HEADER TRANSFERASE 24-FEB-16 5IDO TITLE RNA EDITING TUTASE 1 FROM TRYPANOSOMA BRUCEI IN COMPLEX WITH UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3' TERMINAL URIDYLYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 189-699; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: 3' TUTASE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA EDITING TUTASE1, TRANSFERASE, TRYPANOSOMA BRUCEI EXPDTA X-RAY DIFFRACTION AUTHOR S.THORE,L.T.RAJAPPA REVDAT 3 10-JAN-24 5IDO 1 LINK REVDAT 2 28-DEC-16 5IDO 1 JRNL REVDAT 1 26-OCT-16 5IDO 0 JRNL AUTH L.RAJAPPA-TITU,T.SUEMATSU,P.MUNOZ-TELLO,M.LONG,O.DEMIR, JRNL AUTH 2 K.J.CHENG,J.R.STAGNO,H.LUECKE,R.E.AMARO,I.APHASIZHEVA, JRNL AUTH 3 R.APHASIZHEV,S.THORE JRNL TITL RNA EDITING TUTASE 1: STRUCTURAL FOUNDATION OF SUBSTRATE JRNL TITL 2 RECOGNITION, COMPLEX INTERACTIONS AND DRUG TARGETING. JRNL REF NUCLEIC ACIDS RES. V. 44 10862 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27744351 JRNL DOI 10.1093/NAR/GKW917 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7281 - 4.5594 0.98 2893 153 0.2124 0.2296 REMARK 3 2 4.5594 - 3.6263 1.00 2839 148 0.2313 0.2679 REMARK 3 3 3.6263 - 3.1701 1.00 2781 146 0.2519 0.3124 REMARK 3 4 3.1701 - 2.8812 1.00 2788 147 0.2789 0.3195 REMARK 3 5 2.8812 - 2.6752 1.00 2768 146 0.2906 0.3516 REMARK 3 6 2.6752 - 2.5178 1.00 2780 145 0.2914 0.3246 REMARK 3 7 2.5178 - 2.3919 1.00 2741 144 0.2643 0.3346 REMARK 3 8 2.3919 - 2.2880 1.00 2723 143 0.2593 0.2898 REMARK 3 9 2.2880 - 2.2000 0.99 2760 146 0.2671 0.3370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3899 REMARK 3 ANGLE : 0.778 5305 REMARK 3 CHIRALITY : 0.030 581 REMARK 3 PLANARITY : 0.003 678 REMARK 3 DIHEDRAL : 14.422 1425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 140.8686 90.6438 23.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.1634 T22: 0.0495 REMARK 3 T33: 0.0168 T12: 0.0449 REMARK 3 T13: -0.0525 T23: -0.0992 REMARK 3 L TENSOR REMARK 3 L11: 0.0273 L22: -0.0139 REMARK 3 L33: 0.1801 L12: -0.0379 REMARK 3 L13: -0.0560 L23: 0.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.1411 S12: -0.1297 S13: -0.3183 REMARK 3 S21: 0.0628 S22: -0.3787 S23: -0.0410 REMARK 3 S31: -0.1305 S32: -0.0025 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 126.3744 74.7651 40.3773 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.1740 REMARK 3 T33: 0.2500 T12: -0.0599 REMARK 3 T13: -0.0123 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0051 L22: 0.0040 REMARK 3 L33: -0.0007 L12: 0.0013 REMARK 3 L13: -0.0016 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.0410 S13: -0.0300 REMARK 3 S21: -0.0185 S22: -0.0483 S23: 0.0412 REMARK 3 S31: -0.0018 S32: -0.0818 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 142.5651 74.8266 38.2901 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1043 REMARK 3 T33: 0.1340 T12: -0.0245 REMARK 3 T13: -0.0217 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0410 