HEADER OXIDOREDUCTASE 20-FEB-16 5I9N TITLE CRYSTAL STRUCTURE OF B. PSEUDOMALLEI FABI IN COMPLEX WITH NAD AND TITLE 2 PT412 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: FABI, FABI_2, ACT79_25590, AM256_11615, AM257_11635, SOURCE 5 AMS56_08605, DP46_2957, DP49_6839, ERS012314_03793, ERS012372_03823, SOURCE 6 SY87_14645, TR70_1075, VU09_13745; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOYL-ACP REDUCTASE, BURKHOLDERIA PSEUDOMALLEI, DIPHENYL ETHERS, KEYWDS 2 SLOW-BINDING INHIBITORS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,S.ELTSCHKNER,P.J.TONGE,C.KISKER REVDAT 5 10-JAN-24 5I9N 1 REMARK REVDAT 4 06-SEP-17 5I9N 1 REMARK REVDAT 3 19-APR-17 5I9N 1 JRNL REVDAT 2 08-MAR-17 5I9N 1 JRNL REVDAT 1 22-FEB-17 5I9N 0 JRNL AUTH C.NECKLES,S.ELTSCHKNER,J.E.CUMMINGS,M.HIRSCHBECK,F.DARYAEE, JRNL AUTH 2 G.R.BOMMINENI,Z.ZHANG,L.SPAGNUOLO,W.YU,S.DAVOODI, JRNL AUTH 3 R.A.SLAYDEN,C.KISKER,P.J.TONGE JRNL TITL RATIONALIZING THE BINDING KINETICS FOR THE INHIBITION OF THE JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI FABI1 ENOYL-ACP REDUCTASE. JRNL REF BIOCHEMISTRY V. 56 1865 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28225601 JRNL DOI 10.1021/ACS.BIOCHEM.6B01048 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 8906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6086 - 3.6215 0.97 2929 168 0.1491 0.2009 REMARK 3 2 3.6215 - 2.8753 0.96 2789 149 0.1585 0.2187 REMARK 3 3 2.8753 - 2.5120 0.94 2731 140 0.1690 0.2472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2039 REMARK 3 ANGLE : 1.090 2768 REMARK 3 CHIRALITY : 0.069 316 REMARK 3 PLANARITY : 0.004 352 REMARK 3 DIHEDRAL : 13.632 721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0256 -10.9576 14.6233 REMARK 3 T TENSOR REMARK 3 T11: 0.6038 T22: 0.1748 REMARK 3 T33: 0.2784 T12: -0.0964 REMARK 3 T13: 0.1414 T23: -0.0773 REMARK 3 L TENSOR REMARK 3 L11: 0.8058 L22: 2.0715 REMARK 3 L33: 2.6312 L12: 0.4035 REMARK 3 L13: 0.5782 L23: -0.8250 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: 0.0613 S13: 0.0055 REMARK 3 S21: 0.0989 S22: 0.0167 S23: 0.1587 REMARK 3 S31: -0.6991 S32: 0.3327 S33: -0.1332 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5596 -9.8945 15.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.7150 T22: 0.2704 REMARK 3 T33: 0.2604 T12: -0.1784 REMARK 3 T13: 0.1357 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 0.7902 L22: 1.8259 REMARK 3 L33: 1.8287 L12: -0.0383 REMARK 3 L13: -0.2877 L23: -1.1614 REMARK 3 S TENSOR REMARK 3 S11: 0.2594 S12: -0.0834 S13: 0.2330 REMARK 3 S21: 0.1639 S22: 0.1802 S23: -0.2892 REMARK 3 S31: -0.6629 S32: 0.1254 S33: 0.1655 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7901 -9.3386 26.9313 REMARK 3 T TENSOR REMARK 3 T11: 1.2249 T22: 0.4683 REMARK 3 T33: 0.4406 T12: -0.5835 REMARK 3 T13: -0.1253 T23: -0.2159 REMARK 3 L TENSOR REMARK 3 L11: 1.3984 L22: 4.4347 REMARK 3 L33: 0.9578 L12: 0.6406 REMARK 3 L13: 0.6283 L23: 1.3625 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.3668 S13: -0.2595 REMARK 3 S21: 0.5791 S22: -0.0201 S23: -0.3444 REMARK 3 S31: -0.1511 S32: 0.0903 S33: -0.0723 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7681 -21.3609 24.1447 REMARK 3 T TENSOR REMARK 3 T11: 0.5341 T22: 0.2446 REMARK 3 T33: 0.2092 T12: -0.0172 REMARK 3 T13: 0.0769 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.7178 L22: 2.7292 REMARK 3 L33: 1.4305 L12: -0.3277 REMARK 3 L13: -0.4970 L23: 0.7290 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.1783 S13: 0.0864 REMARK 3 S21: 0.6541 S22: 0.1185 S23: -0.0116 REMARK 3 S31: -0.5524 S32: 0.2519 S33: -0.1673 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3998 -29.3520 16.