HEADER SOLUTE-BINDING PROTEIN 21-FEB-16 5IAI TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER SOLUTE BINDING PROTEIN ARAD_9887 TITLE 2 FROM AGROBACTERIUM RADIOBACTER K84, TARGET EFI-510945 IN COMPLEX WITH TITLE 3 RIBITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM RADIOBACTER; SOURCE 3 ORGANISM_TAXID: 311403; SOURCE 4 STRAIN: K84 / ATCC BAA-868; SOURCE 5 GENE: ARAD_9887; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC TRANSPORTER SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,J.B.BONANNO,N.F.AL OBAIDI,L.L.MORISCO,J.BENACH,J.KOSS, AUTHOR 2 S.R.WASSERMAN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 1 09-MAR-16 5IAI 0 JRNL AUTH M.W.VETTING,J.B.BONANNO,N.F.AL OBAIDI,L.L.MORISCO,J.BENACH, JRNL AUTH 2 J.KOSS,S.R.WASSERMAN,J.A.GERLT,S.C.ALMO, JRNL AUTH 3 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF ABC TRANSPORTER SOLUTE BINDING PROTEIN JRNL TITL 2 ARAD_9887 FROM AGROBACTERIUM RADIOBACTER K84, TARGET JRNL TITL 3 EFI-510945 IN COMPLEX WITH RIBITOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6782 - 4.5430 0.99 2676 150 0.1472 0.1597 REMARK 3 2 4.5430 - 3.6088 1.00 2681 126 0.1323 0.1347 REMARK 3 3 3.6088 - 3.1534 1.00 2628 161 0.1534 0.2018 REMARK 3 4 3.1534 - 2.8655 1.00 2603 164 0.1697 0.2058 REMARK 3 5 2.8655 - 2.6603 1.00 2648 128 0.1685 0.2160 REMARK 3 6 2.6603 - 2.5036 1.00 2622 148 0.1563 0.1622 REMARK 3 7 2.5036 - 2.3783 1.00 2599 149 0.1483 0.1646 REMARK 3 8 2.3783 - 2.2748 1.00 2628 126 0.1487 0.1847 REMARK 3 9 2.2748 - 2.1873 0.98 2573 138 0.1809 0.2261 REMARK 3 10 2.1873 - 2.1118 1.00 2675 117 0.1550 0.1759 REMARK 3 11 2.1118 - 2.0458 1.00 2613 127 0.1582 0.1881 REMARK 3 12 2.0458 - 1.9873 1.00 2601 149 0.1545 0.1926 REMARK 3 13 1.9873 - 1.9350 1.00 2611 140 0.1654 0.1820 REMARK 3 14 1.9350 - 1.8878 0.99 2622 147 0.2315 0.2637 REMARK 3 15 1.8878 - 1.8449 1.00 2595 132 0.1793 0.2213 REMARK 3 16 1.8449 - 1.8057 1.00 2581 152 0.1812 0.2189 REMARK 3 17 1.8057 - 1.7696 1.00 2604 143 0.1815 0.2172 REMARK 3 18 1.7696 - 1.7362 1.00 2612 137 0.1956 0.2194 REMARK 3 19 1.7362 - 1.7052 1.00 2613 141 0.2072 0.2887 REMARK 3 20 1.7052 - 1.6763 1.00 2591 149 0.2255 0.2634 REMARK 3 21 1.6763 - 1.6492 1.00 2624 127 0.2412 0.2764 REMARK 3 22 1.6492 - 1.6239 1.00 2607 126 0.2517 0.3078 REMARK 3 23 1.6239 - 1.6000 1.00 2601 143 0.2676 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3141 REMARK 3 ANGLE : 0.957 4276 REMARK 3 CHIRALITY : 0.054 467 REMARK 3 PLANARITY : 0.007 560 REMARK 3 DIHEDRAL : 11.808 1866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1138 20.3383 60.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.2003 REMARK 3 T33: 0.2727 T12: 0.0643 REMARK 3 T13: -0.0356 T23: -0.0934 REMARK 3 L TENSOR REMARK 3 L11: 0.6213 L22: 0.4909 REMARK 3 L33: 0.5619 L12: 0.2641 REMARK 3 L13: 0.1975 L23: -0.3500 REMARK 3 S TENSOR REMARK 3 S11: -0.1549 S12: -0.2268 S13: 0.5289 REMARK 3 S21: 0.0493 S22: 0.0428 S23: -0.0281 REMARK 3 S31: -0.4548 S32: -0.0913 S33: 0.0147 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4913 4.6493 61.2229 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.2147 REMARK 3 T33: 0.1599 T12: 0.0303 REMARK 3 T13: 0.0128 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 0.9469 L22: 0.7655 REMARK 3 L33: 1.2290 L12: -0.1119 REMARK 3 L13: 0.2989 L23: -0.0725 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.4325 S13: -0.1621 REMARK 3 S21: 0.1016 S22: 0.0676 S23: 0.0104 REMARK 3 S31: 0.0597 S32: -0.0736 S33: -0.0598 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4222 1.1617 38.0715 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.1832 REMARK 3 T33: 0.2246 T12: -0.0482 REMARK 3 T13: -0.0228 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.0913 L22: 1.3386 REMARK 3 L33: 1.4041 L12: 0.5653 REMARK 3 L13: 0.4784 L23: 0.5762 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: 0.3053 S13: -0.1714 REMARK 3 S21: -0.2039 S22: 0.1704 S23: 0.1702 REMARK 3 S31: -0.0458 S32: -0.0487 S33: -0.0340 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9507 2.0728 42.