HEADER HYDROLASE 17-FEB-16 5I78 TITLE CRYSTAL STRUCTURE OF A BETA-1,4-ENDOGLUCANASE FROM ASPERGILLUS NIGER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-1, 4-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 31-331; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 GENE: EG1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: P. PASTORIS X33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZAA KEYWDS SUBSTRATE BINDING, ENDOGLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.D.LIU,J.J.YAN,Y.J.LI,Y.Y.ZHENG,C.C.CHEN,R.T.GUO REVDAT 3 08-NOV-23 5I78 1 HETSYN REVDAT 2 29-JUL-20 5I78 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 21-DEC-16 5I78 0 JRNL AUTH J.YAN,W.LIU,Y.LI,H.L.LAI,Y.ZHENG,J.W.HUANG,C.C.CHEN,Y.CHEN, JRNL AUTH 2 J.JIN,H.LI,R.T.GUO JRNL TITL FUNCTIONAL AND STRUCTURAL ANALYSIS OF PICHIA JRNL TITL 2 PASTORIS-EXPRESSED ASPERGILLUS NIGER 1,4-BETA-ENDOGLUCANASE JRNL REF BIOCHEM. BIOPHYS. RES. V. 475 8 2016 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 27154222 JRNL DOI 10.1016/J.BBRC.2016.05.012 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 78792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 271 REMARK 3 BIN FREE R VALUE : 0.1960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 591 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5052 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4425 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6854 ; 2.179 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10179 ; 1.079 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 6.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;38.654 ;25.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;13.456 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 716 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5798 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1190 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2438 ; 1.572 ; 1.168 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2437 ; 1.543 ; 1.166 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3044 ; 2.284 ; 1.751 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5I78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG600, CA(OAC)2, CACODYLATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.63650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.41100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.63650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.41100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 562 O HOH A 748 1.37 REMARK 500 O HOH A 734 O HOH A 748 1.54 REMARK 500 O HOH A 752 O HOH A 769 1.74 REMARK 500 O HOH A 506 O HOH A 508 1.77 REMARK 500 OD1 ASP B 167 O HOH B 501 1.81 REMARK 500 O HOH B 752 O HOH B 776 1.84 REMARK 500 O HOH A 