HEADER IMMUNE SYSTEM 23-FEB-16 5ICY TITLE CETUXIMAB FAB IN COMPLEX WITH LINEAR MEDITOPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CETUXIMAB FAB LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CETUXIMAB FAB HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MEDITOPE; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 10090,9606; SOURCE 4 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 10090,9606; SOURCE 9 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS ANTIBODY, ANTI-EGFR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.P.BZYMEK,J.C.WILLIAMS REVDAT 4 27-SEP-23 5ICY 1 REMARK REVDAT 3 25-DEC-19 5ICY 1 SEQRES REVDAT 2 13-DEC-17 5ICY 1 JRNL REMARK REVDAT 1 15-JUN-16 5ICY 0 JRNL AUTH K.P.BZYMEK,Y.MA,K.A.AVERY,D.A.HORNE,J.C.WILLIAMS JRNL TITL CYCLIZATION STRATEGIES OF MEDITOPES: AFFINITY AND JRNL TITL 2 DIFFRACTION STUDIES OF MEDITOPE-FAB COMPLEXES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 434 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 27303895 JRNL DOI 10.1107/S2053230X16007202 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8199 - 6.0159 1.00 2932 155 0.2007 0.2145 REMARK 3 2 6.0159 - 4.7789 1.00 2785 147 0.1507 0.1814 REMARK 3 3 4.7789 - 4.1760 1.00 2757 145 0.1237 0.1612 REMARK 3 4 4.1760 - 3.7947 1.00 2726 143 0.1398 0.1818 REMARK 3 5 3.7947 - 3.5230 1.00 2744 144 0.1521 0.1898 REMARK 3 6 3.5230 - 3.3154 1.00 2683 142 0.1546 0.1895 REMARK 3 7 3.3154 - 3.1495 1.00 2729 143 0.1542 0.2185 REMARK 3 8 3.1495 - 3.0125 1.00 2689 142 0.1608 0.2032 REMARK 3 9 3.0125 - 2.8966 1.00 2697 142 0.1661 0.2099 REMARK 3 10 2.8966 - 2.7967 1.00 2689 141 0.1666 0.2378 REMARK 3 11 2.7967 - 2.7093 1.00 2692 142 0.1758 0.2515 REMARK 3 12 2.7093 - 2.6318 1.00 2701 142 0.1807 0.2544 REMARK 3 13 2.6318 - 2.5626 1.00 2643 139 0.1819 0.2794 REMARK 3 14 2.5626 - 2.5000 0.96 2568 135 0.2106 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6971 REMARK 3 ANGLE : 1.112 9497 REMARK 3 CHIRALITY : 0.073 1070 REMARK 3 PLANARITY : 0.004 1215 REMARK 3 DIHEDRAL : 13.237 2490 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ICY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.680 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.53 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 0.1 M SODIUM REMARK 280 HYDROGEN PHOSPHATE, 0.4 M POTASSIUM HYDROGEN PHOSPHATE, 1.6 M REMARK 280 SODIUM DIHYDROGEN PHOSPHATE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 213 REMARK 465 SER B 221 REMARK 465 ALA C 213 REMARK 465 PRO D 132 REMARK 465 SER D 133 REMARK 465 SER D 134 REMARK 465 LYS D 135 REMARK 465 SER D 136 REMARK 465 THR D 137 REMARK 465 SER D 138 REMARK 465 GLY D 139 REMARK 465 SER D 221 REMARK 465 SER E 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 ARG C 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 453 O HOH D 497 1.84 REMARK 500 O HOH A 498 O HOH C 522 1.87 REMARK 500 O HOH C 510 O HOH D 485 1.92 REMARK 500 O HOH B 444 O HOH B 493 1.96 REMARK 500 O HOH A 404 O HOH B 474 1.99 REMARK 500 O HOH A 405 O HOH C 519 2.00 REMARK 500 O HOH A 426 O HOH A 442 2.02 REMARK 500 O HOH C 486 O HOH C 533 2.03 REMARK 500 O HOH D 494 O HOH D 512 2.05 REMARK 500 O HOH C 474 O HOH D 448 2.06 