HEADER MOTOR PROTEIN 22-FEB-16 5IBW TITLE COMPLEX OF MLCC BOUND TO THE TANDEM IQ MOTIF OF MYOC COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING EF-HAND DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MYOSIN IC HEAVY CHAIN; COMPND 7 CHAIN: C; COMPND 8 FRAGMENT: UNP RESIDUES 699-739; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: DDB_G0289563; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 11 ORGANISM_COMMON: SLIME MOLD; SOURCE 12 ORGANISM_TAXID: 44689; SOURCE 13 GENE: MYOC, DMIC, DDB_G0276617; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: BL21(DE3) KEYWDS MYOSIN IQ MOTIF COMPLEX, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.N.LANGELAAN,S.P.SMITH REVDAT 6 27-SEP-23 5IBW 1 REMARK REVDAT 5 08-JAN-20 5IBW 1 REMARK REVDAT 4 13-SEP-17 5IBW 1 JRNL REMARK REVDAT 3 21-SEP-16 5IBW 1 JRNL REVDAT 2 10-AUG-16 5IBW 1 JRNL REVDAT 1 03-AUG-16 5IBW 0 JRNL AUTH D.N.LANGELAAN,J.LIBURD,Y.YANG,E.MILLER,S.CHITAYAT, JRNL AUTH 2 S.W.CRAWLEY,G.P.COTE,S.P.SMITH JRNL TITL STRUCTURE OF THE SINGLE-LOBE MYOSIN LIGHT CHAIN C IN COMPLEX JRNL TITL 2 WITH THE LIGHT CHAIN-BINDING DOMAINS OF MYOSIN-1C PROVIDES JRNL TITL 3 INSIGHTS INTO DIVERGENT IQ MOTIF RECOGNITION. JRNL REF J.BIOL.CHEM. V. 291 19607 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27466369 JRNL DOI 10.1074/JBC.M116.746313 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 11982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0500 - 1.9000 0.00 0 0 0.1200 0.1900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7712 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12613 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IX7 REMARK 200 REMARK 200 REMARK: SMALL TRIANGULAR PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7M NAH2PO4/K2HPO4 PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 284 O HOH C 119 1.61 REMARK 500 O HOH B 114 O HOH B 155 1.78 REMARK 500 O HOH A 247 O HOH A 281 1.85 REMARK 500 O HOH A 294 O HOH A 296 1.86 REMARK 500 O HOH A 294 O HOH A 298 1.91 REMARK 500 O HOH A 296 O HOH A 298 1.95 REMARK 500 O HOH A 285 O HOH A 288 1.99 REMARK 500 O HOH B 154 O HOH B 165 2.00 REMARK 500 O HOH A 251 O HOH A 301 2.04 REMARK 500 OE1 GLU C 25 O HOH C 101 2.05 REMARK 500 O HOH C 104 O HOH C 124 2.07 REMARK 500 OH TYR B 63 O HOH B 101 2.10 REMARK 500 O HOH A 203 O HOH A 284 2.15 REMARK 500 O HOH B 155 O HOH B 170 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 156 O HOH C 125 1546 1.42 REMARK 500 O HOH B 133 O HOH C 137 1455 1.98 REMARK 500 O HOH A 254 O HOH C 133 1464 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 18 O REMARK 620 2 ASP A 21 O 78.3 REMARK 620 3 HOH A 249 O 162.3 84.9 REMARK 620 4 HOH A 264 O 91.4 90.2 83.2 REMARK 620 5 HOH A 278 O 87.4 97.9 100.4 171.