L22: 0.0095 REMARK 3 L33: 0.0526 L12: -0.0096 REMARK 3 L13: -0.1168 L23: -0.0251 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.0050 S13: -0.1200 REMARK 3 S21: -0.0124 S22: -0.1058 S23: -0.1142 REMARK 3 S31: 0.0177 S32: 0.0282 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 572 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 141.3220 96.0798 13.6351 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.2034 REMARK 3 T33: 0.1587 T12: 0.0421 REMARK 3 T13: -0.0483 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 0.0346 L22: 0.0105 REMARK 3 L33: 0.0805 L12: 0.0187 REMARK 3 L13: -0.0296 L23: -0.0625 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.0322 S13: -0.1243 REMARK 3 S21: -0.0342 S22: -0.0256 S23: -0.1134 REMARK 3 S31: -0.2608 S32: -0.1541 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HZD REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, BETWEEN 5% AND 8% PEG REMARK 280 3350, 0.2M LITHIUM CHLORIDE.COMPLEX OF D473A WITH UTP WAS REMARK 280 OBTAINED BY SOAKING 1.5MM UTP SUPPLEMENTED WITH 1MM MGCL2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.67500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.45500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.45500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 188 REMARK 465 GLY A 189 REMARK 465 ILE A 370 REMARK 465 LEU A 371 REMARK 465 THR A 372 REMARK 465 VAL A 373 REMARK 465 ALA A 374 REMARK 465 ARG A 375 REMARK 465 ARG A 376 REMARK 465 ASP A 377 REMARK 465 ALA A 378 REMARK 465 GLU A 379 REMARK 465 PRO A 626 REMARK 465 VAL A 627 REMARK 465 ALA A 628 REMARK 465 SER A 629 REMARK 465 THR A 630 REMARK 465 SER A 631 REMARK 465 VAL A 632 REMARK 465 SER A 633 REMARK 465 SER A 634 REMARK 465 GLY A 635 REMARK 465 GLY A 636 REMARK 465 GLY A 637 REMARK 465 GLY A 638 REMARK 465 SER A 639 REMARK 465 ASN A 640 REMARK 465 VAL A 641 REMARK 465 LYS A 642 REMARK 465 ARG A 643 REMARK 465 GLY A 689 REMARK 465 GLU A 690 REMARK 465 THR A 691 REMARK 465 ARG A 692 REMARK 465 SER A 693 REMARK 465 CYS A 694 REMARK 465 VAL A 695 REMARK 465 PHE A 696 REMARK 465 ALA A 697 REMARK 465 ALA A 698 REMARK 465 ALA A 699 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 230 O HOH A 801 2.01 REMARK 500 O HOH A 844 O HOH A 963 2.16 REMARK 500 OG1 THR A 204 O HOH A 802 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 217 26.03 -144.70 REMARK 500 PRO A 328 -172.00 -68.17 REMARK 500 ILE A 354 69.97 -115.54 REMARK 500 HIS A 356 73.90 -103.72 REMARK 500 ASN A 515 83.23 -171.00 REMARK 500 ASP A 557 48.59 -97.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 198 SG 119.1 REMARK 620 3 HIS A 212 NE2 108.4 109.1 REMARK 620 4 HIS A 217 NE2 107.4 108.0 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UTP A 701 O2A REMARK 620 2 UTP A 701 O1B 72.5 REMARK 620 3 UTP A 701 O1G 85.6 73.7 REMARK 620 4 HOH A 936 O 136.8 77.0 114.3 REMARK 620 5 HOH A 949 O 95.4 97.4 170.4 58.9 REMARK 620 6 HOH A 952 O 104.6 177.1 106.0 105.6 83.