HEADER TRANSCRIPTION 23-FEB-16 5ICJ TITLE CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS TRANSCRIPTIONAL TITLE 2 REPRESSOR ETHR2 IN COMPLEX WITH BDM41420 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TETR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESIDUE 1-20 ARE THE PURIFICATION TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 ATCC: 25618; SOURCE 5 GENE: RV0078, LH57_00450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HELIX-TURN-HELIX DNA BINDING PROTEIN, TETR FAMILY, TRANSCRIPTION, KEYWDS 2 REGULATORY REPRESSOR, INHIBITOR, TRANSCRIPTION REPRESSOR-INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.WOHLKONIG,H.REMAUT,A.TANINA,F.MEYER,N.WILLAND,A.R.BAULARD, AUTHOR 2 R.WINTJENS REVDAT 3 10-JAN-24 5ICJ 1 REMARK REVDAT 2 13-DEC-17 5ICJ 1 JRNL REVDAT 1 26-APR-17 5ICJ 0 JRNL AUTH N.BLONDIAUX,M.MOUNE,M.DESROSES,R.FRITA,M.FLIPO,V.MATHYS, JRNL AUTH 2 K.SOETAERT,M.KIASS,V.DELORME,K.DJAOUT,V.TREBOSC,C.KEMMER, JRNL AUTH 3 R.WINTJENS,A.WOHLKONIG,R.ANTOINE,L.HUOT,D.HOT,M.COSCOLLA, JRNL AUTH 4 J.FELDMANN,S.GAGNEUX,C.LOCHT,P.BRODIN,M.GITZINGER,B.DEPREZ, JRNL AUTH 5 N.WILLAND,A.R.BAULARD JRNL TITL REVERSION OF ANTIBIOTIC RESISTANCE IN MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS BY SPIROISOXAZOLINE SMART-420. JRNL REF SCIENCE V. 355 1206 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28302858 JRNL DOI 10.1126/SCIENCE.AAG1006 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WOHLKONIG,H.REMAUT,M.MOUNE,A.TANINA,F.MEYER,M.DESROSES, REMARK 1 AUTH 2 J.STEYAERT,N.WILLAND,A.R.BAULARD,R.WINTJENS REMARK 1 TITL STRUCTURAL ANALYSIS OF THE INTERACTION BETWEEN REMARK 1 TITL 2 SPIROISOXAZOLINE SMART-420 AND THE MYCOBACTERIUM REMARK 1 TITL 3 TUBERCULOSIS REPRESSOR ETHR2. REMARK 1 REF BIOCHEM. BIOPHYS. RES. V. 487 403 2017 REMARK 1 REF 2 COMMUN. REMARK 1 REFN ESSN 1090-2104 REMARK 1 PMID 28416386 REMARK 1 DOI 10.1016/J.BBRC.2017.04.074 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1047 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.452 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2874 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2802 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3918 ; 1.578 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6370 ; 0.989 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 4.966 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;36.012 ;22.991 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;14.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3287 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 635 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 3.637 ; 4.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1500 ; 3.600 ; 4.814 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1873 ; 5.152 ; 7.217 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1872 ; 5.152 ; 7.219 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1369 ; 4.393 ; 5.234 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1370 ; 4.392 ; 5.234 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2046 ; 6.535 ; 7.708 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3187 ; 8.348 ;59.240 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3188 ; 8.346 ;59.232 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 12 201 B 12 201 10858 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ICJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979338 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.83 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 