REMARK 500 O HOH C 508 O HOH D 411 2.08 REMARK 500 O HOH A 430 O HOH A 446 2.08 REMARK 500 O HOH B 406 O HOH B 499 2.09 REMARK 500 OE2 GLU C 161 O HOH C 401 2.11 REMARK 500 O HOH A 473 O HOH B 437 2.13 REMARK 500 O PRO A 119 O HOH A 401 2.15 REMARK 500 O GLU D 218 O HOH D 401 2.15 REMARK 500 O GLN A 166 O HOH A 402 2.15 REMARK 500 O HOH A 454 O HOH B 486 2.16 REMARK 500 O HOH A 494 O HOH A 525 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 495 O HOH C 532 3454 1.91 REMARK 500 O HOH B 487 O HOH C 472 3454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -41.83 70.94 REMARK 500 SER A 52 -7.94 -142.49 REMARK 500 ASN A 91 29.96 -141.57 REMARK 500 SER A 203 140.47 -175.71 REMARK 500 SER B 15 -10.73 79.25 REMARK 500 SER B 133 -154.96 -139.59 REMARK 500 ALA C 51 -42.63 74.41 REMARK 500 SER C 52 -4.41 -143.30 REMARK 500 SER C 77 85.12 -153.84 REMARK 500 ALA C 84 179.52 177.66 REMARK 500 SER D 15 -14.73 75.09 REMARK 500 PRO D 62 2.30 -68.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GW1 RELATED DB: PDB REMARK 900 RELATED ID: 4GW5 RELATED DB: PDB REMARK 900 RELATED ID: 4HBB RELATED DB: PDB REMARK 900 RELATED ID: 1YY8 RELATED DB: PDB REMARK 900 RELATED ID: 5ESQ RELATED DB: PDB REMARK 900 RELATED ID: 5ETU RELATED DB: PDB REMARK 900 RELATED ID: 5EUK RELATED DB: PDB REMARK 900 RELATED ID: 5F88 RELATED DB: PDB REMARK 900 RELATED ID: 5FF6 RELATED DB: PDB REMARK 900 RELATED ID: 5HPM RELATED DB: PDB REMARK 900 RELATED ID: 5HYQ RELATED DB: PDB REMARK 900 RELATED ID: 5I2I RELATED DB: PDB REMARK 900 RELATED ID: 5ICX RELATED DB: PDB REMARK 900 RELATED ID: 5ICZ RELATED DB: PDB REMARK 900 RELATED ID: 5ID0 RELATED DB: PDB REMARK 900 RELATED ID: 5ID1 RELATED DB: PDB DBREF 5ICY A 1 213 PDB 5ICY 5ICY 1 213 DBREF 5ICY B 1 221 PDB 5ICY 5ICY 1 221 DBREF 5ICY C 1 213 PDB 5ICY 5ICY 1 213 DBREF 5ICY D 1 221 PDB 5ICY 5ICY 1 221 DBREF 5ICY E 1 12 PDB 5ICY 5ICY 1 12 DBREF 5ICY F 1 12 PDB 5ICY 5ICY 1 12 SEQRES 1 A 213 ASP ILE LEU LEU THR GLN SER PRO VAL ILE LEU SER VAL SEQRES 2 A 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 A 213 GLN SER ILE GLY THR ASN ILE HIS TRP TYR GLN GLN ARG SEQRES 4 A 213 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 A 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN ASN SEQRES 8 A 213 ASN ASN TRP PRO THR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 213 PHE ASN ARG GLY ALA SEQRES 1 B 221 PCA VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 B 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 B 221 PHE SER LEU THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 B 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 B 221 SER GLY GLY ASN THR ASP TYR ASN THR PRO PHE THR SER SEQRES 6 B 221 ARG LEU SER ILE ASN LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 B 221 PHE PHE LYS MET ASN SER LEU GLN SER ASN ASP THR ALA SEQRES 8 B 221 ILE TYR TYR CYS ALA ARG ALA LEU THR TYR TYR ASP TYR SEQRES 9 B 221 GLU PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 221 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 B 221 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 B 221 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 B 221 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 