HEADER HYDROLASE 22-FEB-16 5IAZ TITLE THE C-TERMINAL DOMAIN OF RICE BETA-GALACTOSIDASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 734-851; COMPND 5 SYNONYM: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. INDICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39946; SOURCE 5 GENE: OSI_10152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3) KEYWDS GLYCOSIDE HYDROLASE, EXOGLYCOSIDASE, BETA-SANDWICH, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR T.RIMLUMDUAN,Y.-L.HUA,T.TANAKA,J.R.KETUDAT-CAIRNS REVDAT 3 14-JUN-23 5IAZ 1 COMPND JRNL REVDAT 2 17-AUG-16 5IAZ 1 JRNL REVDAT 1 10-AUG-16 5IAZ 0 JRNL AUTH T.RIMLUMDUAN,Y.-L.HUA,T.TANAKA,J.R.KETUDAT CAIRNS JRNL TITL STRUCTURE OF A PLANT BETA-GALACTOSIDASE C-TERMINAL DOMAIN JRNL REF BIOCHIM.BIOPHYS.ACTA V.1864 1411 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27451952 JRNL DOI 10.1016/J.BBAPAP.2016.07.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR V3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218011. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM OSBGAL1 CTER, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 95 % H2O, 5 % [U-2H] REMARK 210 D2O, 95% H2O/5% D2O; 0.54 MM REMARK 210 OSBGAL1 CTER, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 100 % [U-2H] D2O, 100% REMARK 210 D2O; 0.79 MM [U-100% 15N] REMARK 210 OSBGAL1 CTER, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 95 % H2O, 5 % [U-2H] REMARK 210 D2O, 95% H2O/5% D2O; 0.5 MM [U- REMARK 210 100% 13C; U-100% 15N] OSBGAL1 REMARK 210 CTER, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 95 % H2O, REMARK 210 5 % [U-2H] D2O, 95% H2O/5% D2O; REMARK 210 0.18 MM [U-10% 13C] OSBGAL1 CTER, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 95 % H2O, 5 % REMARK 210 [U-2H] D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D HNHA; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 C(CO)NH; 3D HBCBCACOCAHA; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA; AVANCE DRX; AVANCE REMARK 210 III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, PIPP, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 GLY A 722 REMARK 465 SER A 723 REMARK 465 HIS A 724 REMARK 465 MET A 725 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 728 55.48 -158.37 REMARK 500 1 SER A 729 -177.96 -179.93 REMARK 500 1 HIS A 739 48.44 -173.67 REMARK 500 1 ASN A 741 99.77 -65.02 REMARK 500 1 ASN A 744 101.46 172.81 REMARK 500 1 TRP A 745 43.98 -160.72 REMARK 500 1 GLN A 746 113.32 176.96 REMARK 500 1 GLU A 752 73.30 -169.14 REMARK 500 1 PRO A 753 45.06 -79.07 REMARK 500 1 PHE A 755 76.00 -151.98 REMARK 500 1 ALA A 776 113.55 -169.21 REMARK 500 1 PHE A 778 72.98 -116.19 REMARK 500 1 CYS A 785 108.33 -52.99 REMARK 500 1 THR A 787 47.27 -157.81 REMARK 500 1 PHE A 788 170.89 -46.02 REMARK 500 1 GLU A 792 -37.97 -142.64 REMARK 500 1 ILE A 796 26.67 42.41 REMARK 500 1 ASN A 797 22.66 -152.49 REMARK 500 1 CYS A 806 -71.51 -163.23 REMARK 500 1 PRO A 825 -91.20 -80.53 REMARK 500 1 MET A 830 158.32 -42.71 REMARK 500 1 SER A 840 -82.02 -136.43 REMARK 500 2 SER A 729 178.58 -55.01 REMARK 500 2 HIS A 739 97.77 -175.27 REMARK 500 2 ASN A 741 -52.93 82.23 REMARK 500 2 ILE A 742 133.81 59.93 REMARK 500 2 GLN A 746 152.69 66.73 REMARK 500 2 ILE A 747 36.65 -157.13 REMARK 500 2 GLU A 748 -99.25 -101.17 REMARK 500 2 TYR A 750 -79.31 -92.20 REMARK 500 2 GLU A 752 172.17 58.47 REMARK 500 2 ALA A 776 121.49 -176.52 REMARK 500 2 PHE A 778 74.19 -116.82 REMARK 500 2 THR A 784 -146.74 -115.33 REMARK 500 2 THR A 787 36.98 -140.86 REMARK 500 2 GLN A 790 108.15 -46.32 REMARK 500 2 SER A 795 -130.59 -72.89 REMARK 500 2 ASN A 797 22.12 -154.75 REMARK 500 2 CYS A 806 -33.00 -156.96 REMARK 500 2 SER A 817 171.93 174.74 REMARK 500 2 SER A 819 46.53 -95.81 REMARK 500 2 PHE A 821 -72.22 -103.73 REMARK 500 2 GLU A 828 25.20 47.36 REMARK 500 2 MET A 830 -173.13 -56.89 REMARK 500 3 THR A 727 152.18 62.64 REMARK 500 3 VAL A 728 -67.88 -97.64 REMARK 500 3 ALA A 733 114.27 -167.59 REMARK 500 3 TYR A 738 -57.23 -122.52 REMARK 500 3 HIS A 739 104.28 52.94 REMARK 500 3 ASN A 741 -38.53 -134.00 REMARK 500 REMARK 500 THIS ENTRY HAS 546 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 726 0.27 SIDE CHAIN REMARK 500 1 ARG A 804 0.24 SIDE CHAIN REMARK 500 1 ARG A 811 0.22 SIDE CHAIN REMARK 500 1 ARG A 832 0.26 SIDE CHAIN REMARK 500 2 ARG A 726 0.30 SIDE CHAIN REMARK 500 2 ARG A 804 0.28 SIDE CHAIN REMARK 500 2 ARG A 811 0.29 SIDE CHAIN REMARK 500 2 ARG A 832 0.18 SIDE CHAIN REMARK 500 3 ARG A 726 0.31 SIDE CHAIN REMARK 500 3 ARG A 804 0.31 SIDE CHAIN REMARK 500 3 ARG A 811 0.22 SIDE CHAIN REMARK 500 3 ARG A 832 0.32 SIDE CHAIN REMARK 500 4 ARG A 726 0.27 SIDE CHAIN REMARK 500 4 ARG A 804 0.24 SIDE CHAIN REMARK 500 4 ARG A 811 0.31 SIDE CHAIN REMARK 500 4 ARG A 832 0.32 SIDE CHAIN REMARK 500 5 ARG A 726 0.28 SIDE CHAIN REMARK 500 5 ARG A 804 0.32 SIDE CHAIN REMARK 500 5 ARG A 811 0.31 SIDE CHAIN REMARK 500 5 ARG A 832 0.30 SIDE CHAIN REMARK 500 6 ARG A 726 0.19 SIDE CHAIN REMARK 500 6 ARG A 804 0.31 SIDE CHAIN REMARK 500 6 ARG A 811 0.20 SIDE CHAIN REMARK 500 6 ARG A 832 0.23 SIDE CHAIN REMARK 500 7 ARG A 726 0.17 SIDE CHAIN REMARK 500 7 ARG A 804 0.24 SIDE