HEADER HYDROLASE 17-FEB-16 5I77 TITLE CRYSTAL STRUCTURE OF A BETA-1,4-ENDOGLUCANASE FROM ASPERGILLUS NIGER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-1, 4-GLUCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-331; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 GENE: EG1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: P. PASTORIS X33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZAA KEYWDS SUBSTRATE BINDING, ENDOGLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.LI,W.D.LIU,Y.Y.ZHENG,C.C.CHEN,R.T.GUO REVDAT 3 08-NOV-23 5I77 1 HETSYN REVDAT 2 29-JUL-20 5I77 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 21-DEC-16 5I77 0 JRNL AUTH J.YAN,W.LIU,Y.LI,H.L.LAI,Y.ZHENG,J.W.HUANG,C.C.CHEN,Y.CHEN, JRNL AUTH 2 J.JIN,H.LI,R.T.GUO JRNL TITL FUNCTIONAL AND STRUCTURAL ANALYSIS OF PICHIA JRNL TITL 2 PASTORIS-EXPRESSED ASPERGILLUS NIGER 1,4-BETA-ENDOGLUCANASE JRNL REF BIOCHEM. BIOPHYS. RES. V. 475 8 2016 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 27154222 JRNL DOI 10.1016/J.BBRC.2016.05.012 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1952 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2505 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2199 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3399 ; 2.012 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5072 ; 1.124 ; 3.014 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ;13.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;38.905 ;25.520 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;13.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2873 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 589 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 3.011 ; 2.968 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1206 ; 3.002 ; 2.966 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1507 ; 3.674 ; 4.449 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5I77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG600, CA(OAC)2, CACODYLATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.10700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.54800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.54800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.05350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.54800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.54800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.16050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.54800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.54800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.05350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.54800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.54800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.16050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.10700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 NAG A 407 O1 NAG A 408 1.30 REMARK 500 ND2 ASN A 100 O5 NAG A 407 1.69 REMARK 500 C3 NAG A 407 O1 NAG A 408 1.88 REMARK 500 O HOH A 660 O HOH A 673 1.99 REMARK 500 N VAL A 31 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 525 O HOH A 525 7555 1.94 REMARK 500 O HOH A 672 O HOH A 673 5555 2.15 REMARK 500 O HOH A 631 O HOH A 642 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 49 C - N - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 49 -68.53 31.49 REMARK 500 ASP A 87 -85.37 -98.92 REMARK 500 ASN A 158 147.32 -172.58 REMARK 500 ASN A 290 43.32 -140.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 48 PRO A 49 -104.93 REMARK 500 TRP A 300 ALA A 301 -36.28 REMARK 500 PRO A 315 PRO A 316 46.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 300 -13.60 REMARK 500 PRO A 315 14.