B 221 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 B 221 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 B 221 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 B 221 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 1 C 213 ASP ILE LEU LEU THR GLN SER PRO VAL ILE LEU SER VAL SEQRES 2 C 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 C 213 GLN SER ILE GLY THR ASN ILE HIS TRP TYR GLN GLN ARG SEQRES 4 C 213 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 C 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 C 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 C 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN ASN SEQRES 8 C 213 ASN ASN TRP PRO THR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 C 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 C 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 C 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 C 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 C 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 C 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 C 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 C 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 C 213 PHE ASN ARG GLY ALA SEQRES 1 D 221 PCA VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 D 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 D 221 PHE SER LEU THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 D 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 D 221 SER GLY GLY ASN THR ASP TYR ASN THR PRO PHE THR SER SEQRES 6 D 221 ARG LEU SER ILE ASN LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 D 221 PHE PHE LYS MET ASN SER LEU GLN SER ASN ASP THR ALA SEQRES 8 D 221 ILE TYR TYR CYS ALA ARG ALA LEU THR TYR TYR ASP TYR SEQRES 9 D 221 GLU PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 D 221 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 D 221 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 D 221 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 D 221 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 D 221 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 D 221 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 D 221 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 D 221 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 1 E 12 SER GLN PHE ASP LEU SER THR ARG ARG LEU LYS SER SEQRES 1 F 12 SER GLN PHE ASP LEU SER THR ARG ARG LEU LYS SER MODRES 5ICY PCA B 1 GLN PYROGLUTAMIC ACID MODRES 5ICY PCA D 1 GLN PYROGLUTAMIC ACID HET PCA B 1 8 HET PCA D 1 8 HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 B 301 5 HET PO4 B 302 5 HET PO4 C 301 5 HET PO4 D 301 5 HET PO4 D 302 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 2 PCA 2(C5 H7 N O3) FORMUL 7 PO4 7(O4 P 3-) FORMUL 14 HOH *508(H2 O) HELIX 1 AA1 GLU A 79 ILE A 83 5 5 HELIX 2 AA2 SER A 121 LYS A 126 1 6 HELIX 3 AA3 LYS A 183 LYS A 188 1 6 HELIX 4 AA4 THR B 61 THR B 64 5 4 HELIX 5 AA5 GLN B 86 THR B 90 5 5 HELIX 6 AA6 SER B 162 ALA B 164 5 3 HELIX 7 AA7 SER B 193 LEU B 195 5 3 HELIX 8 AA8 LYS B 207 ASN B 210 5 4 HELIX 9 AA9 GLU C 79 ILE C 83 5 5 HELIX 10 AB1 SER C 121 LYS C 126 1 6 HELIX 11 AB2 LYS C 183 LYS C 188 1 6 