HEADER OXIDOREDUCTASE 24-FEB-16 5IDX TITLE CRYSTAL STRUCTURE OF AN OXIDOREDUCTASE FROM BURKHOLDERIA VIETNAMIENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA VIETNAMIENSIS (STRAIN G4 / LMG SOURCE 3 22486); SOURCE 4 ORGANISM_TAXID: 269482; SOURCE 5 STRAIN: G4 / LMG 22486; SOURCE 6 GENE: BCEP1808_2377; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BUVIA.00010.K.B1 KEYWDS SSGCID, OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY, KEYWDS 2 BURKHOLDERIA VIETNAMIENSIS, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5IDX 1 REMARK REVDAT 1 16-MAR-16 5IDX 0 JRNL AUTH S.J.MAYCLIN,J.ABENDROTH,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF AN OXIDOREDUCTASE FROM BURKHOLDERIA JRNL TITL 2 VIETNAMIENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2313 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1776 - 4.6980 1.00 3726 142 0.1555 0.1730 REMARK 3 2 4.6980 - 3.7295 1.00 3569 101 0.1343 0.1727 REMARK 3 3 3.7295 - 3.2582 1.00 3493 139 0.1516 0.1842 REMARK 3 4 3.2582 - 2.9604 1.00 3517 114 0.1618 0.1904 REMARK 3 5 2.9604 - 2.7482 1.00 3426 164 0.1703 0.1982 REMARK 3 6 2.7482 - 2.5862 1.00 3452 133 0.1724 0.2287 REMARK 3 7 2.5862 - 2.4567 1.00 3409 155 0.1669 0.2189 REMARK 3 8 2.4567 - 2.3498 1.00 3419 156 0.1658 0.2117 REMARK 3 9 2.3498 - 2.2593 1.00 3390 149 0.1583 0.1734 REMARK 3 10 2.2593 - 2.1814 1.00 3456 118 0.1691 0.2037 REMARK 3 11 2.1814 - 2.1132 1.00 3374 161 0.1791 0.2156 REMARK 3 12 2.1132 - 2.0528 1.00 3402 140 0.1830 0.2500 REMARK 3 13 2.0528 - 1.9987 1.00 3414 135 0.1894 0.2598 REMARK 3 14 1.9987 - 1.9500 1.00 3387 148 0.2105 0.2601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3846 REMARK 3 ANGLE : 0.713 5253 REMARK 3 CHIRALITY : 0.050 623 REMARK 3 PLANARITY : 0.005 696 REMARK 3 DIHEDRAL : 12.945 2285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6492 11.7854 23.6457 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.2336 REMARK 3 T33: 0.1864 T12: -0.0054 REMARK 3 T13: 0.0234 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 3.5212 L22: 4.3505 REMARK 3 L33: 2.1007 L12: 0.9157 REMARK 3 L13: -0.9761 L23: -1.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: -0.2918 S13: -0.0243 REMARK 3 S21: 0.1552 S22: -0.0783 S23: -0.2720 REMARK 3 S31: 0.0697 S32: 0.2618 S33: 0.1377 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2922 20.1557 22.2109 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.2025 REMARK 3 T33: 0.1551 T12: -0.0292 REMARK 3 T13: 0.0154 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.4136 L22: 3.4889 REMARK 3 L33: 1.9069 L12: -0.7782 REMARK 3 L13: -0.6807 L23: 1.6235 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.0506 S13: 0.0993 REMARK 3 S21: 0.0319 S22: -0.0559 S23: -0.0417 REMARK 3 S31: 0.0595 S32: 0.0195 S33: 0.0839 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1058 11.2549 37.3825 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.2836 REMARK 3 T33: 0.2619 T12: -0.0516 REMARK 3 T13: 0.0283 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.4946 L22: 1.4328 REMARK 3 L33: 2.8272 L12: -0.3243 REMARK 3 L13: -0.2072 L23: -0.6629 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: -0.4765 S13: 0.3211 REMARK 3 S21: 0.2812 S22: 0.0258 S23: -0.1269 REMARK 3 S31: -0.3591 S32: 0.1692 S33: 0.0367 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0789 46.7051 17.6997 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.1547 REMARK 3 T33: 0.2136 T12: -0.0115 REMARK 3 T13: 0.0168 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.8163 L22: 2.9032 REMARK 3 L33: 2.1818 L12: 0.2579 REMARK 3 L13: 0.1787 L23: -0.8566 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.1626 S13: 0.3956 REMARK 3 S21: -0.1854 S22: -0.0114 S23: -0.0243 REMARK 3 S31: -0.2794 S32: 0.0795 S33: 0.0129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0114 31.5350 22.0933 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1611 REMARK 3 T33: 0.1287 T12: -0.0165 REMARK 3 T13: -0.0042 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.5613 L22: 2.1495 REMARK 3 L33: 2.6606 L12: -1.2403 REMARK 3 L13: -1.6522 L23: 1.1304 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.1556 S13: 0.0914 REMARK 3 S21: -0.1082 S22: -0.0716 S23: -0.0804 REMARK 3 S31: -0.0023 S32: 0.0571 S33: 0.0333 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8727 28.3055 2.1822 REMARK 3 T TENSOR REMARK 3 T11: 0.4365 T22: 0.4302 REMARK 3 T33: 0.2747 T12: 0.0120 REMARK 3 T13: 0.0948 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.6130 L22: 2.7018 REMARK 3 L33: 3.7637 L12: 0.5475 REMARK 3 L13: -0.9759 L23: 1.0494 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.7139 S13: -0.1265 REMARK 3 S21: -0.9693 S22: 0.1147 S23: -0.5054 REMARK 3 S31: -0.0470 S32: 0.3094 S33: -0.0112 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8096 24.9353 17.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1740 REMARK 3 T33: 0.1421 T12: -0.0138 REMARK 3 T13: 0.0364 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.7941 L22: 2.0447 REMARK 3 L33: 1.2860 L12: 0.0370 REMARK 3 L13: 0.3341 L23: -0.0456 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: 0.2433 S13: -0.0815 REMARK 3 S21: -0.3062 S22: 0.0113 S23: -0.0320 REMARK 3 S31: 0.0974 S32: 0.0463 S33: -0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1O5I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 C8 (269601C8): 200MM AMMONIUM REMARK 280 SULFATE, 100MM SODIUM CITRATE-HCL PH5.6, 25% PEG4000, 4MM NAD; REMARK 280 PROTEIN CONC. 21.43MG/ML; 20% EG CRYO; PUCK DOM8-6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.02500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.53750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.51250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.53750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.51250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -341.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.02500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 ASN A 200 CG OD1 ND2 REMARK 470 GLN A 202 CG CD OE1 NE2 REMARK 470 VAL A 204 CG1 CG2 REMARK 470 THR A 205 OG1 CG2 REMARK 470 VAL A 206 CG1 CG2 REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 HIS B -3 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 ASN B 200 CG OD1 ND2 REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 470 VAL B 204 CG1 CG2 REMARK 470 THR B 205 OG1 CG2 REMARK 470 VAL B 206 CG1 CG2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 408 O HOH B 595 2.11 REMARK 500 OE2 GLU A 110 O HOH A 401 2.13 REMARK 500 O4 SO4 A 302 O HOH A 402 2.14 REMARK 500 O HOH A 562 O HOH A 583 2.15 REMARK 500 OD2 ASP B 148 O HOH B 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 521 O HOH B 465 3554 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 113 -60.46 -133.09 REMARK 500 THR A 139 -115.82 -111.63 REMARK 500 HIS B 0 155.15 65.51 REMARK 500 MET B 113 -57.36 -135.88 REMARK 500 THR B 139 -113.23 -111.09 REMARK 500 ASP B 251 18.00 -141.