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UTP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I49 RELATED DB: PDB REMARK 900 THIS IS THE SAME PROTEIN AS 5I49, EXCEPT THAT IT IS A CATALYTICALLY REMARK 900 DEAD MUTANT D473A COMPLEXED WITH UTP IN THE ACTIVE SITE. DBREF 5IDO A 189 699 UNP Q8WQX5 Q8WQX5_9TRYP 189 699 SEQADV 5IDO MET A 188 UNP Q8WQX5 INITIATING METHIONINE SEQADV 5IDO ALA A 473 UNP Q8WQX5 ASP 473 CONFLICT SEQRES 1 A 512 MET GLY VAL ARG LEU TYR SER CYS ASP ALA CYS PRO HIS SEQRES 2 A 512 ALA VAL PHE THR THR HIS ALA ALA LEU LEU ALA HIS ALA SEQRES 3 A 512 GLU GLU HIS HIS ALA ASP LEU LEU PRO ASP HIS ALA ARG SEQRES 4 A 512 LEU ARG ARG ILE ALA GLN LYS LEU ASN PRO VAL TRP ASN SEQRES 5 A 512 ARG ALA LEU ASN ALA ARG ARG ASN THR ILE THR SER TRP SEQRES 6 A 512 GLY LYS LYS ILE PHE HIS VAL ALA ALA GLN ARG ASP ALA SEQRES 7 A 512 GLY GLU SER LYS MET GLN GLU ALA HIS ARG ALA ARG ALA SEQRES 8 A 512 GLN LEU GLU CYS VAL VAL ARG ARG TRP HIS ASP LYS ALA SEQRES 9 A 512 ARG VAL PHE ILE PHE GLY SER SER VAL ALA MET GLY VAL SEQRES 10 A 512 TRP ASP GLY THR ALA ASP ILE ASP PHE ALA VAL VAL ASP SEQRES 11 A 512 VAL ASP ALA MET GLU ARG GLY SER TRP PRO PRO LEU GLU SEQRES 12 A 512 LYS ASN ALA VAL ARG SER ILE THR GLU LEU LEU ARG ARG SEQRES 13 A 512 VAL GLY PHE SER PHE VAL ASN LEU GLU PRO ILE SER HIS SEQRES 14 A 512 ALA ARG VAL PRO ILE ILE LYS HIS HIS ALA SER SER PRO SEQRES 15 A 512 ILE LEU THR VAL ALA ARG ARG ASP ALA GLU ASP VAL VAL SEQRES 16 A 512 ALA ARG SER ILE ARG PHE ILE LEU ASN GLY PRO ALA THR SEQRES 17 A 512 ARG GLU ASP ARG LEU LEU LEU GLU GLY SER VAL ARG ASP SEQRES 18 A 512 ALA VAL GLY PRO THR GLY VAL GLN GLN VAL TRP TRP ASN SEQRES 19 A 512 ARG THR SER ASP MET MET SER ALA THR LEU GLU SER THR SEQRES 20 A 512 THR ALA ALA VAL ARG ALA ALA MET CYS SER PRO ALA LEU SEQRES 21 A 512 ALA SER ALA SER LEU ARG THR LYS VAL GLN PRO ALA HIS SEQRES 22 A 512 ASP GLU CYS ARG PRO GLU LEU TYR ASN ILE ASP PHE ALA SEQRES 23 A 512 LEU SER PHE ARG ALA PHE GLY ILE ARG ASN SER THR LEU SEQRES 24 A 512 LEU ARG LYS TYR LEU LEU SER HIS PRO CYS ALA ARG PRO SEQRES 25 A 512 GLY ALA ILE VAL LEU LYS ASP TRP SER LYS THR SER GLY SEQRES 26 A 512 VAL ASN ASN SER VAL ASN GLY TYR PHE THR SER TYR ALA SEQRES 27 A 512 ILE ASN ILE MET TRP ILE TYR TYR LEU VAL GLN LYS GLY SEQRES 28 A 512 TYR VAL PRO TYR VAL ASP PRO LEU GLU ILE PRO GLU SER SEQRES 29 A 512 LEU VAL ASN TYR THR ASP PHE ASP PRO ARG TYR THR PRO SEQRES 30 A 512 MET ILE ASP PRO GLU ILE THR ASN THR GLU ARG GLU GLU SEQRES 31 A 512 LEU TYR LYS ALA ALA GLY ASP MET LEU VAL GLY PHE PHE SEQRES 32 A 512 TYR PHE TYR SER PHE GLU PHE ASP TRP GLY HIS ASN VAL SEQRES 33 A 512 ILE SER LEU ASN ARG PRO GLY ILE THR THR LYS ARG MET SEQRES 34 A 512 LEU GLY TRP HIS VAL GLU ASP VAL VAL PRO VAL ALA SER SEQRES 35 A 512 THR SER VAL SER SER GLY GLY GLY GLY SER ASN