HELIX 12 AB3 THR D 61 THR D 64 5 4 HELIX 13 AB4 GLN D 86 THR D 90 5 5 HELIX 14 AB5 SER D 162 ALA D 164 5 3 HELIX 15 AB6 SER D 193 LEU D 195 5 3 HELIX 16 AB7 LYS D 207 ASN D 210 5 4 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O LEU A 73 N PHE A 21 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N SER A 63 O SER A 74 SHEET 1 AA2 6 ILE A 10 VAL A 13 0 SHEET 2 AA2 6 THR A 102 LEU A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AA2 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA2 6 ILE A 33 GLN A 38 -1 N GLN A 38 O ASP A 85 SHEET 5 AA2 6 ARG A 45 LYS A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 AA2 6 GLU A 53 SER A 54 -1 O GLU A 53 N LYS A 49 SHEET 1 AA3 4 ILE A 10 VAL A 13 0 SHEET 2 AA3 4 THR A 102 LEU A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O SER A 177 N CYS A 134 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O ALA A 193 N LYS A 149 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 GLN B 6 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O THR B 23 N LYS B 5 SHEET 3 AA6 4 GLN B 77 MET B 82 -1 O PHE B 80 N ILE B 20 SHEET 4 AA6 4 LEU B 67 ASP B 72 -1 N ASN B 70 O PHE B 79 SHEET 1 AA7 6 GLY B 10 VAL B 12 0 SHEET 2 AA7 6 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA7 6 ALA B 91 ALA B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA7 6 VAL B 34 SER B 40 -1 N VAL B 37 O TYR B 94 SHEET 5 AA7 6 GLY B 44 ILE B 51 -1 O GLY B 49 N TRP B 36 SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O ASP B 58 N VAL B 50 SHEET 1 AA8 4 GLY B 10 VAL B 12 0 SHEET 2 AA8 4 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA8 4 ALA B 91 ALA B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA8 4 PHE B 106 TRP B 109 -1 O TYR B 108 N ARG B 97 SHEET 1 AA9 4 SER B 126 LEU B 130 0 SHEET 2 AA9 4 THR B 141 TYR B 151 -1 O GLY B 145 N LEU B 130 SHEET 3 AA9 4 TYR B 182 PRO B 191 -1 O LEU B 184 N VAL B 148 SHEET 4 AA9 4 VAL B 169 THR B 171 -1 N HIS B 170 O VAL B 187 SHEET 1 AB1 4 THR B 137 SER B 138 0 SHEET 2 AB1 4 THR B 141 TYR B 151 -1 O THR B 141 N SER B 138 SHEET 3 AB1 4 TYR B 182 PRO B 191 -1 O LEU B 184 N VAL B 148 SHEET 4 AB1 4 VAL B 175 LEU B 176 -1 N VAL B 175 O SER B 183 SHEET 1 AB2 3 THR B 157 TRP B 160 0 SHEET 2 AB2 3 ILE B 201 HIS B 206 -1 O ASN B 203 N SER B 159 SHEET 3 AB2 3 THR B 211 ARG B 216 -1 O THR B 211 N HIS B 206 SHEET 1 AB3 4 LEU C 4 SER C 7 0 SHEET 2 AB3 4 VAL C 19 ALA C 25 -1 O ARG C 24 N THR C 5 SHEET 3 AB3 4 ASP C 70 ILE C 75 -1 O LEU C 73 N PHE C 21 SHEET 4 AB3 4 PHE C 62 SER C 67 -1 N SER C 63 O SER C 74 SHEET 1 AB4 6 ILE C 10 VAL C 13 0 SHEET 2 AB4 6 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AB4 6 ASP C 85 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 AB4 6 ILE C 33 GLN C 38 -1 N HIS C 34 O GLN C 89 SHEET 5 AB4 6 ARG C 45 LYS C 49 -1 O ARG C 45 N GLN C 37 SHEET 6 AB4 6 GLU C 53 SER C 54 -1 O GLU C 53 N LYS C 49 SHEET 1 AB5 4 ILE C 10 VAL C 13 0 SHEET 2 AB5 4 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AB5 4 ASP C 85 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 AB5 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 AB6 4 SER C 114 PHE C 118 0 SHEET 2 AB6 4 THR C 129 PHE C 139 -1 O LEU C 135 N PHE C 116 SHEET 3 AB6 4 