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1401 REMARK 3 T33: 0.2208 T12: -0.0277 REMARK 3 T13: -0.0093 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.8473 L22: 0.4158 REMARK 3 L33: 0.9553 L12: -0.1750 REMARK 3 L13: 0.1759 L23: 0.4502 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.0437 S13: -0.2185 REMARK 3 S21: -0.1269 S22: 0.1061 S23: 0.1845 REMARK 3 S31: 0.0342 S32: -0.0838 S33: -0.0813 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.9358 7.1855 62.9007 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.3042 REMARK 3 T33: 0.1618 T12: 0.0602 REMARK 3 T13: 0.0296 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 1.7225 L22: 0.8826 REMARK 3 L33: 1.3360 L12: -0.3413 REMARK 3 L13: 0.3605 L23: 0.0108 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: -0.5470 S13: -0.0711 REMARK 3 S21: 0.1691 S22: 0.1425 S23: 0.1927 REMARK 3 S31: -0.0787 S32: -0.3265 S33: -0.0189 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7180 -3.7884 38.7855 REMARK 3 T TENSOR REMARK 3 T11: 0.2516 T22: 0.2686 REMARK 3 T33: 0.2512 T12: 0.0275 REMARK 3 T13: 0.0214 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 1.0575 L22: 0.7693 REMARK 3 L33: 1.2547 L12: -0.0437 REMARK 3 L13: 0.2782 L23: 0.1392 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: 0.4207 S13: -0.2737 REMARK 3 S21: -0.2436 S22: 0.0193 S23: -0.1780 REMARK 3 S31: 0.2236 S32: 0.3269 S33: -0.1057 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 82.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.92600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM RIBITOL); RESERVOIR (MCSG1 H7)(2.0 M AMMONIUM SULFATE, 0.1 REMARK 280 M BIS-TRIS PH 5.5); CRYOPROTECTION (80% 2.5 LISO4, 20% RESERVOIR) REMARK 280 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.13600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.17100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.13600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.17100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 TYR A 28 REMARK 465 PHE A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 MSE A 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 947 O HOH A 971 2.12 REMARK 500 O HOH A 637 O HOH A 999 2.12 REMARK 500 O HOH A 1070 O HOH A 1088 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 739 O HOH A 757 4547 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 37.54 -86.48 REMARK 500 ASP A 188 86.24 -151.39 REMARK 500 TYR A 311 70.76 -112.79 REMARK 500 MSE A 357 -4.04 -144.