VAL LYS SEQRES 36 A 512 ARG HIS PRO THR ARG TYR GLU LEU CYS ILE GLU ASP PRO SEQRES 37 A 512 TYR GLU GLU ASN LEU ASN LEU GLY ARG HIS ILE GLY VAL SEQRES 38 A 512 THR LYS SER LEU ARG VAL ARG THR GLU LEU TYR ARG GLY SEQRES 39 A 512 LEU LEU SER LEU LEU LYS GLU GLY GLU THR ARG SER CYS SEQRES 40 A 512 VAL PHE ALA ALA ALA HET UTP A 701 29 HET ZN A 702 1 HET MG A 703 1 HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 2 UTP C9 H15 N2 O15 P3 FORMUL 3 ZN ZN 2+ FORMUL 4 MG MG 2+ FORMUL 5 HOH *171(H2 O) HELIX 1 AA1 THR A 205 HIS A 217 1 13 HELIX 2 AA2 ASP A 223 LYS A 233 1 11 HELIX 3 AA3 LEU A 234 PRO A 236 5 3 HELIX 4 AA4 VAL A 237 ARG A 245 1 9 HELIX 5 AA5 ARG A 245 ASP A 264 1 20 HELIX 6 AA6 GLY A 266 HIS A 288 1 23 HELIX 7 AA7 GLY A 297 GLY A 303 1 7 HELIX 8 AA8 VAL A 318 GLY A 324 1 7 HELIX 9 AA9 LEU A 329 VAL A 344 1 16 HELIX 10 AB1 ASP A 380 ALA A 383 5 4 HELIX 11 AB2 THR A 395 GLY A 411 1 17 HELIX 12 AB3 SER A 433 MET A 442 1 10 HELIX 13 AB4 PRO A 465 ILE A 470 5 6 HELIX 14 AB5 ALA A 478 SER A 493 1 16 HELIX 15 AB6 CYS A 496 SER A 511 1 16 HELIX 16 AB7 ASN A 515 GLY A 519 5 5 HELIX 17 AB8 THR A 522 LYS A 537 1 16 HELIX 18 AB9 ASP A 544 ILE A 548 5 5 HELIX 19 AC1 THR A 571 GLU A 596 1 26 HELIX 20 AC2 ARG A 615 GLY A 618 5 4 HELIX 21 AC3 GLY A 667 LEU A 685 1 19 SHEET 1 AA1 2 TYR A 193 SER A 194 0 SHEET 2 AA1 2 VAL A 202 PHE A 203 -1 O PHE A 203 N TYR A 193 SHEET 1 AA2 5 ALA A 291 PHE A 296 0 SHEET 2 AA2 5 ILE A 311 ASP A 317 -1 O ALA A 314 N PHE A 294 SHEET 3 AA2 5 PHE A 472 SER A 475 1 O ALA A 473 N PHE A 313 SHEET 4 AA2 5 ILE A 361 HIS A 364 -1 N ILE A 362 O LEU A 474 SHEET 5 AA2 5 LEU A 351 ILE A 354 -1 N GLU A 352 O LYS A 363 SHEET 1 AA3 4 VAL A 415 TRP A 420 0 SHEET 2 AA3 4 MET A 426 LEU A 431 -1 O THR A 430 N GLN A 416 SHEET 3 AA3 4 SER A 385 LEU A 390 -1 N ILE A 386 O ALA A 429 SHEET 4 AA3 4 THR A 454 PRO A 458 -1 O LYS A 455 N ILE A 389 SHEET 1 AA4 2 ASN A 602 VAL A 603 0 SHEET 2 AA4 2 THR A 612 THR A 613 -1 O THR A 612 N VAL A 603 LINK SG CYS A 195 ZN ZN A 702 1555 1555 2.75 LINK SG CYS A 198 ZN ZN A 702 1555 1555 2.86 LINK NE2 HIS A 212 ZN ZN A 702 1555 1555 2.49 LINK NE2 HIS A 217 ZN ZN A 702 1555 1555 2.45 LINK O2A UTP A 701 MG MG A 703 1555 1555 2.13 LINK O1B UTP A 701 MG MG A 703 1555 1555 2.37 LINK O1G UTP A 701 MG MG A 703 1555 1555 2.01 LINK MG MG A 703 O HOH A 936 1555 1555 2.50 LINK MG MG A 703 O HOH A 949 1555 1555 2.21 LINK MG MG A 703 O HOH A 952 1555 1555 2.01 CISPEP 1 TRP A 326 PRO A 327 0 3.05 SITE 1 AC1 12 PHE A 479 GLY A 480 ASN A 483 SER A 484 SITE 2 AC1 12 LYS A 505 LYS A 509 SER A 523 TYR A 524 SITE 3 AC1 12 MG A 703 HOH A 895 HOH A 902 HOH A 936 SITE 1 AC2 4 CYS A 195 CYS A 198 HIS A 212 HIS A 217 SITE 1 AC3 4 UTP A 701 HOH A 936 HOH A 949 HOH A 952 CRYST1 59.350 66.340 128.910 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016849 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007757 0.00000