TYR C 173 SER C 182 -1 O LEU C 175 N LEU C 136 SHEET 4 AB6 4 SER C 159 VAL C 163 -1 N GLN C 160 O THR C 178 SHEET 1 AB7 4 ALA C 153 LEU C 154 0 SHEET 2 AB7 4 LYS C 145 VAL C 150 -1 N VAL C 150 O ALA C 153 SHEET 3 AB7 4 VAL C 191 THR C 197 -1 O GLU C 195 N GLN C 147 SHEET 4 AB7 4 VAL C 205 ASN C 210 -1 O VAL C 205 N VAL C 196 SHEET 1 AB8 4 GLN D 3 GLN D 6 0 SHEET 2 AB8 4 LEU D 18 SER D 25 -1 O THR D 23 N LYS D 5 SHEET 3 AB8 4 GLN D 77 MET D 82 -1 O VAL D 78 N CYS D 22 SHEET 4 AB8 4 LEU D 67 ASP D 72 -1 N ASN D 70 O PHE D 79 SHEET 1 AB9 6 GLY D 10 VAL D 12 0 SHEET 2 AB9 6 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AB9 6 ALA D 91 ALA D 98 -1 N ALA D 91 O VAL D 115 SHEET 4 AB9 6 VAL D 34 SER D 40 -1 N VAL D 37 O TYR D 94 SHEET 5 AB9 6 GLY D 44 ILE D 51 -1 O LEU D 48 N TRP D 36 SHEET 6 AB9 6 THR D 57 TYR D 59 -1 O ASP D 58 N VAL D 50 SHEET 1 AC1 4 GLY D 10 VAL D 12 0 SHEET 2 AC1 4 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AC1 4 ALA D 91 ALA D 98 -1 N ALA D 91 O VAL D 115 SHEET 4 AC1 4 PHE D 106 TRP D 109 -1 O TYR D 108 N ARG D 97 SHEET 1 AC2 4 SER D 126 LEU D 130 0 SHEET 2 AC2 4 THR D 141 TYR D 151 -1 O LEU D 147 N PHE D 128 SHEET 3 AC2 4 TYR D 182 PRO D 191 -1 O VAL D 190 N ALA D 142 SHEET 4 AC2 4 VAL D 169 THR D 171 -1 N HIS D 170 O VAL D 187 SHEET 1 AC3 4 SER D 126 LEU D 130 0 SHEET 2 AC3 4 THR D 141 TYR D 151 -1 O LEU D 147 N PHE D 128 SHEET 3 AC3 4 TYR D 182 PRO D 191 -1 O VAL D 190 N ALA D 142 SHEET 4 AC3 4 VAL D 175 LEU D 176 -1 N VAL D 175 O SER D 183 SHEET 1 AC4 3 THR D 157 TRP D 160 0 SHEET 2 AC4 3 ILE D 201 HIS D 206 -1 O ASN D 203 N SER D 159 SHEET 3 AC4 3 THR D 211 ARG D 216 -1 O VAL D 213 N VAL D 204 SHEET 1 AC5 2 PHE E 3 ASP E 4 0 SHEET 2 AC5 2 ARG E 9 LEU E 10 -1 O ARG E 9 N ASP E 4 SHEET 1 AC6 2 GLN F 2 ASP F 4 0 SHEET 2 AC6 2 ARG F 9 LYS F 11 -1 O LYS F 11 N GLN F 2 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.06 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.05 SSBOND 4 CYS B 146 CYS B 202 1555 1555 2.01 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.05 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.02 SSBOND 7 CYS D 22 CYS D 95 1555 1555 2.06 SSBOND 8 CYS D 146 CYS D 202 1555 1555 2.03 LINK C PCA B 1 N VAL B 2 1555 1555 1.33 LINK C PCA D 1 N VAL D 2 1555 1555 1.33 CISPEP 1 SER A 7 PRO A 8 0 -9.63 CISPEP 2 TRP A 94 PRO A 95 0 1.38 CISPEP 3 TYR A 140 PRO A 141 0 5.05 CISPEP 4 PHE B 152 PRO B 153 0 -0.58 CISPEP 5 GLU B 154 PRO B 155 0 -1.62 CISPEP 6 SER C 7 PRO C 8 0 -6.08 CISPEP 7 TRP C 94 PRO C 95 0 -0.05 CISPEP 8 TYR C 140 PRO C 141 0 5.79 CISPEP 9 PHE D 152 PRO D 153 0 -2.98 CISPEP 10 GLU D 154 PRO D 155 0 -2.22 SITE 1 AC1 5 GLU A 165 ASP A 167 HOH A 426 HIS B 170 SITE 2 AC1 5 HOH B 441 SITE 1 AC2 6 PHE A 98 ALA A 100 HOH A 429 LYS B 43 SITE 2 AC2 6 LEU B 45 HOH B 424 SITE 1 AC3 4 SER B 126 VAL B 127 HOH B 416 SER C 156 SITE 1 AC4 2 ASN B 205 ASN B 210 SITE 1 AC5 9 GLU C 165 ASP C 167 HOH C 402 HOH C 403 SITE 2 AC5 9 HOH C 434 HOH C 448 HOH C 453 VAL D 169 SITE 3 AC5 9 HIS D 170 SITE 1 AC6 3 ASN D 205 ASN D 210 LYS D 212 SITE 1 AC7 4 GLU C 123 SER D 126 VAL D 127 HOH D 407 CRYST1 64.180 82.890 212.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004697 0.00000