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE1 REMARK 620 2 GLU A 33 OE2 51.9 REMARK 620 3 PRO A 86 O 34.1 78.4 REMARK 620 4 HOH A 526 O 27.8 72.1 6.7 REMARK 620 5 HOH A 534 O 32.1 75.0 3.7 4.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I79 RELATED DB: PDB REMARK 900 RELATED ID: 5I78 RELATED DB: PDB DBREF1 5I77 A 31 331 UNP A0A023UH08_ASPNG DBREF2 5I77 A A0A023UH08 31 331 SEQADV 5I77 LEU A 332 UNP A0A023UH0 EXPRESSION TAG SEQRES 1 A 302 VAL PHE GLU TRP PHE GLY SER ASN GLU SER GLY ALA GLU SEQRES 2 A 302 PHE GLY THR ASN ILE PRO GLY VAL TRP GLY THR ASP TYR SEQRES 3 A 302 ILE PHE PRO ASP PRO SER ALA ILE SER THR LEU ILE ASP SEQRES 4 A 302 LYS GLY MET ASN PHE PHE ARG VAL GLN PHE MET MET GLU SEQRES 5 A 302 ARG LEU LEU PRO ASP SER MET THR GLY SER TYR ASP GLU SEQRES 6 A 302 GLU TYR LEU ALA ASN LEU THR THR VAL ILE LYS ALA VAL SEQRES 7 A 302 THR ASP GLY GLY ALA HIS ALA LEU VAL ASP PRO HIS ASN SEQRES 8 A 302 TYR GLY ARG TYR ASN GLY GLU ILE ILE SER SER THR SER SEQRES 9 A 302 ASP PHE GLN THR PHE TRP GLU ASN LEU ALA GLY GLN TYR SEQRES 10 A 302 LYS ASP ASN ASP LEU VAL MET PHE ASP THR ASN ASN GLU SEQRES 11 A 302 TYR HIS ASP MET ASP GLN ASP LEU VAL LEU ASN LEU ASN SEQRES 12 A 302 GLN ALA ALA ILE ASN GLY ILE ARG ALA ALA GLY ALA THR SEQRES 13 A 302 SER GLN TYR ILE PHE VAL GLU GLY ASN SER TRP THR GLY SEQRES 14 A 302 ALA TRP THR TRP VAL ASP VAL ASN ASP ASN MET LYS ASN SEQRES 15 A 302 LEU THR ASP PRO GLU ASP LYS ILE VAL TYR GLU MET HIS SEQRES 16 A 302 GLN TYR LEU ASP SER ASP GLY SER GLY THR SER GLU THR SEQRES 17 A 302 CYS VAL SER GLU THR ILE GLY LYS GLU ARG VAL THR GLU SEQRES 18 A 302 ALA THR GLN TRP LEU LYS ASP ASN LYS LYS VAL GLY PHE SEQRES 19 A 302 ILE GLY GLU TYR ALA GLY GLY SER ASN ASP VAL CYS ARG SEQRES 20 A 302 SER ALA VAL SER GLY MET LEU GLU TYR MET ALA ASN ASN SEQRES 21 A 302 THR ASP VAL TRP LYS GLY ALA SER TRP TRP ALA ALA GLY SEQRES 22 A 302 PRO TRP TRP GLY ASP TYR ILE PHE SER LEU GLU PRO PRO SEQRES 23 A 302 ASP GLY THR ALA TYR THR GLY MET LEU ASP ILE LEU GLU SEQRES 24 A 302 ALA TYR LEU HET CA A 401 1 HET PGE A 402 10 HET PEG A 403 7 HET PEG A 404 7 HET PEG A 405 7 HET PEG A 406 7 HET NAG A 407 15 HET NAG A 408 15 HETNAM CA CALCIUM ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 CA CA 2+ FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG 4(C4 H10 O3) FORMUL 8 NAG 2(C8 H15 N O6) FORMUL 10 HOH *174(H2 O) HELIX 1 AA1 ASP A 60 LYS A 70 1 11 HELIX 2 AA2 MET A 80 LEU A 85 1 6 HELIX 3 AA3 ASP A 94 GLY A 111 1 18 HELIX 4 AA4 SER A 132 LYS A 148 1 17 HELIX 5 AA5 ASP A 165 ALA A 183 1 19 HELIX 6 AA6 THR A 202 ASN A 207 1 6 HELIX 7 AA7 ASP A 208 LEU A 213 5 6 HELIX 8 AA8 THR A 243 ASN A 259 1 17 HELIX 9 AA9 ASN A 273 ASN A 289 1 17 HELIX 10 AB1 GLY A 318 MET A 324 1 7 HELIX 11 AB2 MET A 324 ALA A 330 1 7 SHEET 1 AA1 9 TRP A 34 GLU A 39 0 SHEET 2 AA1 9 PHE A 74 PHE A 79 1 O ARG A 76 N GLU A 39 SHEET 3 AA1 9 HIS A 114 PRO A 119 1 O LEU A 116 N VAL A 77 SHEET 4 AA1 9 VAL A 153 ASP A 156 1 O MET A 154 N ALA A 115 SHEET 5 AA1 9 ILE A 190 GLU A 193 1 O PHE A 191 N PHE A 155 SHEET 6 AA1 9 ILE A 220 TYR A 227 1 O VAL A 221 N VAL A 192 SHEET 7 AA1 9 GLY A 263 ALA A 269 1 O GLU A 267 N GLN A 226 SHEET 8 AA1 9 TRP A 294 ALA A 302 1 O LYS A 295 N GLY A 263 SHEET 9 AA1 9 TRP A 34 GLU A 39 1 N ASN A 38 O TRP A 299 SHEET 1 AA2 2 ARG A 124 TYR A 125 0 SHEET 2 AA2 2 GLU A 128 ILE A 129 -1 O GLU A 128 N TYR A 125 SSBOND 1 CYS A 239 CYS A 276 1555 1555 2.07 LINK OE1 GLU A 33 CA CA A 401 1555 3555 2.48 LINK OE2 GLU A 33 CA CA A 401 1555 3555 2.62 LINK O PRO A 86 CA CA A 401 1555 1555 2.32 LINK CA CA A 401 O HOH A 526 1555 1555 2.54 LINK CA CA A 401 O HOH A 534 1555 1555 2.17 CRYST1 63.096 63.096 148.214 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015849 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006747 0.00000