21 B 328 SER ARG ASN ASN LYS TYR THR LEU GLU PRO GLU PHE TYR SEQRES 22 B 328 MET ASP PRO LEU SER ASP ILE ASP PRO ALA LEU CYS MET SEQRES 23 B 328 LEU TYR ILE LEU PRO VAL ASP ILE ASP ASP ASN THR PHE SEQRES 24 B 328 ILE LEU GLY ASP PRO PHE MET ARG LYS TYR PHE THR VAL SEQRES 25 B 328 PHE ASP TYR GLU LYS GLU SER VAL GLY PHE ALA VAL ALA SEQRES 26 B 328 LYS ASN LEU SEQRES 1 A 328 SER GLU ASN ASP SER ILE GLU LEU ASP ASP VAL ALA ASN SEQRES 2 A 328 LEU MET PHE TYR GLY GLU GLY GLN ILE GLY THR ASN LYS SEQRES 3 A 328 GLN PRO PHE MET PHE ILE PHE ASP THR GLY SER ALA ASN SEQRES 4 A 328 LEU TRP VAL PRO SER VAL ASN CYS ASP SER ILE GLY CYS SEQRES 5 A 328 SER THR LYS HIS LEU TYR ASP ALA SER ALA SER LYS SER SEQRES 6 A 328 TYR GLU LYS ASP GLY THR LYS VAL GLU ILE SER TYR GLY SEQRES 7 A 328 SER GLY THR VAL ARG GLY TYR PHE SER LYS ASP VAL ILE SEQRES 8 A 328 SER LEU GLY ASP LEU SER LEU PRO TYR LYS PHE ILE GLU SEQRES 9 A 328 VAL THR ASP ALA ASP ASP LEU GLU PRO ILE TYR SER GLY SEQRES 10 A 328 SER GLU PHE ASP GLY ILE LEU GLY LEU GLY TRP LYS ASP SEQRES 11 A 328 LEU SER ILE GLY SER ILE ASP PRO VAL VAL VAL GLU LEU SEQRES 12 A 328 LYS LYS GLN ASN LYS ILE ASP ASN ALA LEU PHE THR PHE SEQRES 13 A 328 TYR LEU PRO VAL HIS ASP LYS HIS VAL GLY TYR LEU THR SEQRES 14 A 328 ILE GLY GLY ILE GLU SER ASP PHE TYR GLU GLY PRO LEU SEQRES 15 A 328 THR TYR GLU LYS LEU ASN HIS ASP LEU TYR TRP GLN ILE SEQRES 16 A 328 ASP LEU ASP ILE HIS PHE GLY LYS TYR VAL MET GLN LYS SEQRES 17 A 328 ALA ASN ALA VAL VAL ASP SER GLY THR SER THR ILE THR SEQRES 18 A 328 ALA PRO THR SER PHE LEU ASN LYS PHE PHE ARG ASP MET SEQRES 19 A 328 ASN VAL ILE LYS VAL PRO PHE LEU PRO LEU TYR VAL THR SEQRES 20 A 328 THR CYS ASP ASN ASP ASP LEU PRO THR LEU GLU PHE HIS SEQRES 21 A 328 SER ARG ASN ASN LYS TYR THR LEU GLU PRO GLU PHE TYR SEQRES 22 A 328 MET ASP PRO LEU SER ASP ILE ASP PRO ALA LEU CYS MET SEQRES 23 A 328 LEU TYR ILE LEU PRO VAL ASP ILE ASP ASP ASN THR PHE SEQRES 24 A 328 ILE LEU GLY ASP PRO PHE MET ARG LYS TYR PHE THR VAL SEQRES 25 A 328 PHE ASP TYR GLU LYS GLU SER VAL GLY PHE ALA VAL ALA SEQRES 26 A 328 LYS ASN LEU SEQRES 1 C 6 IVA VAL VAL STA ALA STA SEQRES 1 D 6 IVA VAL VAL STA ALA STA HET IVA C 1 6 HET STA C 4 11 HET STA C 6 12 HET IVA D 349 6 HET STA D 352 11 HET STA D 354 12 HETNAM IVA ISOVALERIC ACID HETNAM STA STATINE FORMUL 3 IVA 2(C5 H10 O2) FORMUL 3 STA 4(C8 H17 N O3) HELIX 1 AA1 SER B 49 LYS B 55 5 7 HELIX 2 AA2 ASP B 59 SER B 63 5 5 HELIX 3 AA3 PRO B 113 SER B 118 1 6 HELIX 4 AA4 TRP B 128 SER B 132 5 5 HELIX 5 AA5 PRO B 138 GLN B 146 1 9 HELIX 6 AA6 GLU B 174 TYR B 178 5 5 HELIX 7 AA7 PRO B 223 ASP B 233 1 11 