HEADER TRANSFERASE 23-FEB-16 5ICF TITLE CRYSTAL STRUCTURE OF (S)-NORCOCLAURINE 6-O-METHYLTRANSFERASE WITH S- TITLE 2 ADENOSYL-L-HOMOCYSTEINE AND SANGUINARINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-NORCOCLAURINE 6-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.128; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THALICTRUM FLAVUM SUBSP. GLAUCUM; SOURCE 3 ORGANISM_COMMON: YELLOW MEADOW RUE; SOURCE 4 ORGANISM_TAXID: 150095; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, BENZYLISOQUINOLINE ALKALOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.Y.ROBIN,M.GRAINDORGE,C.GIUSTINI,R.DUMAS,M.MATRINGE REVDAT 4 10-DEC-25 5ICF 1 REMARK REVDAT 3 08-MAY-24 5ICF 1 REMARK REVDAT 2 12-OCT-16 5ICF 1 JRNL REVDAT 1 08-JUN-16 5ICF 0 JRNL AUTH A.Y.ROBIN,C.GIUSTINI,M.GRAINDORGE,M.MATRINGE,R.DUMAS JRNL TITL CRYSTAL STRUCTURE OF NORCOCLAURINE-6-O-METHYLTRANSFERASE, A JRNL TITL 2 KEY RATE-LIMITING STEP IN THE SYNTHESIS OF JRNL TITL 3 BENZYLISOQUINOLINE ALKALOIDS. JRNL REF PLANT J. V. 87 641 2016 JRNL REFN ESSN 1365-313X JRNL PMID 27232113 JRNL DOI 10.1111/TPJ.13225 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2109 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3060 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4166 ; 1.855 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;37.636 ;25.210 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;13.967 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.603 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2249 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1469 ; 1.656 ; 1.574 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1849 ; 2.427 ; 2.356 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1589 ; 2.829 ; 1.823 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ICF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM CITRATE, PHOSPHATE REMARK 280 CITRATE BUFFER, PH 5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.67000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.67000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 403 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CE NZ REMARK 470 LYS A 77 NZ REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 179 CD CE NZ REMARK 470 LYS A 261 CD CE NZ REMARK 470 ARG A 269 CZ NH1 NH2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 331 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 537 O HOH A 673 2.10 REMARK 500 O2 EDO A 414 O HOH A 501 2.12 REMARK 500 O HOH A 720 O HOH A 725 2.15 REMARK 500 OE1 GLU A 164 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 133 38.06 39.17 REMARK 500 ILE A 254 -63.15 -109.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 605 O REMARK 620 2 HOH A 605 O 81.