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1107 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 6.24 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB0 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510945 RELATED DB: TARGETTRACK DBREF 5IAI A 33 431 UNP B9JM84 B9JM84_AGRRK 33 431 SEQADV 5IAI MSE A 10 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI HIS A 11 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI HIS A 12 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI HIS A 13 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI HIS A 14 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI HIS A 15 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI HIS A 16 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI SER A 17 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI SER A 18 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI GLY A 19 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI VAL A 20 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI ASP A 21 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI LEU A 22 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI GLY A 23 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI THR A 24 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI GLU A 25 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI ASN A 26 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI LEU A 27 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI TYR A 28 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI PHE A 29 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI GLN A 30 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI SER A 31 UNP B9JM84 EXPRESSION TAG SEQADV 5IAI MSE A 32 UNP B9JM84 EXPRESSION TAG SEQRES 1 A 422 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 422 GLY THR GLU ASN LEU TYR PHE GLN SER MSE LYS PRO LEU SEQRES 3 A 422 ASP GLY VAL THR LEU THR LEU ALA SER GLN ASN ASP PRO SEQRES 4 A 422 PHE GLY ALA VAL LEU THR LYS LEU ALA ALA GLU PHE LYS SEQRES 5 A 422 GLN ASP THR GLY ALA ASP LEU LYS VAL GLU VAL MSE ASP SEQRES 6 A 422 TYR GLY THR LEU LEU THR LYS THR THR ALA ASP PHE VAL SEQRES 7 A 422 GLY LYS THR LYS GLY TYR ASP LEU VAL THR MSE ASP ILE SEQRES 8 A 422 VAL TRP ALA GLY ALA TYR GLN ALA ASN GLY TYR SER VAL SEQRES 9 A 422 ASP LEU THR ASP TRP VAL LYS ARG ASP ALA ALA GLU LEU SEQRES 10 A 422 ASP LEU ASP ASP ILE TYR PRO VAL ILE LEU GLN SER LEU SEQRES 11 A 422 GLY GLN TYR LYS GLY HIS TYR VAL ALA PHE PRO PHE ALA SEQRES 12 A 422 ALA TYR ALA ASN VAL LEU ALA TYR ARG LYS ASP LEU PHE SEQRES 13 A 422 GLN ALA ALA GLY LEU PRO VAL PRO THR THR VAL GLU GLU SEQRES 14 A 422 LEU VAL SER ASP ALA LYS LYS LEU THR ASP PRO SER LYS SEQRES 15 A 422 LYS GLN TYR GLY PHE VAL ALA ASN GLY GLN LYS GLY PRO SEQRES 16 A 422 ALA VAL ALA GLN ASP TRP MSE GLN TYR ASN ASN GLN MSE SEQRES 17 A 422 GLY GLY SER ILE LEU ASP ASN ASP GLY LYS PRO ALA LEU SEQRES 18 A 422 ASN SER PRO GLU ASN VAL LYS SER LEU THR VAL TYR LYS SEQRES 19 A 422 GLN LEU PHE VAL GLU THR ALA PRO PRO GLY ALA ILE GLU SEQRES 20 A 422 TYR ASP TRP GLY GLY ARG GLU GLU SER PHE ARG GLN GLY SEQRES 21 A 422 ALA ALA ALA MSE MSE GLN THR TRP SER VAL GLY ALA PRO SEQRES 22 A 422 GLY TYR SER ASP PRO ALA SER SER ASN VAL VAL GLY LYS SEQRES 23 A 422 VAL GLY ILE THR THR ALA PRO VAL GLY LYS GLY VAL PRO SEQRES 24 A 422 PRO GLN TYR GLY VAL GLY GLY TRP GLY MSE ALA ILE ASN SEQRES 25 A 422 ALA ASP ILE ASP PRO LYS GLN LYS GLU ALA ALA TRP THR SEQRES 26 A 422 PHE ILE LYS TRP LEU VAL SER LYS LYS ILE HIS LYS GLU SEQRES 27 A 422 PHE ASN MSE ASP GLY ALA GLY SER PHE MSE ARG LYS SER SEQRES 28 A 422 GLN MSE THR ASP PRO ASP LEU THR ALA LYS PHE ASP PHE SEQRES 29 A 422 LEU PRO VAL VAL ALA LYS THR TYR GLU ASN GLY ASN GLY SEQRES 30 A 422 GLU TYR ARG PRO ARG ILE PRO GLU TYR PRO GLU ILE GLN SEQRES 31 A 422 ASP ILE LEU GLY SER ALA VAL ASN SER VAL LEU ALA GLY SEQRES 32 A 422 ALA ALA GLU PRO GLN ALA ALA LEU ASP GLU ALA GLN VAL SEQRES 33 A 422 GLU ALA LYS LYS LEU PHE MODRES 5IAI MSE A 73 MET MODIFIED RESIDUE MODRES 5IAI MSE A 98 MET MODIFIED RESIDUE MODRES 5IAI