733 O HOH A 757 1.86 REMARK 500 O HOH B 540 O HOH B 611 1.89 REMARK 500 O4 NAG A 404 O HOH A 501 2.01 REMARK 500 O HOH B 745 O HOH B 759 2.01 REMARK 500 O HOH A 507 O HOH A 606 2.04 REMARK 500 O HOH A 654 O HOH A 751 2.05 REMARK 500 O HOH A 735 O HOH A 748 2.06 REMARK 500 O HOH A 672 O HOH A 751 2.08 REMARK 500 OH TYR B 331 O HOH B 502 2.10 REMARK 500 O1 PGE B 405 O1 PGE B 407 2.10 REMARK 500 OE1 GLU B 141 O HOH B 503 2.14 REMARK 500 O HOH B 764 O HOH B 774 2.18 REMARK 500 O HOH A 517 O HOH A 761 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH B 643 1554 1.71 REMARK 500 O HOH A 662 O HOH B 683 1554 1.81 REMARK 500 O HOH A 592 O HOH A 672 4555 1.87 REMARK 500 O HOH B 648 O HOH B 756 1565 2.15 REMARK 500 OE2 GLU A 237 OE2 GLU A 237 2655 2.16 REMARK 500 O HOH A 575 O HOH B 507 4546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 39 CD GLU A 39 OE2 0.072 REMARK 500 GLU A 314 CD GLU A 314 OE1 0.067 REMARK 500 TYR B 147 CE1 TYR B 147 CZ 0.089 REMARK 500 SER B 298 CB SER B 298 OG -0.092 REMARK 500 TYR B 309 CZ TYR B 309 CE2 -0.083 REMARK 500 TYR B 331 CE1 TYR B 331 CZ -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 94 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 118 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 GLU B 29 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP B 69 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 124 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 MET B 154 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 VAL B 206 CG1 - CB - CG2 ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP B 308 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 158 144.83 -178.58 REMARK 500 ASN A 290 49.05 -141.06 REMARK 500 ASN B 158 147.34 -172.67 REMARK 500 ASN B 290 41.90 -141.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 29 PHE B 30 125.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 804 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH B 805 DISTANCE = 8.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE1 REMARK 620 2 GLU A 29 OE2 50.3 REMARK 620 3 LEU A 332 O 89.9 86.3 REMARK 620 4 LEU A 332 OXT 78.9 114.6 51.2 REMARK 620 5 HOH A 717 O 128.9 79.2 79.1 124.8 REMARK 620 6 ASP B 69 O 94.6 82.4 161.0 147.9 83.7 REMARK 620 7 ASP B 69 OD1 75.8 119.9 122.0 70.9 150.1 77.0 REMARK 620 8 HOH B 738 O 154.6 155.0 90.0 81.2 75.9 93.8 82.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE2 REMARK 620 2 NAG A 405 O7 94.7 REMARK 620 3 HOH A 620 O 96.7 3.0 REMARK 620 4 HOH A 628 O 93.8 1.6 3.1 REMARK 620 5 HOH A 734 O 95.3 3.4 1.8 2.6 REMARK 620 6 HOH A 747 O 94.7 4.6 3.2 3.4 1.