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 420 DBREF 5ICF A 3 350 UNP Q5C9L7 Q5C9L7_THLFG 3 350 SEQADV 5ICF GLY A -1 UNP Q5C9L7 EXPRESSION TAG SEQADV 5ICF ALA A 0 UNP Q5C9L7 EXPRESSION TAG SEQADV 5ICF MET A 1 UNP Q5C9L7 EXPRESSION TAG SEQADV 5ICF VAL A 2 UNP Q5C9L7 EXPRESSION TAG SEQRES 1 A 352 GLY ALA MET VAL MET ILE ASN LYS GLU ASN LEU SER SER SEQRES 2 A 352 GLN ALA LYS LEU TRP ASN PHE ILE TYR GLY PHE ALA ASP SEQRES 3 A 352 SER LEU VAL LEU LYS SER ALA VAL GLN LEU ASP LEU ALA SEQRES 4 A 352 ASN ILE ILE HIS ASN HIS GLY SER PRO MET THR LEU SER SEQRES 5 A 352 GLU LEU SER LEU HIS LEU PRO SER GLN PRO VAL ASN GLN SEQRES 6 A 352 ASP ALA LEU TYR ARG VAL LEU ARG TYR LEU VAL HIS MET SEQRES 7 A 352 LYS LEU PHE THR LYS SER SER ILE ASP GLY GLU LEU ARG SEQRES 8 A 352 TYR GLY LEU ALA PRO PRO ALA LYS PHE LEU VAL LYS GLY SEQRES 9 A 352 TRP ASP LYS CYS MET LEU GLY ALA ILE LEU THR ILE THR SEQRES 10 A 352 ASP LYS ASP PHE MET ALA PRO TRP HIS TYR LEU LYS GLU SEQRES 11 A 352 GLY ILE LEU ASN ASP GLY SER THR SER THR ALA PHE GLU SEQRES 12 A 352 LYS ALA LEU GLY THR ASN ILE TRP ASP TYR MET ALA GLU SEQRES 13 A 352 HIS PRO GLU LYS ASN GLN LEU PHE ASN GLU GLY MET ALA SEQRES 14 A 352 ASN ASP THR ARG LEU ILE MET SER ALA LEU VAL LYS GLU SEQRES 15 A 352 CYS SER SER MET PHE ASP GLY ILE THR THR ILE VAL ASP SEQRES 16 A 352 VAL GLY GLY GLY THR GLY THR ALA VAL ARG ASN ILE ALA SEQRES 17 A 352 LYS ALA PHE PRO HIS ILE LYS CYS THR VAL TYR ASP LEU SEQRES 18 A 352 PRO HIS VAL ILE ALA ASP SER PRO GLY TYR THR GLU ILE SEQRES 19 A 352 ASN SER ILE GLN GLY ASP MET PHE LYS TYR ILE PRO ASN SEQRES 20 A 352 ALA ASP ALA ILE MET MET LYS CYS ILE LEU HIS ASP TRP SEQRES 21 A 352 ASP ASP LYS GLU CYS ILE GLU ILE LEU LYS ARG CYS LYS SEQRES 22 A 352 ASP ALA VAL PRO ARG ASP GLY GLY LYS VAL ILE ILE ILE SEQRES 23 A 352 ASP ILE ILE LEU ASP VAL LYS SER GLU HIS PRO TYR THR SEQRES 24 A 352 LYS MET ARG LEU THR LEU ASP LEU ASP MET MET LEU ASN SEQRES 25 A 352 THR GLY GLY LYS GLU ARG THR GLU GLU GLU TRP LYS LYS SEQRES 26 A 352 LEU ILE HIS ASP ALA GLY TYR LYS GLY TYR LYS ILE THR SEQRES 27 A 352 HIS ILE SER ALA VAL GLN SER VAL ILE GLU ALA TYR PRO SEQRES 28 A 352 TYR HET SAH A 401 26 HET SAU A 402 25 HET K A 403 1 HET K A 404 1 HET NA A 405 1 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 8 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HET EDO A 418 4 HET DMS A 419 4 HET DMS A 420 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM SAU 13-METHYL[1,3]BENZODIOXOLO[5,6-C][1,3]DIOXOLO[4,5- HETNAM 2 SAU I]PHENANTHRIDIN-13-IUM HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN SAU SANGUINARINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 SAU C20 H14 N O4 1+ FORMUL 4 K 2(K 1+) FORMUL 6 NA NA 1+ FORMUL 7 EDO 13(C2 H6 O2) FORMUL 20 DMS 2(C2 H6 O S) FORMUL 22 HOH *225(H2 O) HELIX 1 AA1 ASN A 8 TYR A 20 1 13 HELIX 2 AA2 TYR A 20 ASP A 35 1 16 HELIX 3 AA3 ASP A 35 GLY A 44 1 10 HELIX 4 AA4 THR A 48 HIS A 55 1 8 HELIX 5 AA5 ASN A 62 MET A 76 1 15 HELIX 6 AA6 PRO A 94 VAL A 100 5 7 HELIX 