HELIX 8 AA8 GLU B 269 TYR B 273 1 5 HELIX 9 AA9 GLY B 302 LYS B 308 1 7 HELIX 10 AB1 SER A 49 LYS A 55 5 7 HELIX 11 AB2 ASP A 59 SER A 63 5 5 HELIX 12 AB3 PRO A 113 SER A 118 1 6 HELIX 13 AB4 TRP A 128 SER A 132 5 5 HELIX 14 AB5 PRO A 138 GLN A 146 1 9 HELIX 15 AB6 GLU A 174 TYR A 178 5 5 HELIX 16 AB7 PRO A 223 PHE A 231 1 9 HELIX 17 AB8 GLU A 269 TYR A 273 1 5 HELIX 18 AB9 GLY A 302 LYS A 308 1 7 SHEET 1 AA1 9 GLU B 67 TYR B 77 0 SHEET 2 AA1 9 GLY B 80 LEU B 93 -1 O LYS B 88 N GLU B 67 SHEET 3 AA1 9 MET B 15 ILE B 22 -1 N GLN B 21 O SER B 92 SHEET 4 AA1 9 ILE B 6 VAL B 11 -1 N ASP B 9 O TYR B 17 SHEET 5 AA1 9 GLY B 166 ILE B 170 -1 O LEU B 168 N ILE B 6 SHEET 6 AA1 9 LEU B 153 TYR B 157 -1 N TYR B 157 O TYR B 167 SHEET 7 AA1 9 TYR B 309 ASP B 314 -1 O PHE B 313 N PHE B 154 SHEET 8 AA1 9 SER B 319 VAL B 324 -1 O GLY B 321 N VAL B 312 SHEET 9 AA1 9 THR B 183 LYS B 186 -1 N THR B 183 O PHE B 322 SHEET 1 AA213 GLU B 67 TYR B 77 0 SHEET 2 AA213 GLY B 80 LEU B 93 -1 O LYS B 88 N GLU B 67 SHEET 3 AA213 LEU B 96 ASP B 110 -1 O PHE B 102 N SER B 87 SHEET 4 AA213 LEU B 40 PRO B 43 1 N VAL B 42 O VAL B 105 SHEET 5 AA213 GLY B 122 GLY B 125 -1 O ILE B 123 N TRP B 41 SHEET 6 AA213 GLN B 27 ASP B 34 1 N ILE B 32 O LEU B 124 SHEET 7 AA213 MET B 15 ILE B 22 -1 N GLY B 18 O PHE B 31 SHEET 8 AA213 ILE B 6 VAL B 11 -1 N ASP B 9 O TYR B 17 SHEET 9 AA213 GLY B 166 ILE B 170 -1 O LEU B 168 N ILE B 6 SHEET 10 AA213 LEU B 153 TYR B 157 -1 N TYR B 157 O TYR B 167 SHEET 11 AA213 TYR B 309 ASP B 314 -1 O PHE B 313 N PHE B 154 SHEET 12 AA213 SER B 319 VAL B 324 -1 O GLY B 321 N VAL B 312 SHEET 13 AA213 THR B 183 LYS B 186 -1 N THR B 183 O PHE B 322 SHEET 1 AA3 7 LYS B 265 LEU B 268 0 SHEET 2 AA3 7 LEU B 257 HIS B 260 -1 N PHE B 259 O TYR B 266 SHEET 3 AA3 7 GLN B 194 PHE B 201 -1 N ASP B 198 O HIS B 260 SHEET 4 AA3 7 TYR B 204 VAL B 213 -1 O ALA B 209 N LEU B 197 SHEET 5 AA3 7 THR B 298 LEU B 301 1 O PHE B 299 N VAL B 212 SHEET 6 AA3 7 ILE B 220 ALA B 222 -1 N THR B 221 O ILE B 300 SHEET 7 AA3 7 ILE B 289 PRO B 291 1 O LEU B 290 N ILE B 220 SHEET 1 AA4 4 ILE B 237 LYS B 238 0 SHEET 2 AA4 4 TYR B 245 THR B 248 -1 O VAL B 246 N ILE B 237 SHEET 3 AA4 4 LEU B 284 LEU B 287 -1 O CYS B 285 N THR B 247 SHEET 4 AA4 4 MET B 274 PRO B 276 -1 N ASP B 275 O MET B 286 SHEET 1 AA5 9 GLU A 67 TYR A 77 0 SHEET 2 AA5 9 GLY A 80 LEU A 93 -1 O LYS A 88 N GLU A 67 SHEET 3 AA5 9 MET A 15 ILE A 22 -1 N GLN A 21 O SER A 92 SHEET 4 AA5 9 ILE A 6 VAL A 11 -1 N ASP A 9 O TYR A 17 SHEET 5 AA5 9 GLY A 166 ILE A 170 -1 O LEU A 168 N ILE A 6 SHEET 6 AA5 9 LEU A 153 TYR A 157 -1 N TYR A 157 O TYR A 167 SHEET 7 