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IDW RELATED DB: PDB REMARK 900 RELATED ID: 5IDY RELATED DB: PDB DBREF 5IDX A 1 259 UNP A4JGH3 A4JGH3_BURVG 1 259 DBREF 5IDX B 1 259 UNP A4JGH3 A4JGH3_BURVG 1 259 SEQADV 5IDX MET A -7 UNP A4JGH3 INITIATING METHIONINE SEQADV 5IDX ALA A -6 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS A -5 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS A -4 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS A -3 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS A -2 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS A -1 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS A 0 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX MET B -7 UNP A4JGH3 INITIATING METHIONINE SEQADV 5IDX ALA B -6 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS B -5 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS B -4 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS B -3 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS B -2 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS B -1 UNP A4JGH3 EXPRESSION TAG SEQADV 5IDX HIS B 0 UNP A4JGH3 EXPRESSION TAG SEQRES 1 A 267 MET ALA HIS HIS HIS HIS HIS HIS MET ASP LEU GLY ILE SEQRES 2 A 267 ALA GLY LYS THR ALA LEU VAL CYS ALA ALA SER LYS GLY SEQRES 3 A 267 LEU GLY ARG GLY CYS ALA GLU ALA LEU ALA ALA GLU GLY SEQRES 4 A 267 VAL ASN LEU VAL ILE VAL ALA ARG THR ARG ASP THR LEU SEQRES 5 A 267 GLU ARG THR ALA ASP GLU ILE ARG ALA ALA SER ASN VAL SEQRES 6 A 267 SER VAL ALA THR VAL ALA CYS ASP ILE THR THR PRO ASP SEQRES 7 A 267 GLY ARG ALA ALA ALA LEU ALA ALA CYS PRO GLN PRO ASP SEQRES 8 A 267 ILE LEU VAL ASN ASN ALA GLY GLY PRO PRO PRO GLY ASP SEQRES 9 A 267 PHE ARG ASP PHE SER HIS ASP ASP TRP ILE ARG ALA LEU SEQRES 10 A 267 GLU SER ASN MET LEU THR PRO ILE GLU LEU ILE ARG ALA SEQRES 11 A 267 THR VAL ASP GLY MET ILE ALA ARG GLY PHE GLY ARG ILE SEQRES 12 A 267 VAL ASN ILE THR SER SER ALA VAL LYS ALA PRO ILE ASP SEQRES 13 A 267 VAL LEU ALA LEU SER ASN GLY ALA ARG SER GLY LEU THR SEQRES 14 A 267 GLY PHE VAL ALA GLY LEU ALA ARG LYS VAL VAL GLY GLN SEQRES 15 A 267 GLY VAL THR ILE ASN ASN LEU LEU PRO GLY LEU PHE ASP SEQRES 16 A 267 THR ASP ARG ILE ALA THR THR LEU ALA ALA ALA ALA ASN SEQRES 17 A 267 ALA GLN GLY VAL THR VAL ASP GLU LEU ARG ALA ARG ARG SEQRES 18 A 267 THR ARG ASP ILE PRO ALA GLY ARG LEU GLY THR ARG ALA SEQRES 19 A 267 GLU PHE GLY ALA ALA CYS ALA PHE LEU CYS SER VAL HIS SEQRES 20 A 267 ALA GLY TYR ILE THR GLY GLN ASN TRP LEU LEU ASP GLY SEQRES 21 A 267 GLY ALA TYR PRO GLY THR PHE SEQRES 1 B 267 MET ALA HIS HIS HIS HIS HIS HIS MET ASP LEU GLY ILE SEQRES 2 B 267 ALA GLY LYS THR ALA LEU VAL CYS ALA ALA SER LYS GLY SEQRES 3 B 267 LEU GLY ARG GLY CYS ALA GLU ALA LEU ALA ALA GLU GLY SEQRES 4 B 267 