1.11700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.05 REMARK 200 STARTING MODEL: 5ICI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 200 MM NA CITRATE PH 4.2 REMARK 280 AND 15% POLYETHYLENE GLYCOL MONOMETHYLETHER 5000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.07000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.07000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 ARG A 11 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ILE B 3 REMARK 465 LYS B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 THR B 7 REMARK 465 GLN B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 ARG B 11 REMARK 465 SER B 84 REMARK 465 GLY B 85 REMARK 465 ALA B 86 REMARK 465 ALA B 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 188 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 196 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 104 CB SER A 104 OG -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 69Y A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 69Y B 301 DBREF 5ICJ A 1 201 UNP O53623 O53623_MYCTU 1 201 DBREF 5ICJ B 1 201 UNP O53623 O53623_MYCTU 1 201 SEQADV 5ICJ MET A -19 UNP O53623 INITIATING METHIONINE SEQADV 5ICJ GLY A -18 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER A -17 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER A -16 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A -15 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A -14 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A -13 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A -12 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A -11 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A -10 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER A -9 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER A -8 UNP O53623 EXPRESSION TAG SEQADV 5ICJ GLY A -7 UNP O53623 EXPRESSION TAG SEQADV 5ICJ LEU A -6 UNP O53623 EXPRESSION TAG SEQADV 5ICJ VAL A -5 UNP O53623 EXPRESSION TAG SEQADV 5ICJ PRO A -4 UNP O53623 EXPRESSION TAG SEQADV 5ICJ ARG A -3 UNP O53623 EXPRESSION TAG SEQADV 5ICJ GLY A -2 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER A -1 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS A 0 UNP O53623 EXPRESSION TAG SEQADV 5ICJ MET B -19 UNP O53623 INITIATING METHIONINE SEQADV 5ICJ GLY B -18 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER B -17 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER B -16 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B -15 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B -14 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B -13 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B -12 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B -11 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B -10 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER B -9 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER B -8 UNP O53623 EXPRESSION TAG SEQADV 5ICJ GLY B -7 UNP O53623 EXPRESSION TAG SEQADV 5ICJ LEU B -6 UNP O53623 EXPRESSION TAG SEQADV 5ICJ VAL B -5 UNP O53623 EXPRESSION TAG SEQADV 5ICJ PRO B -4 UNP O53623 EXPRESSION TAG SEQADV 5ICJ ARG B -3 UNP O53623 EXPRESSION TAG SEQADV 5ICJ GLY B -2 UNP O53623 EXPRESSION TAG SEQADV 5ICJ SER B -1 UNP O53623 EXPRESSION TAG SEQADV 5ICJ HIS B 0 UNP O53623 EXPRESSION TAG SEQRES 1 A 221 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 221 LEU VAL PRO ARG GLY SER HIS MET GLU ILE LYS ARG ARG SEQRES 3 A 221 THR GLN GLU GLU ARG SER ALA ALA THR ARG GLU ALA LEU SEQRES 4 A 221 ILE THR GLY ALA ARG LYS LEU TRP GLY LEU ARG GLY TYR SEQRES 5 A 221 ALA