7 AA7 MET A 107 THR A 115 1 9 HELIX 8 AA8 ASP A 116 ALA A 121 1 6 HELIX 9 AA9 PRO A 122 HIS A 124 5 3 HELIX 10 AB1 TYR A 125 LEU A 131 1 7 HELIX 11 AB2 THR A 138 GLY A 145 1 8 HELIX 12 AB3 ASN A 147 HIS A 155 1 9 HELIX 13 AB4 HIS A 155 CYS A 181 1 27 HELIX 14 AB5 SER A 182 ASP A 186 5 5 HELIX 15 AB6 GLY A 199 PHE A 209 1 11 HELIX 16 AB7 LEU A 219 ALA A 224 1 6 HELIX 17 AB8 ILE A 254 TRP A 258 5 5 HELIX 18 AB9 ASP A 259 VAL A 274 1 16 HELIX 19 AC1 TYR A 296 THR A 311 1 16 HELIX 20 AC2 GLU A 318 ALA A 328 1 11 SHEET 1 AA1 2 PHE A 79 ILE A 84 0 SHEET 2 AA1 2 GLU A 87 LEU A 92 -1 O GLU A 87 N ILE A 84 SHEET 1 AA2 7 ASN A 233 GLN A 236 0 SHEET 2 AA2 7 LYS A 213 ASP A 218 1 N VAL A 216 O ILE A 235 SHEET 3 AA2 7 THR A 190 VAL A 194 1 N ASP A 193 O THR A 215 SHEET 4 AA2 7 ALA A 248 LYS A 252 1 O MET A 250 N VAL A 192 SHEET 5 AA2 7 LYS A 280 ASP A 285 1 O ILE A 282 N ILE A 249 SHEET 6 AA2 7 SER A 343 TYR A 348 -1 O ILE A 345 N ILE A 283 SHEET 7 AA2 7 GLY A 332 THR A 336 -1 N THR A 336 O VAL A 344 SHEET 1 AA3 2 ILE A 287 LEU A 288 0 SHEET 2 AA3 2 ARG A 316 THR A 317 1 O ARG A 316 N LEU A 288 LINK OG1 THR A 297 K K A 404 1555 1555 3.08 LINK K K A 403 O HOH A 605 1555 1555 3.04 LINK K K A 403 O HOH A 605 1555 2555 3.04 LINK NA NA A 405 O HOH A 683 1555 2555 2.71 CISPEP 1 GLN A 59 PRO A 60 0 5.40 SITE 1 AC1 21 TRP A 149 MET A 166 THR A 170 GLY A 195 SITE 2 AC1 21 ASP A 218 LEU A 219 VAL A 222 ASP A 238 SITE 3 AC1 21 MET A 239 LYS A 252 CYS A 253 ILE A 254 SITE 4 AC1 21 ASP A 257 TRP A 258 HOH A 525 HOH A 574 SITE 5 AC1 21 HOH A 598 HOH A 601 HOH A 609 HOH A 610 SITE 6 AC1 21 HOH A 622 SITE 1 AC2 12 TRP A 16 TYR A 20 THR A 113 PHE A 119 SITE 2 AC2 12 PHE A 140 PHE A 162 GLY A 165 MET A 166 SITE 3 AC2 12 ASP A 169 ASP A 306 ASN A 310 EDO A 412 SITE 1 AC3 2 HIS A 124 HOH A 605 SITE 1 AC4 3 ASP A 289 THR A 297 ARG A 300 SITE 1 AC5 4 GLN A 12 TRP A 16 TYR A 296 HOH A 683 SITE 1 AC6 7 ASN A 38 HIS A 41 ASN A 42 VAL A 100 SITE 2 AC6 7 LYS A 101 TYR A 242 HOH A 510 SITE 1 AC7 5 ILE A 40 GLY A 44 SER A 45 GLY A 91 SITE 2 AC7 5 LEU A 92 SITE 1 AC8 3 HIS A 75 MET A 76 LYS A 298 SITE 1 AC9 3 PRO A 220 HIS A 221 HOH A 541 SITE 1 AD1 4 HIS A 55 ASN A 233 SER A 234 ILE A 235 SITE 1 AD2 8 SER A 10 HIS A 155 HIS A 294 PRO A 295 SITE 2 AD2 8 HOH A 504 HOH A 513 HOH A 552 HOH A 615 SITE 1 AD3 7 PHE A 162 MET A 166 ASP A 306 MET A 307 SITE 2 AD3 7 THR A 311 SAU A 402 HOH A 536 SITE 1 AD4 2 LYS A 117 ASP A 118 SITE 1 AD5 9 HIS A 55 LEU A 56 THR A 190 LYS A 213 SITE 2 AD5 9 THR A 215 ASN A 233 ASN A 245 ALA A 246 SITE 3 AD5 9 HOH A 501 SITE 1 AD6 5 TRP A 258 ASP A 259 GLU A 262 THR A 311 SITE 2 AD6 5 GLY A 312 SITE 1 AD7 3 ASP A 116 HOH A 515 HOH A 667 SITE 1 AD8 4 ASP A 116 LYS A 117 ASP A 118 LYS A 158 SITE 1 AD9 4 ASP A 150 GLU A 154 HIS A 294 DMS A 420 SITE 1 AE1 6 ASN A 5 PRO A 156 ASN A 159 GLN A 160 SITE 2 AE1 6 TYR A 350 HOH A 