HEADER RNA BINDING PROTEIN/RNA 20-FEB-16 5I9D TITLE CRYSTAL STRUCTURE OF DESIGNED PENTATRICOPEPTIDE REPEAT PROTEIN DPPR- TITLE 2 U8A2 IN COMPLEX WITH ITS TARGET RNA U8A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTATRICOPEPTIDE REPEAT PROTEIN DPPR-U8A2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'- COMPND 7 R(*GP*GP*GP*G*UP*UP*UP*UP*AP*AP*UP*UP*UP*UP*CP*CP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS RNA BINDING PROTEIN, SINGLE-STRANDED RNA, DESIGNER PENTATRICOPEPTIDE KEYWDS 2 REPEAT PROTEIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.SHEN,D.ZHANG,Z.GUAN,T.ZOU,P.YIN REVDAT 3 08-NOV-23 5I9D 1 REMARK REVDAT 2 25-DEC-19 5I9D 1 JRNL REMARK REVDAT 1 27-APR-16 5I9D 0 JRNL AUTH C.SHEN,D.ZHANG,Z.GUAN,Y.LIU,Z.YANG,Y.YANG,X.WANG,Q.WANG, JRNL AUTH 2 Q.ZHANG,S.FAN,T.ZOU,P.YIN JRNL TITL STRUCTURAL BASIS FOR SPECIFIC SINGLE-STRANDED RNA JRNL TITL 2 RECOGNITION BY DESIGNER PENTATRICOPEPTIDE REPEAT PROTEINS. JRNL REF NAT COMMUN V. 7 11285 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27088764 JRNL DOI 10.1038/NCOMMS11285 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0891 - 4.4373 1.00 2733 162 0.2841 0.3009 REMARK 3 2 4.4373 - 3.5224 1.00 2620 145 0.2317 0.2338 REMARK 3 3 3.5224 - 3.0773 1.00 2586 128 0.2742 0.3659 REMARK 3 4 3.0773 - 2.7960 1.00 2585 141 0.2810 0.3070 REMARK 3 5 2.7960 - 2.5956 0.99 2541 128 0.2794 0.3042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3022 REMARK 3 ANGLE : 1.789 4098 REMARK 3 CHIRALITY : 0.104 504 REMARK 3 PLANARITY : 0.008 474 REMARK 3 DIHEDRAL : 19.442 1198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.6627 -1.1204 -28.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.2478 REMARK 3 T33: 0.3099 T12: -0.0021 REMARK 3 T13: -0.0158 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: -0.0736 L22: 0.6476 REMARK 3 L33: 1.7371 L12: -0.1091 REMARK 3 L13: -0.0772 L23: 0.5238 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: -0.0347 S13: 0.0321 REMARK 3 S21: 0.0199 S22: 0.0416 S23: 0.0038 REMARK 3 S31: 0.0814 S32: -0.2067 S33: -0.0095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9784 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13826 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, ETHYL ACETATE,D-(+)-GLUCOSE REMARK 280 MONOHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.27300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.94950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.94950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.27300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 VAL A 16 REMARK 465 ARG A 17 REMARK 465 ALA A 18 REMARK 465 TYR A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 VAL A 22 REMARK 465 LEU A 23 REMARK 465 HIS A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 31 REMARK 465 TYR A 32 REMARK 465 GLU A 33 REMARK 465 ARG A 34 REMARK 465 ALA A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 LEU A 38 REMARK 465 PHE A 39 REMARK 465 ALA A 40 REMARK 465 GLU A 41 REMARK 465 ARG A 44 REMARK 465 GLN A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 251 REMARK 465 VAL A 253 REMARK 465 GLU A 254 REMARK 465 VAL A 288 REMARK 465 GLU A 289 REMARK 465 LYS A 381 REMARK 465 SER A 410 REMARK 465 CYS A 412 REMARK 465 ARG A 413 REMARK 465 ALA A 