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.1807 REMARK 3 T33: 0.1901 T12: -0.0109 REMARK 3 T13: 0.0356 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1944 L22: 1.9124 REMARK 3 L33: 1.9149 L12: -0.0943 REMARK 3 L13: -0.0962 L23: 0.0259 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.0418 S13: 0.0008 REMARK 3 S21: 0.2550 S22: -0.0261 S23: -0.0114 REMARK 3 S31: -0.2378 S32: -0.0521 S33: -0.1948 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3257 -23.7481 12.0718 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2420 REMARK 3 T33: 0.2123 T12: -0.0660 REMARK 3 T13: 0.0510 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 2.7647 L22: 1.6675 REMARK 3 L33: 2.2955 L12: 0.8132 REMARK 3 L13: 0.1237 L23: -0.2047 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.1240 S13: -0.0146 REMARK 3 S21: 0.3413 S22: 0.1614 S23: -0.0844 REMARK 3 S31: -0.4825 S32: 0.4771 S33: -0.1510 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4649 -23.1926 2.5233 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.3069 REMARK 3 T33: 0.2321 T12: -0.0808 REMARK 3 T13: 0.0237 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 0.8846 L22: 1.4411 REMARK 3 L33: 1.6770 L12: 0.1257 REMARK 3 L13: -0.1740 L23: -0.4741 REMARK 3 S TENSOR REMARK 3 S11: 0.1259 S12: -0.1182 S13: 0.0937 REMARK 3 S21: 0.1179 S22: 0.0708 S23: -0.2062 REMARK 3 S31: -0.4420 S32: 0.4149 S33: -0.1578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 59.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRIS, PH 6.5, 30 % PEG 300, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.31500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.37500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.31500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.37500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.31500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.37500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.31500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -74.67000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -74.67000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 479 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 LEU A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 GLU A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 234 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 223 O HOH A 401 1.90 REMARK 500 OD2 ASP A 106 O HOH A 402 2.01 REMARK 500 O HOH A 494 O HOH A 497 2.04 REMARK 500 NH2 ARG A 43 O HOH A 403 2.07 REMARK 500 O2B NAD A 301 O HOH A 404 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 496 O HOH A 501 8445 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 91 56.95 -143.60 REMARK 500 PHE A 94 143.56 -179.78 REMARK 500 ASN A 155 -15.10 68.12 REMARK 500 ASN A 157 -119.02 52.07 REMARK 500 ASP A 248 28.74 -151.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 69J A 302 DBREF1 5I9N A 1 263 UNP A0A069B9A4_BURPE DBREF2 5I9N A A0A069B9A4 1 263 SEQADV 5I9N LYS A 264 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N LEU A 265 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N ALA A 266 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N ALA A 267 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N ALA A 268 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N LEU A 269 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N GLU A 270 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N HIS A 271 