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 329 O REMARK 620 2 LEU A 332 OXT 83.8 REMARK 620 3 HOH A 639 O 92.9 78.9 REMARK 620 4 HOH A 736 O 94.4 87.5 163.8 REMARK 620 5 ASP B 69 OD1 156.8 73.4 79.2 88.5 REMARK 620 6 ASP B 69 OD2 152.7 122.9 87.6 92.4 49.6 REMARK 620 7 HOH B 692 O 80.7 162.8 94.4 101.0 121.3 72.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I79 RELATED DB: PDB REMARK 900 RELATED ID: 5I77 RELATED DB: PDB DBREF1 5I78 A 31 331 UNP A0A023UH08_ASPNG DBREF2 5I78 A A0A023UH08 31 331 DBREF1 5I78 B 31 331 UNP A0A023UH08_ASPNG DBREF2 5I78 B A0A023UH08 31 331 SEQADV 5I78 ALA A 28 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 GLU A 29 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 PHE A 30 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 ALA A 267 UNP A0A023UH0 GLU 267 ENGINEERED MUTATION SEQADV 5I78 LEU A 332 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 ALA B 28 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 GLU B 29 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 PHE B 30 UNP A0A023UH0 EXPRESSION TAG SEQADV 5I78 ALA B 267 UNP A0A023UH0 GLU 267 ENGINEERED MUTATION SEQADV 5I78 LEU B 332 UNP A0A023UH0 EXPRESSION TAG SEQRES 1 A 305 ALA GLU PHE VAL PHE GLU TRP PHE GLY SER ASN GLU SER SEQRES 2 A 305 GLY ALA GLU PHE GLY THR ASN ILE PRO GLY VAL TRP GLY SEQRES 3 A 305 THR ASP TYR ILE PHE PRO ASP PRO SER ALA ILE SER THR SEQRES 4 A 305 LEU ILE ASP LYS GLY MET ASN PHE PHE ARG VAL GLN PHE SEQRES 5 A 305 MET MET GLU ARG LEU LEU PRO ASP SER MET THR GLY SER SEQRES 6 A 305 TYR ASP GLU GLU TYR LEU ALA ASN LEU THR THR VAL ILE SEQRES 7 A 305 LYS ALA VAL THR ASP GLY GLY ALA HIS ALA LEU VAL ASP SEQRES 8 A 305 PRO HIS ASN TYR GLY ARG TYR ASN GLY GLU ILE ILE SER SEQRES 9 A 305 SER THR SER ASP PHE GLN THR PHE TRP GLU ASN LEU ALA SEQRES 10 A 305 GLY GLN TYR LYS ASP ASN ASP LEU VAL MET PHE ASP THR SEQRES 11 A 305 ASN ASN GLU TYR HIS ASP MET ASP GLN ASP LEU VAL LEU SEQRES 12 A 305 ASN LEU ASN GLN ALA ALA ILE ASN GLY ILE ARG ALA ALA SEQRES 13 A 305 GLY ALA THR SER GLN TYR ILE PHE VAL GLU GLY ASN SER SEQRES 14 A 305 TRP THR GLY ALA TRP THR TRP VAL ASP VAL ASN ASP ASN SEQRES 15 A 305 MET LYS ASN LEU THR ASP PRO GLU ASP LYS ILE VAL TYR SEQRES 16 A 305 GLU MET HIS GLN TYR LEU ASP SER ASP GLY SER GLY THR SEQRES 17 A 305 SER GLU THR CYS VAL SER GLU THR ILE GLY LYS GLU ARG SEQRES 18 A 305 VAL THR GLU ALA THR GLN TRP LEU LYS ASP ASN LYS LYS SEQRES 19 A 305 VAL GLY PHE ILE GLY ALA TYR ALA GLY GLY SER ASN ASP SEQRES 20 A 305 VAL CYS ARG SER ALA VAL SER GLY MET LEU GLU TYR MET SEQRES 21 A 305 ALA ASN ASN THR ASP VAL TRP LYS GLY ALA SER TRP TRP SEQRES 22 A 305 ALA ALA GLY PRO TRP TRP GLY ASP TYR ILE PHE SER LEU SEQRES 23 A 305 GLU PRO PRO ASP GLY THR ALA TYR THR GLY MET LEU ASP SEQRES 24 A 305 ILE LEU GLU ALA TYR LEU SEQRES 1 B 305 ALA GLU PHE VAL PHE GLU TRP PHE GLY SER ASN GLU SER SEQRES 2 B 305 GLY ALA GLU PHE GLY THR ASN ILE PRO GLY