414 REMARK 465 LYS A 415 REMARK 465 ARG A 416 REMARK 465 PHE A 417 REMARK 465 GLU A 418 REMARK 465 GLU A 419 REMARK 465 ALA A 420 REMARK 465 ARG A 421 REMARK 465 GLY A 422 REMARK 465 PHE A 423 REMARK 465 LEU A 424 REMARK 465 SER A 425 REMARK 465 GLU A 426 REMARK 465 VAL A 427 REMARK 465 SER A 428 REMARK 465 GLU A 429 REMARK 465 THR A 430 REMARK 465 ASP A 431 REMARK 465 LEU A 432 REMARK 465 ASP A 433 REMARK 465 PHE A 434 REMARK 465 ASP A 435 REMARK 465 LYS A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 LEU A 439 REMARK 465 GLU A 440 REMARK 465 ALA A 441 REMARK 465 TYR A 442 REMARK 465 ILE A 443 REMARK 465 GLU A 444 REMARK 465 ASP A 445 REMARK 465 ALA A 446 REMARK 465 GLN A 447 REMARK 465 PHE A 448 REMARK 465 GLY A 449 REMARK 465 ARG A 450 REMARK 465 LEU A 451 REMARK 465 GLU A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 G B -8 REMARK 465 G B -7 REMARK 465 G B -6 REMARK 465 G B -5 REMARK 465 C B 7 REMARK 465 C B 8 REMARK 465 C B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 U B -4 P OP1 OP2 O5' C5' C4' O4' REMARK 470 U B -4 C2' O2' C1' N1 C2 O2 N3 REMARK 470 U B -4 C4 O4 C5 C6 REMARK 470 C B 6 N1 C2 O2 N3 C4 N4 C5 REMARK 470 C B 6 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL A 407 O HOH A 501 1.84 REMARK 500 O ASP A 208 O HOH A 502 1.85 REMARK 500 CA GLU A 209 O HOH A 502 1.93 REMARK 500 C GLU A 209 O HOH A 502 1.93 REMARK 500 OE2 GLU A 114 O HOH A 503 1.95 REMARK 500 O VAL A 407 O HOH A 504 1.95 REMARK 500 O HOH A 524 O HOH A 531 2.03 REMARK 500 O MET A 252 O HOH A 505 2.04 REMARK 500 O THR A 403 O HOH A 501 2.08 REMARK 500 O HOH A 510 O HOH A 530 2.09 REMARK 500 NH2 ARG A 405 O HOH A 506 2.10 REMARK 500 OH TYR A 369 O HOH A 507 2.12 REMARK 500 CB VAL A 407 O HOH A 501 2.13 REMARK 500 O HOH A 514 O HOH A 522 2.14 REMARK 500 NZ LYS A 238 O HOH A 508 2.14 REMARK 500 OD2 ASP A 269 O HOH A 509 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 212 O LYS A 360 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U B 2 O3' U B 3 P -0.078 REMARK 500 U B 3 O3' U B 4 P -0.086 REMARK 500 U B 4 O3' U B 5 P -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -168.49 -74.64 REMARK 500 ALA A 99 13.04 -67.10 REMARK 500 LYS A 101 64.59 -109.87 REMARK 500 ASP A 120 -165.58 -107.35 REMARK 500 ASP A 190 -163.81 -118.53 REMARK 500 LYS A 206 56.39 -90.76 REMARK 500 LYS A 241 65.63 -107.53 REMARK 500 ASP A 295 -159.97 -121.46 REMARK 500 ASP A 330 -162.44 -78.17 REMARK 500 LYS A 346 73.91 -113.34 REMARK 500 LYS A 360 -153.49 -75.71 REMARK 500 PRO A 364 -176.32 -66.94 REMARK 500 ALA A 379 33.44 -79.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 534 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 7.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I9F RELATED DB: PDB REMARK 900 RELATED ID: 5I9G RELATED DB: PDB REMARK 900 RELATED ID: 5I9H RELATED DB: PDB DBREF 5I9D A 2 460 PDB 5I9D 5I9D 2 460 DBREF 5I9D B -8 9 PDB 5I9D 5I9D -8 9 SEQRES 1 A 460 ALA LEU LEU ASP GLU THR PRO LEU PRO PRO GLY SER ARG SEQRES 2 A 460 LEU ASP VAL ARG ALA TYR THR THR VAL LEU HIS ALA LEU SEQRES 3 A 460 SER ARG ALA GLY ARG TYR GLU ARG ALA LEU GLU LEU PHE SEQRES 4 A 460 ALA GLU LEU ARG ARG GLN GLY VAL ALA PRO THR VAL VAL SEQRES 5 A 460 THR TYR ASN THR LEU ILE ASP GLY LEU CYS LYS ALA GLY SEQRES 6 A 