MSE A 211 MET MODIFIED RESIDUE MODRES 5IAI MSE A 217 MET MODIFIED RESIDUE MODRES 5IAI MSE A 273 MET MODIFIED RESIDUE MODRES 5IAI MSE A 274 MET MODIFIED RESIDUE MODRES 5IAI MSE A 318 MET MODIFIED RESIDUE MODRES 5IAI MSE A 350 MET MODIFIED RESIDUE MODRES 5IAI MSE A 357 MET MODIFIED RESIDUE MODRES 5IAI MSE A 362 MET MODIFIED RESIDUE HET MSE A 73 17 HET MSE A 98 17 HET MSE A 211 17 HET MSE A 217 17 HET MSE A 273 17 HET MSE A 274 17 HET MSE A 318 17 HET MSE A 350 17 HET MSE A 357 17 HET MSE A 362 17 HET RB0 A 501 10 HET GOL A 502 6 HETNAM MSE SELENOMETHIONINE HETNAM RB0 D-RIBITOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 RB0 C5 H12 O5 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *508(H2 O) HELIX 1 AA1 PRO A 48 GLY A 65 1 18 HELIX 2 AA2 ASP A 74 LYS A 89 1 16 HELIX 3 AA3 TRP A 102 GLY A 110 1 9 HELIX 4 AA4 LEU A 115 ASP A 122 1 8 HELIX 5 AA5 ASP A 122 ASP A 127 1 6 HELIX 6 AA6 LEU A 128 ILE A 131 5 4 HELIX 7 AA7 TYR A 132 GLY A 140 1 9 HELIX 8 AA8 LYS A 162 GLY A 169 1 8 HELIX 9 AA9 THR A 175 LEU A 186 1 12 HELIX 10 AB1 ASP A 188 LYS A 192 5 5 HELIX 11 AB2 GLY A 203 MSE A 217 1 15 HELIX 12 AB3 SER A 232 ALA A 250 1 19 HELIX 13 AB4 PRO A 251 TYR A 257 5 7 HELIX 14 AB5 ASP A 258 GLY A 269 1 12 HELIX 15 AB6 GLY A 280 SER A 285 1 6 HELIX 16 AB7 ASP A 325 SER A 341 1 17 HELIX 17 AB8 SER A 341 ASP A 351 1 11 HELIX 18 AB9 ARG A 358 THR A 363 1 6 HELIX 19 AC1 ASP A 364 PHE A 371 1 8 HELIX 20 AC2 PHE A 373 ASN A 383 1 11 HELIX 21 AC3 GLU A 394 ALA A 411 1 18 HELIX 22 AC4 GLU A 415 LYS A 429 1 15 SHEET 1 AA1 6 ASP A 67 MSE A 73 0 SHEET 2 AA1 6 THR A 39 GLN A 45 1 N LEU A 40 O LYS A 69 SHEET 3 AA1 6 LEU A 95 ASP A 99 1 O THR A 97 N ALA A 43 SHEET 4 AA1 6 VAL A 313 ILE A 320 -1 O GLY A 317 N MSE A 98 SHEET 5 AA1 6 PHE A 149 ARG A 161 -1 N PHE A 149 O MSE A 318 SHEET 6 AA1 6 MSE A 273 TRP A 277 -1 O THR A 276 N VAL A 157 SHEET 1 AA2 6 ASP A 67 MSE A 73 0 SHEET 2 AA2 6 THR A 39 GLN A 45 1 N LEU A 40 O LYS A 69 SHEET 3 AA2 6 LEU A 95 ASP A 99 1 O THR A 97 N ALA A 43 SHEET 4 AA2 6 VAL A 313 ILE A 320 -1 O GLY A 317 N MSE A 98 SHEET 5 AA2 6 PHE A 149 ARG A 161 -1 N PHE A 149 O MSE A 318 SHEET 6 AA2 6 VAL A 296 THR A 300 -1 O GLY A 297 N TYR A 160 SHEET 1 AA3 2 GLN A 141 TYR A 142 0 SHEET 2 AA3 2 HIS A 145 TYR A 146 -1 O HIS A 145 N TYR A 142 LINK C VAL A 72 N MSE A 73 1555 1555 1.32 LINK C MSE A 73 N ASP A 74 1555 1555 1.34 LINK C THR A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N ASP A 99 1555 1555 1.33 LINK C TRP A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N GLN A 212 1555 1555 1.34 LINK C GLN A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N GLY A 218 1555 1555 1.33 LINK C ALA A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N GLN A 275 1555 1555 1.35 LINK C GLY A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N ALA A 319 1555 1555 1.34 LINK C ASN A 349 N MSE A 350 1555 1555 1.33 LINK C MSE A 350 N ASP A 351 1555 1555 1.33 LINK C PHE A 356 N MSE A 357 1555 1555 1.33 LINK C MSE A 357 N ARG A 358 1555 1555 1.34 LINK C GLN A 361 N MSE A 362 1555 1555 1.33 LINK C MSE A 362 N THR A 363 1555 1555 1.33 SITE 1 AC1 10 ASP A 47 ASP A 99 ILE A 100 GLN A 208 SITE 2 AC1 10 TRP A 259 TRP A 277 GLY A 315 TRP A 316 SITE 3 AC1 10 ARG A 389 HOH A 672 SITE 1 AC2 5 ASP A 114 LYS A 329 HOH A 610 HOH A 619 SITE 2 AC2 5 HOH A 806 CRYST1 166.272 56.342 52.095 90.00 93.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006014 0.000000 0.000409 0.00000 SCALE2 0.000000 0.017749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019240 0.00000