VAL TRP GLY SEQRES 3 B 305 THR ASP TYR ILE PHE PRO ASP PRO SER ALA ILE SER THR SEQRES 4 B 305 LEU ILE ASP LYS GLY MET ASN PHE PHE ARG VAL GLN PHE SEQRES 5 B 305 MET MET GLU ARG LEU LEU PRO ASP SER MET THR GLY SER SEQRES 6 B 305 TYR ASP GLU GLU TYR LEU ALA ASN LEU THR THR VAL ILE SEQRES 7 B 305 LYS ALA VAL THR ASP GLY GLY ALA HIS ALA LEU VAL ASP SEQRES 8 B 305 PRO HIS ASN TYR GLY ARG TYR ASN GLY GLU ILE ILE SER SEQRES 9 B 305 SER THR SER ASP PHE GLN THR PHE TRP GLU ASN LEU ALA SEQRES 10 B 305 GLY GLN TYR LYS ASP ASN ASP LEU VAL MET PHE ASP THR SEQRES 11 B 305 ASN ASN GLU TYR HIS ASP MET ASP GLN ASP LEU VAL LEU SEQRES 12 B 305 ASN LEU ASN GLN ALA ALA ILE ASN GLY ILE ARG ALA ALA SEQRES 13 B 305 GLY ALA THR SER GLN TYR ILE PHE VAL GLU GLY ASN SER SEQRES 14 B 305 TRP THR GLY ALA TRP THR TRP VAL ASP VAL ASN ASP ASN SEQRES 15 B 305 MET LYS ASN LEU THR ASP PRO GLU ASP LYS ILE VAL TYR SEQRES 16 B 305 GLU MET HIS GLN TYR LEU ASP SER ASP GLY SER GLY THR SEQRES 17 B 305 SER GLU THR CYS VAL SER GLU THR ILE GLY LYS GLU ARG SEQRES 18 B 305 VAL THR GLU ALA THR GLN TRP LEU LYS ASP ASN LYS LYS SEQRES 19 B 305 VAL GLY PHE ILE GLY ALA TYR ALA GLY GLY SER ASN ASP SEQRES 20 B 305 VAL CYS ARG SER ALA VAL SER GLY MET LEU GLU TYR MET SEQRES 21 B 305 ALA ASN ASN THR ASP VAL TRP LYS GLY ALA SER TRP TRP SEQRES 22 B 305 ALA ALA GLY PRO TRP TRP GLY ASP TYR ILE PHE SER LEU SEQRES 23 B 305 GLU PRO PRO ASP GLY THR ALA TYR THR GLY MET LEU ASP SEQRES 24 B 305 ILE LEU GLU ALA TYR LEU HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET NAG A 404 14 HET NAG A 405 14 HET PGE A 406 10 HET PGE B 401 10 HET PGE B 402 10 HET NAG B 403 14 HET PGE B 404 10 HET PGE B 405 10 HET PGE B 406 10 HET PGE B 407 10 HET NAG B 408 14 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CA 3(CA 2+) FORMUL 6 NAG 4(C8 H15 N O6) FORMUL 8 PGE 7(C6 H14 O4) FORMUL 17 HOH *591(H2 O) HELIX 1 AA1 ASP A 60 LYS A 70 1 11 HELIX 2 AA2 MET A 80 LEU A 85 1 6 HELIX 3 AA3 ASP A 94 GLY A 111 1 18 HELIX 4 AA4 SER A 132 LYS A 148 1 17 HELIX 5 AA5 ASP A 165 ALA A 183 1 19 HELIX 6 AA6 THR A 202 ASN A 207 1 6 HELIX 7 AA7 ASP A 208 LEU A 213 5 6 HELIX 8 AA8 THR A 243 LYS A 260 1 18 HELIX 9 AA9 ASN A 273 ASN A 289 1 17 HELIX 10 AB1 GLY A 318 GLU A 329 1 12 HELIX 11 AB2 ALA A 330 LEU A 332 5 3 HELIX 12 AB3 ASP B 60 GLY B 71 1 12 HELIX 13 AB4 MET B 80 LEU B 85 1 6 HELIX 14 AB5 ASP B 94 GLY B 111 1 18 HELIX 15 AB6 SER B 132 LYS B 148 1 17 HELIX 16 AB7 ASP B 165 ALA B 183 1 19 HELIX 17 AB8 THR B 202 ASN B 207 1 6 HELIX 18 AB9 ASP B 208 LEU B 213 5 6 HELIX 19 AC1 THR B 243 LYS B 260 1 18 HELIX 20 AC2 ASN B 273 ASN B 289 1 17 HELIX 21 AC3 GLY B 318 MET B 324 1 7 HELIX 22 AC4 MET B 324 ALA B 330 1 7 SHEET 1 AA1 9 TRP A 34 GLU A 39 0 SHEET 2 AA1 9 PHE A 74 PHE A 79 1 O ARG A 76 N GLU A 39 