647 SITE 1 AE2 10 LEU A 9 GLU A 154 TYR A 296 ARG A 300 SITE 2 AE2 10 HIS A 337 SER A 339 ALA A 340 EDO A 418 SITE 3 AE2 10 HOH A 511 HOH A 565 CRYST1 73.340 109.090 40.950 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013635 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024420 0.00000 CONECT 2426 2919 CONECT 2867 2868 CONECT 2868 2867 2869 2872 CONECT 2869 2868 2870 CONECT 2870 2869 2871 CONECT 2871 2870 2875 CONECT 2872 2868 2873 2874 CONECT 2873 2872 CONECT 2874 2872 CONECT 2875 2871 2876 CONECT 2876 2875 2877 2878 CONECT 2877 2876 2882 CONECT 2878 2876 2879 2880 CONECT 2879 2878 CONECT 2880 2878 2881 2882 CONECT 2881 2880 CONECT 2882 2877 2880 2883 CONECT 2883 2882 2884 2892 CONECT 2884 2883 2885 CONECT 2885 2884 2886 CONECT 2886 2885 2887 2892 CONECT 2887 2886 2888 2889 CONECT 2888 2887 CONECT 2889 2887 2890 CONECT 2890 2889 2891 CONECT 2891 2890 2892 CONECT 2892 2883 2886 2891 CONECT 2893 2907 2908 2917 CONECT 2894 2895 2897 CONECT 2895 2894 2898 CONECT 2896 2897 2898 2900 CONECT 2897 2894 2896 CONECT 2898 2895 2896 2904 CONECT 2899 2914 2916 CONECT 2900 2896 2902 CONECT 2901 2915 2916 CONECT 2902 2900 2903 2905 CONECT 2903 2902 2904 2907 CONECT 2904 2898 2903 CONECT 2905 2902 2906 CONECT 2906 2905 2911 CONECT 2907 2893 2903 2911 CONECT 2908 2893 2909 CONECT 2909 2908 2910 2915 CONECT 2910 2909 2911 2912 CONECT 2911 2906 2907 2910 CONECT 2912 2910 2913 CONECT 2913 2912 2914 CONECT 2914 2899 2913 2915 CONECT 2915 2901 2909 2914 CONECT 2916 2899 2901 CONECT 2917 2893 CONECT 2918 3089 CONECT 2919 2426 CONECT 2921 2922 2923 CONECT 2922 2921 CONECT 2923 2921 2924 CONECT 2924 2923 CONECT 2925 2926 2927 CONECT 2926 2925 CONECT 2927 2925 2928 CONECT 2928 2927 CONECT 2929 2930 2931 CONECT 2930 2929 CONECT 2931 2929 2932 CONECT 2932 2931 CONECT 2933 2934 2935 CONECT 2934 2933 CONECT 2935 2933 2936 CONECT 2936 2935 CONECT 2937 2938 2939 CONECT 2938 2937 CONECT 2939 2937 2940 CONECT 2940 2939 CONECT 2941 2942 2943 CONECT 2942 2941 CONECT 2943 2941 2944 CONECT 2944 2943 CONECT 2945 2946 2947 CONECT 2946 2945 CONECT 2947 2945 2948 CONECT 2948 2947 CONECT 2949 2950 2951 CONECT 2950 2949 CONECT 2951 2949 2952 CONECT 2952 2951 CONECT 2953 2955 2957 CONECT 2954 2956 2958 CONECT 2955 2953 CONECT 2956 2954 CONECT 2957 2953 2959 CONECT 2958 2954 2960 CONECT 2959 2957 CONECT 2960 2958 CONECT 2961 2962 2963 CONECT 2962 2961 CONECT 2963 2961 2964 CONECT 2964 2963 CONECT 2965 2966 2967 CONECT 2966 2965 CONECT 2967 2965 2968 CONECT 2968 2967 CONECT 2969 2970 2971 CONECT 2970 2969 CONECT 2971 2969 2972 CONECT 2972 2971 CONECT 2973 2974 2975 CONECT 2974 2973 CONECT 2975 2973 2976 CONECT 2976 2975 CONECT 2977 2978 2979 2980 CONECT 2978 2977 CONECT 2979 2977 CONECT 2980 2977 CONECT 2981 2982 2983 2984 CONECT 2982 2981 CONECT 2983 2981 CONECT 2984 2981 CONECT 3089 2918 MASTER 404 0 20 20 11 0 37 6 3084 1 119 28 END