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N HIS A 272 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N HIS A 273 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N HIS A 274 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N HIS A 275 UNP A0A069B9A EXPRESSION TAG SEQADV 5I9N HIS A 276 UNP A0A069B9A EXPRESSION TAG SEQRES 1 A 276 MET GLY PHE LEU ASP GLY LYS ARG ILE LEU LEU THR GLY SEQRES 2 A 276 LEU LEU SER ASN ARG SER ILE ALA TYR GLY ILE ALA LYS SEQRES 3 A 276 ALA CYS LYS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR SEQRES 4 A 276 VAL GLY ASP ARG PHE LYS ASP ARG ILE THR GLU PHE ALA SEQRES 5 A 276 ALA GLU PHE GLY SER GLU LEU VAL PHE PRO CYS ASP VAL SEQRES 6 A 276 ALA ASP ASP ALA GLN ILE ASP ALA LEU PHE ALA SER LEU SEQRES 7 A 276 LYS THR HIS TRP ASP SER LEU ASP GLY LEU VAL HIS SER SEQRES 8 A 276 ILE GLY PHE ALA PRO ARG GLU ALA ILE ALA GLY ASP PHE SEQRES 9 A 276 LEU ASP GLY LEU THR ARG GLU ASN PHE ARG ILE ALA HIS SEQRES 10 A 276 ASP ILE SER ALA TYR SER PHE PRO ALA LEU ALA LYS ALA SEQRES 11 A 276 ALA LEU PRO MET LEU SER ASP ASP ALA SER LEU LEU THR SEQRES 12 A 276 LEU SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR SEQRES 13 A 276 ASN THR MET GLY LEU ALA LYS ALA ALA LEU GLU ALA SER SEQRES 14 A 276 VAL ARG TYR LEU ALA VAL SER LEU GLY ALA LYS GLY VAL SEQRES 15 A 276 ARG VAL ASN ALA ILE SER ALA GLY PRO ILE LYS THR LEU SEQRES 16 A 276 ALA ALA SER GLY ILE LYS SER PHE GLY LYS ILE LEU ASP SEQRES 17 A 276 PHE VAL GLU SER ASN SER PRO LEU LYS ARG ASN VAL THR SEQRES 18 A 276 ILE GLU GLN VAL GLY ASN ALA GLY ALA PHE LEU LEU SER SEQRES 19 A 276 ASP LEU ALA SER GLY VAL THR ALA GLU VAL MET HIS VAL SEQRES 20 A 276 ASP SER GLY PHE ASN ALA VAL VAL GLY GLY MET ALA GLY SEQRES 21 A 276 LEU GLU GLU LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 22 A 276 HIS HIS HIS HET NAD A 301 44 HET 69J A 302 20 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 69J 5-ETHYL-4-FLUORO-2-(2-NITROPHENOXY)PHENOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 69J C14 H12 F N O4 FORMUL 4 HOH *112(H2 O) HELIX 1 AA1 SER A 19 GLU A 31 1 13 HELIX 2 AA2 GLY A 41 ARG A 43 5 3 HELIX 3 AA3 PHE A 44 GLU A 54 1 11 HELIX 4 AA4 ASP A 67 TRP A 82 1 16 HELIX 5 AA5 PRO A 96 ALA A 101 5 6 HELIX 6 AA6 THR A 109 ALA A 121 1 13 HELIX 7 AA7 TYR A 122 LEU A 132 1 11 HELIX 8 AA8 TYR A 146 GLU A 150 5 5 HELIX 9 AA9 ASN A 157 ALA A 179 1 23 HELIX 10 AB1 LEU A 195 ILE A 200 5 6 HELIX 11 AB2 SER A 202 SER A 214 1 13 HELIX 12 AB3 THR A 221 SER A 234 1 14 HELIX 13 AB4 ASP A 235 SER A 238 5 4 HELIX 14 AB5 GLY A 250 VAL A 254 5 5 SHEET 1 AA1 7 VAL A 60 PRO A 62 0 SHEET 2 AA1 7 GLU A 34 TYR A 39 1 N PHE A 37 O PHE A 61 SHEET 3 AA1 7 ARG A 8 LEU A 11 1 N LEU A 11 O ALA A 36 SHEET 4 AA1 7 LEU A 85 HIS A 90 1 O VAL A 89 N LEU A 10 SHEET 5 AA1 7 LEU A 135 SER A 145 1 O LEU A 142 N HIS A 90 SHEET 6 AA1 7 ARG A 183 ALA A 189 1 O ILE A 187 N SER A 145 SHEET 7 AA1 7 VAL A 244 VAL A 247 1 O MET A 245 N ALA A 186 SITE 1 AC1 32 GLY A 13 LEU A 15 SER A 19 ILE A 20 SITE 2 AC1 32 VAL A 40 CYS A 63 ASP A 64 VAL A 65 SITE 3 AC1 32 SER A 91 ILE A 92 GLY A 93 ILE A 119 SITE 4 AC1 32 LEU A 144 SER A 145 TYR A 146 LYS A 163 SITE 5 AC1 32 ALA A 189 GLY A 190 PRO A 191 ILE A 192 SITE 6 AC1 32 THR A 194 LEU A 195 ALA A 196 69J A 302 SITE 7 AC1 32 HOH A 404 HOH A 433 HOH A 443 HOH A 444 SITE 8 AC1 32 HOH A 459 HOH A 469 HOH A 474 HOH A 477 SITE 1 AC2 8 GLY A 93 PHE A 94 TYR A 146 TYR A 156 SITE 2 AC2 8 ALA A 196 ALA A 197 PHE A 203 NAD A 301 CRYST1 72.630 74.670 96.750 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010336 0.00000