SHEET 3 AA1 9 HIS A 114 PRO A 119 1 O LEU A 116 N PHE A 75 SHEET 4 AA1 9 VAL A 153 ASP A 156 1 O MET A 154 N VAL A 117 SHEET 5 AA1 9 ILE A 190 GLU A 193 1 O PHE A 191 N PHE A 155 SHEET 6 AA1 9 ILE A 220 TYR A 227 1 O GLU A 223 N VAL A 192 SHEET 7 AA1 9 GLY A 263 ALA A 269 1 O ALA A 267 N GLN A 226 SHEET 8 AA1 9 TRP A 294 ALA A 302 1 O TRP A 300 N TYR A 268 SHEET 9 AA1 9 TRP A 34 GLU A 39 1 N ASN A 38 O TRP A 299 SHEET 1 AA2 2 ARG A 124 TYR A 125 0 SHEET 2 AA2 2 GLU A 128 ILE A 129 -1 O GLU A 128 N TYR A 125 SHEET 1 AA3 9 TRP B 34 GLU B 39 0 SHEET 2 AA3 9 PHE B 74 PHE B 79 1 O ARG B 76 N GLU B 39 SHEET 3 AA3 9 HIS B 114 PRO B 119 1 O LEU B 116 N PHE B 75 SHEET 4 AA3 9 VAL B 153 ASP B 156 1 O MET B 154 N ALA B 115 SHEET 5 AA3 9 ILE B 190 GLU B 193 1 O PHE B 191 N PHE B 155 SHEET 6 AA3 9 ILE B 220 TYR B 227 1 O GLU B 223 N VAL B 192 SHEET 7 AA3 9 GLY B 263 ALA B 269 1 O PHE B 264 N MET B 224 SHEET 8 AA3 9 TRP B 294 ALA B 302 1 O TRP B 300 N TYR B 268 SHEET 9 AA3 9 TRP B 34 GLU B 39 1 N ASN B 38 O TRP B 299 SHEET 1 AA4 2 ARG B 124 TYR B 125 0 SHEET 2 AA4 2 GLU B 128 ILE B 129 -1 O GLU B 128 N TYR B 125 SSBOND 1 CYS A 239 CYS A 276 1555 1555 2.09 SSBOND 2 CYS B 239 CYS B 276 1555 1555 2.12 LINK ND2 ASN A 100 C1 NAG A 404 1555 1555 1.53 LINK ND2 ASN A 289 C1 NAG A 405 1555 1555 1.47 LINK ND2 ASN B 100 C1 NAG B 403 1555 1555 1.51 LINK ND2 ASN B 289 C1 NAG B 408 1555 1555 1.48 LINK OE1 GLU A 29 CA CA A 401 1555 1555 2.45 LINK OE2 GLU A 29 CA CA A 401 1555 1555 2.62 LINK OE2 GLU A 95 CA CA A 403 1555 1545 2.47 LINK O GLU A 329 CA CA A 402 1555 1555 2.40 LINK O LEU A 332 CA CA A 401 1555 1555 2.38 LINK OXT LEU A 332 CA CA A 401 1555 1555 2.56 LINK OXT LEU A 332 CA CA A 402 1555 1555 2.42 LINK CA CA A 401 O HOH A 717 1555 1555 2.35 LINK CA CA A 401 O ASP B 69 1555 1555 2.35 LINK CA CA A 401 OD1 ASP B 69 1555 1555 2.41 LINK CA CA A 401 O HOH B 738 1555 1555 2.38 LINK CA CA A 402 O HOH A 639 1555 1555 2.45 LINK CA CA A 402 O HOH A 736 1555 1555 2.32 LINK CA CA A 402 OD1 ASP B 69 1555 1555 2.41 LINK CA CA A 402 OD2 ASP B 69 1555 1555 2.63 LINK CA CA A 402 O HOH B 692 1555 1555 2.29 LINK CA CA A 403 O7 NAG A 405 1555 1555 2.31 LINK CA CA A 403 O HOH A 620 1555 1555 2.22 LINK CA CA A 403 O HOH A 628 1555 1565 2.21 LINK CA CA A 403 O HOH A 734 1555 1555 2.44 LINK CA CA A 403 O HOH A 747 1555 1565 2.21 CISPEP 1 ILE A 48 PRO A 49 0 3.08 CISPEP 2 TRP A 300 ALA A 301 0 3.67 CISPEP 3 PRO A 315 PRO A 316 0 3.15 CISPEP 4 ILE B 48 PRO B 49 0 -1.56 CISPEP 5 TRP B 300 ALA B 301 0 0.94 CISPEP 6 PRO B 315 PRO B 316 0 5.72 CRYST1 161.273 50.822 75.310 90.00 95.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006201 0.000000 0.000552 0.00000 SCALE2 0.000000 0.019677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013331 0.00000