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 101 DBREF 5IBW A 4 77 UNP Q54HC2 Q54HC2_DICDI 1 74 DBREF 5IBW B 4 77 UNP Q54HC2 Q54HC2_DICDI 1 74 DBREF 5IBW C 3 43 UNP P42522 MYOC_DICDI 699 739 SEQADV 5IBW GLY A 1 UNP Q54HC2 EXPRESSION TAG SEQADV 5IBW SER A 2 UNP Q54HC2 EXPRESSION TAG SEQADV 5IBW HIS A 3 UNP Q54HC2 EXPRESSION TAG SEQADV 5IBW GLY B 1 UNP Q54HC2 EXPRESSION TAG SEQADV 5IBW SER B 2 UNP Q54HC2 EXPRESSION TAG SEQADV 5IBW HIS B 3 UNP Q54HC2 EXPRESSION TAG SEQADV 5IBW GLY C 1 UNP P42522 EXPRESSION TAG SEQADV 5IBW SER C 2 UNP P42522 EXPRESSION TAG SEQRES 1 A 77 GLY SER HIS MET ASN HIS ILE ASN THR LYS ALA GLN VAL SEQRES 2 A 77 ILE GLU ALA PHE LYS VAL PHE ASP ARG ASP GLY ASN GLY SEQRES 3 A 77 TYR VAL THR VAL ASP TYR LEU ARG LYS VAL LEU ASN GLU SEQRES 4 A 77 LEU GLY ASP MET MET PRO ALA ASP GLU ILE GLU GLU MET SEQRES 5 A 77 ILE TYR GLU ALA ASP PRO GLN ASN SER GLY TYR VAL GLN SEQRES 6 A 77 TYR GLU THR PHE VAL GLY MET LEU PHE LEU TRP ASP SEQRES 1 B 77 GLY SER HIS MET ASN HIS ILE ASN THR LYS ALA GLN VAL SEQRES 2 B 77 ILE GLU ALA PHE LYS VAL PHE ASP ARG ASP GLY ASN GLY SEQRES 3 B 77 TYR VAL THR VAL ASP TYR LEU ARG LYS VAL LEU ASN GLU SEQRES 4 B 77 LEU GLY ASP MET MET PRO ALA ASP GLU ILE GLU GLU MET SEQRES 5 B 77 ILE TYR GLU ALA ASP PRO GLN ASN SER GLY TYR VAL GLN SEQRES 6 B 77 TYR GLU THR PHE VAL GLY MET LEU PHE LEU TRP ASP SEQRES 1 C 43 GLY SER ARG TYR TRP HIS ASP MET ALA SER ARG ILE LYS SEQRES 2 C 43 ASN ALA TYR ARG ASN TYR LYS ALA PHE GLN PHE GLU CYS SEQRES 3 C 43 SER ASN ARG ILE LYS ASN ALA PHE ARG ASN TYR LYS LEU SEQRES 4 C 43 TYR ARG GLN ARG HET NA A 101 1 HETNAM NA SODIUM ION FORMUL 4 NA NA 1+ FORMUL 5 HOH *238(H2 O) HELIX 1 AA1 THR A 9 ASP A 21 1 13 HELIX 2 AA2 VAL A 30 LEU A 40 1 11 HELIX 3 AA3 PRO A 45 ASP A 57 1 13 HELIX 4 AA4 GLN A 65 PHE A 74 1 10 HELIX 5 AA5 THR B 9 PHE B 20 1 12 HELIX 6 AA6 VAL B 30 LEU B 40 1 11 HELIX 7 AA7 PRO B 45 ASP B 57 1 13 HELIX 8 AA8 GLN B 65 PHE B 74 1 10 HELIX 9 AA9 SER C 2 ARG C 41 1 40 SHEET 1 AA1 2 VAL A 28 THR A 29 0 SHEET 2 AA1 2 TYR A 63 VAL A 64 -1 O VAL A 64 N VAL A 28 SHEET 1 AA2 2 VAL B 28 THR B 29 0 SHEET 2 AA2 2 TYR B 63 VAL B 64 -1 O VAL B 64 N VAL B 28 LINK O LYS A 18 NA NA A 101 1555 1555 2.39 LINK O ASP A 21 NA NA A 101 1555 1555 2.48 LINK NA NA A 101 O HOH A 249 1555 1555 2.18 LINK NA NA A 101 O HOH A 264 1555 1555 2.87 LINK NA NA A 101 O HOH A 278 1555 1555 2.26 SITE 1 AC1 5 LYS A 18 ASP A 21 HOH A 249 HOH A 264 SITE 2 AC1 5 HOH A 278 CRYST1 28.680 31.410 56.410 75.79 84.00 67.06 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034868 -0.014757 -0.000375 0.00000 SCALE2 0.000000 0.034571 -0.007929 0.00000 SCALE3 0.000000 0.000000 0.018288 0.00000