460 LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU GLU MET VAL SEQRES 7 A 460 GLU LYS GLY ILE LYS PRO ASP VAL VAL THR TYR ASN THR SEQRES 8 A 460 LEU ILE ASP GLY LEU CYS LYS ALA GLY LYS LEU ASP GLU SEQRES 9 A 460 ALA LEU LYS LEU PHE GLU GLU MET VAL GLU LYS GLY ILE SEQRES 10 A 460 LYS PRO ASP VAL VAL THR TYR ASN THR LEU ILE ASP GLY SEQRES 11 A 460 LEU CYS LYS ALA GLY LYS LEU ASP GLU ALA LEU LYS LEU SEQRES 12 A 460 PHE GLU GLU MET VAL GLU LYS GLY ILE LYS PRO ASP VAL SEQRES 13 A 460 VAL THR TYR ASN THR LEU ILE ASP GLY LEU CYS LYS ALA SEQRES 14 A 460 GLY LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU GLU MET SEQRES 15 A 460 VAL GLU LYS GLY ILE LYS PRO ASP VAL VAL THR TYR SER SEQRES 16 A 460 THR LEU ILE ASP GLY LEU CYS LYS ALA GLY LYS LEU ASP SEQRES 17 A 460 GLU ALA LEU LYS LEU PHE GLU GLU MET VAL GLU LYS GLY SEQRES 18 A 460 ILE LYS PRO ASN VAL VAL THR TYR SER THR LEU ILE ASP SEQRES 19 A 460 GLY LEU CYS LYS ALA GLY LYS LEU ASP GLU ALA LEU LYS SEQRES 20 A 460 LEU PHE GLU GLU MET VAL GLU LYS GLY ILE LYS PRO ASN SEQRES 21 A 460 VAL VAL THR TYR ASN THR LEU ILE ASP GLY LEU CYS LYS SEQRES 22 A 460 ALA GLY LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU GLU SEQRES 23 A 460 MET VAL GLU LYS GLY ILE LYS PRO ASP VAL VAL THR TYR SEQRES 24 A 460 ASN THR LEU ILE ASP GLY LEU CYS LYS ALA GLY LYS LEU SEQRES 25 A 460 ASP GLU ALA LEU LYS LEU PHE GLU GLU MET VAL GLU LYS SEQRES 26 A 460 GLY ILE LYS PRO ASP VAL VAL THR TYR ASN THR LEU ILE SEQRES 27 A 460 ASP GLY LEU CYS LYS ALA GLY LYS LEU ASP GLU ALA LEU SEQRES 28 A 460 LYS LEU PHE GLU GLU MET VAL GLU LYS GLY ILE LYS PRO SEQRES 29 A 460 ASP VAL VAL THR TYR ASN THR LEU ILE ASP GLY LEU CYS SEQRES 30 A 460 LYS ALA GLY LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU SEQRES 31 A 460 GLU MET VAL GLU LYS GLY ILE LYS PRO ASP GLU LEU THR SEQRES 32 A 460 TYR ARG ARG VAL VAL GLU SER TYR CYS ARG ALA LYS ARG SEQRES 33 A 460 PHE GLU GLU ALA ARG GLY PHE LEU SER GLU VAL SER GLU SEQRES 34 A 460 THR ASP LEU ASP PHE ASP LYS LYS ALA LEU GLU ALA TYR SEQRES 35 A 460 ILE GLU ASP ALA GLN PHE GLY ARG LEU GLU HIS HIS HIS SEQRES 36 A 460 HIS HIS HIS HIS HIS SEQRES 1 B 18 G G G G U U U U A A U U U SEQRES 2 B 18 U C C C C FORMUL 3 HOH *41(H2 O) HELIX 1 AA1 THR A 50 LYS A 63 1 14 HELIX 2 AA2 LYS A 66 GLU A 79 1 14 HELIX 3 AA3 ASP A 85 ALA A 99 1 15 HELIX 4 AA4 LYS A 101 GLY A 116 1 16 HELIX 5 AA5 ASP A 120 ALA A 134 1 15 HELIX 6 AA6 LYS A 136 LYS A 150 1 15 HELIX 7 AA7 ASP A 155 ALA A 169 1 15 HELIX 8 AA8 LYS A 171 LYS A 185 1 15 HELIX 9 AA9 ASP A 190 ALA A 204 1 15 HELIX 10 AB1 LYS A 206 LYS A 220 1 15 HELIX 11 AB2 ASN A 225 ALA A 239 1 15 HELIX 12 AB3 LYS A 241 GLU A 250 1 10 HELIX 13 AB4 ASN A 260 ALA A 274 1 15 HELIX 14 AB5 LYS A 276 PHE A 284 1 9 HELIX 15 AB6 ASP A 295 GLY A 310 1 16 HELIX 16 AB7 LYS A 311 LYS A 325 1 15 HELIX 17 AB8 ASP A 330 ALA A 344 1 15 HELIX 18 AB9 LYS A 346 LYS A 360 1 15 HELIX 19 AC1 ASP A 365 ALA A 379 1 15 HELIX 20 AC2 ASP A 383 GLY A 396 1 14 HELIX 21 AC3 ASP A 400 GLU A 409 1 10 CISPEP 1 LYS A 63 ALA A 64 0 -2.10 CISPEP 2 ALA A 64 GLY A 65 0 -14.69 CISPEP 3 GLU A 285 GLU A 286 0 12.76 CRYST1 52.546 84.904 95.899 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019031 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010428 0.00000