GLU VAL GLY THR PRO GLU ILE ALA THR GLU ALA GLY SEQRES 6 A 221 VAL THR ARG GLY ALA MET TYR HIS GLN PHE ALA ASP LYS SEQRES 7 A 221 ALA ALA LEU PHE ARG ASP VAL VAL GLU VAL VAL GLU GLN SEQRES 8 A 221 ASP VAL MET ALA ARG MET ALA THR LEU VAL ALA ALA SER SEQRES 9 A 221 GLY ALA ALA THR PRO ALA ASP ALA ILE ARG ALA ALA VAL SEQRES 10 A 221 ASP ALA TRP LEU GLU VAL SER GLY ASP PRO GLU VAL ARG SEQRES 11 A 221 GLN LEU ILE LEU LEU ASP ALA PRO VAL VAL LEU GLY TRP SEQRES 12 A 221 ALA GLY PHE ARG ASP VAL ALA GLN ARG TYR SER LEU GLY SEQRES 13 A 221 MET THR GLU GLN LEU ILE THR GLU ALA ILE ARG ALA GLY SEQRES 14 A 221 GLN LEU ALA ARG GLN PRO VAL ARG PRO LEU ALA GLN VAL SEQRES 15 A 221 LEU ILE GLY ALA LEU ASP GLU ALA ALA MET PHE ILE ALA SEQRES 16 A 221 THR ALA ASP ASP PRO LYS ARG ALA ARG ARG GLU THR ARG SEQRES 17 A 221 GLN VAL LEU ARG ARG LEU ILE ASP GLY MET LEU ASN GLY SEQRES 1 B 221 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 221 LEU VAL PRO ARG GLY SER HIS MET GLU ILE LYS ARG ARG SEQRES 3 B 221 THR GLN GLU GLU ARG SER ALA ALA THR ARG GLU ALA LEU SEQRES 4 B 221 ILE THR GLY ALA ARG LYS LEU TRP GLY LEU ARG GLY TYR SEQRES 5 B 221 ALA GLU VAL GLY THR PRO GLU ILE ALA THR GLU ALA GLY SEQRES 6 B 221 VAL THR ARG GLY ALA MET TYR HIS GLN PHE ALA ASP LYS SEQRES 7 B 221 ALA ALA LEU PHE ARG ASP VAL VAL GLU VAL VAL GLU GLN SEQRES 8 B 221 ASP VAL MET ALA ARG MET ALA THR LEU VAL ALA ALA SER SEQRES 9 B 221 GLY ALA ALA THR PRO ALA ASP ALA ILE ARG ALA ALA VAL SEQRES 10 B 221 ASP ALA TRP LEU GLU VAL SER GLY ASP PRO GLU VAL ARG SEQRES 11 B 221 GLN LEU ILE LEU LEU ASP ALA PRO VAL VAL LEU GLY TRP SEQRES 12 B 221 ALA GLY PHE ARG ASP VAL ALA GLN ARG TYR SER LEU GLY SEQRES 13 B 221 MET THR GLU GLN LEU ILE THR GLU ALA ILE ARG ALA GLY SEQRES 14 B 221 GLN LEU ALA ARG GLN PRO VAL ARG PRO LEU ALA GLN VAL SEQRES 15 B 221 LEU ILE GLY ALA LEU ASP GLU ALA ALA MET PHE ILE ALA SEQRES 16 B 221 THR ALA ASP ASP PRO LYS ARG ALA ARG ARG GLU THR ARG SEQRES 17 B 221 GLN VAL LEU ARG ARG LEU ILE ASP GLY MET LEU ASN GLY HET 69Y A 301 24 HET 69Y B 301 24 HETNAM 69Y 4,4,4-TRIFLUORO-1-(3-PHENYL-1-OXA-2,8- HETNAM 2 69Y DIAZASPIRO[4.5]DEC-2-EN-8-YL)BUTAN-1-ONE FORMUL 3 69Y 2(C17 H19 F3 N2 O2) FORMUL 5 HOH *3(H2 O) HELIX 1 AA1 SER A 12 GLY A 31 1 20 HELIX 2 AA2 TYR A 32 VAL A 35 5 4 HELIX 3 AA3 GLY A 36 GLY A 45 1 10 HELIX 4 AA4 THR A 47 PHE A 55 1 9 HELIX 5 AA5 ASP A 57 SER A 84 1 28 HELIX 6 AA6 THR A 88 ASP A 106 1 19 HELIX 7 AA7 ASP A 106 ILE A 113 1 8 HELIX 8 AA8 LEU A 115 ALA A 148 1 34 HELIX 9 AA9 PRO A 155 THR A 176 1 22 HELIX 10 AB1 ASP A 179 LEU A 199 1 21 HELIX 11 AB2 ALA B 13 GLY B 31 1 19 HELIX 12 AB3 TYR B 32 VAL B 35 5 4 HELIX 13 AB4 GLY B 36 GLY B 45 1 10 HELIX 14 AB5 THR B 47 PHE B 55 1 9 HELIX 15 AB6 ASP B 57 ALA B 83 1 27 HELIX 16 AB7 PRO B 89 ASP B 106 1 18 HELIX 17 AB8 ASP B 106 ILE B 113 1 8 HELIX 18 AB9 LEU B 115 ALA B 148 1 34 HELIX 19 AC1 PRO B 155 THR B 176 1 22 HELIX 20 AC2 ASP B 179 LEU B 199 1 21 SITE 1 AC1 12 GLU A 70 MET A 77 ILE A 93 ALA A 96 SITE 2 AC1 12 TRP A 100 ILE A 113 PHE A 126 ALA A 130 SITE 3 AC1 12 SER A 134 THR A 138 LEU A 167 ASP A 168 SITE 1 AC2 15 GLU B 70 MET B 74 ILE B 93 ALA B 96 SITE 2 AC2 15 VAL B 97 TRP B 100 ILE B 113 LEU B 114 SITE 3 AC2 15 PHE B 126 ALA B 130 SER B 134 THR B 138 SITE 4 AC2 15 LEU B 141 LEU B 167 ASP B 168 CRYST1 59.800 74.210 88.140 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011346 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.787281 0.578300 -0.213911 -8.42068 1 MTRIX2 2 0.570618 -0.814779 -0.102613 19.23407 1 MTRIX3 2 -0.233632 -0.041276 -0.971449 -22.96836 1