CHAIN REMARK 500 7 ARG A 832 0.25 SIDE CHAIN REMARK 500 8 ARG A 726 0.28 SIDE CHAIN REMARK 500 8 ARG A 804 0.28 SIDE CHAIN REMARK 500 8 ARG A 811 0.25 SIDE CHAIN REMARK 500 8 ARG A 832 0.17 SIDE CHAIN REMARK 500 9 ARG A 726 0.22 SIDE CHAIN REMARK 500 9 ARG A 804 0.29 SIDE CHAIN REMARK 500 9 ARG A 832 0.29 SIDE CHAIN REMARK 500 10 ARG A 726 0.25 SIDE CHAIN REMARK 500 10 ARG A 804 0.13 SIDE CHAIN REMARK 500 10 ARG A 811 0.29 SIDE CHAIN REMARK 500 10 ARG A 832 0.28 SIDE CHAIN REMARK 500 11 ARG A 726 0.31 SIDE CHAIN REMARK 500 11 ARG A 804 0.25 SIDE CHAIN REMARK 500 11 ARG A 811 0.25 SIDE CHAIN REMARK 500 11 ARG A 832 0.30 SIDE CHAIN REMARK 500 12 ARG A 726 0.17 SIDE CHAIN REMARK 500 12 ARG A 804 0.22 SIDE CHAIN REMARK 500 12 ARG A 811 0.21 SIDE CHAIN REMARK 500 12 ARG A 832 0.13 SIDE CHAIN REMARK 500 13 ARG A 726 0.31 SIDE CHAIN REMARK 500 13 ARG A 804 0.18 SIDE CHAIN REMARK 500 13 ARG A 811 0.20 SIDE CHAIN REMARK 500 13 ARG A 832 0.28 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 97 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30020 RELATED DB: BMRB DBREF 5IAZ A 726 843 UNP B8ANX7 B8ANX7_ORYSI 734 851 SEQADV 5IAZ GLY A 722 UNP B8ANX7 EXPRESSION TAG SEQADV 5IAZ SER A 723 UNP B8ANX7 EXPRESSION TAG SEQADV 5IAZ HIS A 724 UNP B8ANX7 EXPRESSION TAG SEQADV 5IAZ MET A 725 UNP B8ANX7 EXPRESSION TAG SEQRES 1 A 122 GLY SER HIS MET ARG THR VAL SER GLY VAL CYS ALA ASP SEQRES 2 A 122 VAL SER GLU TYR HIS PRO ASN ILE LYS ASN TRP GLN ILE SEQRES 3 A 122 GLU SER TYR GLY GLU PRO GLU PHE HIS THR ALA LYS VAL SEQRES 4 A 122 HIS LEU LYS CYS ALA PRO GLY GLN THR ILE SER ALA ILE SEQRES 5 A 122 LYS PHE ALA SER PHE GLY THR PRO LEU GLY THR CYS GLY SEQRES 6 A 122 THR PHE GLN GLN GLY GLU CYS HIS SER ILE ASN SER ASN SEQRES 7 A 122 SER VAL LEU GLU ARG LYS CYS ILE GLY LEU GLU ARG CYS SEQRES 8 A 122 VAL VAL ALA ILE SER PRO SER ASN PHE GLY GLY ASP PRO SEQRES 9 A 122 CYS PRO GLU VAL MET LYS ARG VAL ALA VAL GLU ALA VAL SEQRES 10 A 122 CYS SER THR ALA ALA SHEET 1 AA1 3 VAL A 731 SER A 736 0 SHEET 2 AA1 3 ARG A 832 CYS A 839 -1 O VAL A 833 N VAL A 735 SHEET 3 AA1 3 ILE A 770 GLY A 779 -1 N GLY A 779 O ARG A 832 SHEET 1 AA2 2 LYS A 759 LYS A 763 0 SHEET 2 AA2 2 ARG A 811 ALA A 815 -1 O CYS A 812 N LEU A 762 SSBOND 1 CYS A 732 CYS A 785 1555 1555 2.02 SSBOND 2 CYS A 764 CYS A 839 1555 1555 2.02 SSBOND 3 CYS A 793 CYS A 826 1555 1555 2.02 SSBOND 4 CYS A 806 CYS A 812 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.001000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.001000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001000 0.00000 MODEL 1