AA5 9 TYR A 309 ASP A 314 -1 O PHE A 313 N PHE A 154 SHEET 8 AA5 9 SER A 319 VAL A 324 -1 O GLY A 321 N VAL A 312 SHEET 9 AA5 9 THR A 183 LYS A 186 -1 N THR A 183 O PHE A 322 SHEET 1 AA613 GLU A 67 TYR A 77 0 SHEET 2 AA613 GLY A 80 LEU A 93 -1 O LYS A 88 N GLU A 67 SHEET 3 AA613 LEU A 96 ASP A 110 -1 O PHE A 102 N SER A 87 SHEET 4 AA613 LEU A 40 PRO A 43 1 N VAL A 42 O VAL A 105 SHEET 5 AA613 GLY A 122 GLY A 125 -1 O ILE A 123 N TRP A 41 SHEET 6 AA613 GLN A 27 ASP A 34 1 N ILE A 32 O LEU A 124 SHEET 7 AA613 MET A 15 ILE A 22 -1 N GLY A 18 O PHE A 31 SHEET 8 AA613 ILE A 6 VAL A 11 -1 N ASP A 9 O TYR A 17 SHEET 9 AA613 GLY A 166 ILE A 170 -1 O LEU A 168 N ILE A 6 SHEET 10 AA613 LEU A 153 TYR A 157 -1 N TYR A 157 O TYR A 167 SHEET 11 AA613 TYR A 309 ASP A 314 -1 O PHE A 313 N PHE A 154 SHEET 12 AA613 SER A 319 VAL A 324 -1 O GLY A 321 N VAL A 312 SHEET 13 AA613 THR A 183 LYS A 186 -1 N THR A 183 O PHE A 322 SHEET 1 AA7 7 LYS A 265 LEU A 268 0 SHEET 2 AA7 7 LEU A 257 HIS A 260 -1 N PHE A 259 O TYR A 266 SHEET 3 AA7 7 GLN A 194 HIS A 200 -1 N ASP A 198 O HIS A 260 SHEET 4 AA7 7 VAL A 205 VAL A 213 -1 O ALA A 209 N LEU A 197 SHEET 5 AA7 7 THR A 298 LEU A 301 1 O PHE A 299 N VAL A 212 SHEET 6 AA7 7 ILE A 220 ALA A 222 -1 N THR A 221 O ILE A 300 SHEET 7 AA7 7 ILE A 289 PRO A 291 1 O LEU A 290 N ILE A 220 SHEET 1 AA8 3 VAL A 246 THR A 248 0 SHEET 2 AA8 3 LEU A 284 LEU A 287 -1 O CYS A 285 N THR A 247 SHEET 3 AA8 3 MET A 274 PRO A 276 -1 N ASP A 275 O MET A 286 SSBOND 1 CYS B 47 CYS B 52 1555 1555 2.05 SSBOND 2 CYS B 249 CYS B 285 1555 1555 2.04 SSBOND 3 CYS A 47 CYS A 52 1555 1555 2.03 SSBOND 4 CYS A 249 CYS A 285 1555 1555 2.08 LINK C IVA C 1 N VAL C 2 1555 1555 1.34 LINK C VAL C 3 N STA C 4 1555 1555 1.33 LINK C STA C 4 N ALA C 5 1555 1555 1.34 LINK C ALA C 5 N STA C 6 1555 1555 1.34 LINK C IVA D 349 N VAL D 350 1555 1555 1.34 LINK C VAL D 351 N STA D 352 1555 1555 1.35 LINK C STA D 352 N ALA D 353 1555 1555 1.33 LINK C ALA D 353 N STA D 354 1555 1555 1.33 SITE 1 AC1 15 MET A 15 ASP A 34 GLY A 36 SER A 76 SITE 2 AC1 15 TYR A 77 GLY A 78 SER A 79 ILE A 123 SITE 3 AC1 15 TYR A 192 ASP A 214 GLY A 216 THR A 217 SITE 4 AC1 15 SER A 218 LEU A 290 ILE A 294 SITE 1 AC2 16 MET B 15 ASP B 34 GLY B 36 SER B 76 SITE 2 AC2 16 TYR B 77 GLY B 78 SER B 79 ILE B 114 SITE 3 AC2 16 ILE B 123 LEU B 131 TYR B 192 ASP B 214 SITE 4 AC2 16 GLY B 216 THR B 217 SER B 218 LEU B 290 CRYST1 103.420 103.420 123.690 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009669 0.005583 0.000000 0.00000 SCALE2 0.000000 0.011165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008085 0.00000