VAL ASN LEU VAL ILE VAL ALA ARG THR ARG ASP THR LEU SEQRES 5 B 267 GLU ARG THR ALA ASP GLU ILE ARG ALA ALA SER ASN VAL SEQRES 6 B 267 SER VAL ALA THR VAL ALA CYS ASP ILE THR THR PRO ASP SEQRES 7 B 267 GLY ARG ALA ALA ALA LEU ALA ALA CYS PRO GLN PRO ASP SEQRES 8 B 267 ILE LEU VAL ASN ASN ALA GLY GLY PRO PRO PRO GLY ASP SEQRES 9 B 267 PHE ARG ASP PHE SER HIS ASP ASP TRP ILE ARG ALA LEU SEQRES 10 B 267 GLU SER ASN MET LEU THR PRO ILE GLU LEU ILE ARG ALA SEQRES 11 B 267 THR VAL ASP GLY MET ILE ALA ARG GLY PHE GLY ARG ILE SEQRES 12 B 267 VAL ASN ILE THR SER SER ALA VAL LYS ALA PRO ILE ASP SEQRES 13 B 267 VAL LEU ALA LEU SER ASN GLY ALA ARG SER GLY LEU THR SEQRES 14 B 267 GLY PHE VAL ALA GLY LEU ALA ARG LYS VAL VAL GLY GLN SEQRES 15 B 267 GLY VAL THR ILE ASN ASN LEU LEU PRO GLY LEU PHE ASP SEQRES 16 B 267 THR ASP ARG ILE ALA THR THR LEU ALA ALA ALA ALA ASN SEQRES 17 B 267 ALA GLN GLY VAL THR VAL ASP GLU LEU ARG ALA ARG ARG SEQRES 18 B 267 THR ARG ASP ILE PRO ALA GLY ARG LEU GLY THR ARG ALA SEQRES 19 B 267 GLU PHE GLY ALA ALA CYS ALA PHE LEU CYS SER VAL HIS SEQRES 20 B 267 ALA GLY TYR ILE THR GLY GLN ASN TRP LEU LEU ASP GLY SEQRES 21 B 267 GLY ALA TYR PRO GLY THR PHE HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 HOH *447(H2 O) HELIX 1 AA1 LYS A 17 GLU A 30 1 14 HELIX 2 AA2 THR A 40 SER A 55 1 16 HELIX 3 AA3 THR A 68 CYS A 79 1 12 HELIX 4 AA4 ASP A 96 PHE A 100 5 5 HELIX 5 AA5 SER A 101 MET A 113 1 13 HELIX 6 AA6 MET A 113 GLY A 131 1 19 HELIX 7 AA7 SER A 140 LYS A 144 5 5 HELIX 8 AA8 ILE A 147 VAL A 149 5 3 HELIX 9 AA9 LEU A 150 VAL A 172 1 23 HELIX 10 AB1 THR A 188 GLN A 202 1 15 HELIX 11 AB2 THR A 205 ASP A 216 1 12 HELIX 12 AB3 THR A 224 CYS A 236 1 13 HELIX 13 AB4 LYS B 17 ALA B 29 1 13 HELIX 14 AB5 THR B 40 SER B 55 1 16 HELIX 15 AB6 THR B 68 CYS B 79 1 12 HELIX 16 AB7 ASP B 96 PHE B 100 5 5 HELIX 17 AB8 SER B 101 MET B 113 1 13 HELIX 18 AB9 MET B 113 GLY B 131 1 19 HELIX 19 AC1 SER B 140 LYS B 144 5 5 HELIX 20 AC2 ILE B 147 VAL B 149 5 3 HELIX 21 AC3 LEU B 150 VAL B 172 1 23 HELIX 22 AC4 THR B 188 GLY B 203 1 16 HELIX 23 AC5 THR B 205 ASP B 216 1 12 HELIX 24 AC6 THR B 224 CYS B 236 1 13 SHEET 1 AA1 7 VAL A 59 ALA A 63 0 SHEET 2 AA1 7 ASN A 33 ALA A 38 1 N ILE A 36 O ALA A 60 SHEET 3 AA1 7 THR A 9 VAL A 12 1 N ALA A 10 O ASN A 33 SHEET 4 AA1 7 ILE A 84 ASN A 87 1 O VAL A 86 N LEU A 11 SHEET 5 AA1 7 GLY A 133 ILE A 138 1 O ILE A 138 N ASN A 87 SHEET 6 AA1 7 VAL A 176 PRO A 183 1 O ASN A 179 N ASN A 137 SHEET 7 AA1 7 ASN A 247 LEU A 250 1 O TRP A 248 N LEU A 182 SHEET 1 AA2 7 VAL B 59 ALA B 63 0 SHEET 2 AA2 7 ASN B 33 ALA B 38 1 N ILE B 36 O ALA B 60 SHEET 3 AA2 7 THR B 9 VAL B 12 1 N ALA B 10 O ASN B 33 SHEET 4 AA2 7 ILE B 84 ASN B 87 1 O ILE B 84 N LEU B 11 SHEET 5 AA2 7 GLY B 133 ILE B 138 1 O VAL B 136 N LEU B 85 SHEET 6 AA2 7 VAL B 176 PRO B 183 1 O LEU B 181 N ASN B 137 SHEET 7 AA2 7 ASN B 247 LEU B 250 1 O TRP B 248 N LEU B 182 SITE 1 AC1 6 LYS A 17 GLY A 18 ARG A 21 ASP A 189 SITE 2 AC1 6 ARG A 225 HOH A 492 SITE 1 AC2 9 GLY A 18 LEU A 19 THR A 188 ARG A 190 SITE 2 AC2 9 HOH A 402 HOH A 433 HOH A 448 HOH A 492 SITE 3 AC2 9 HOH A 502 SITE 1 AC3 9 GLY B 18 LEU B 19 THR B 188 ARG B 190 SITE 2 AC3 9 HOH B 403 HOH B 459 HOH B 473 HOH B 500 SITE 3 AC3 9 HOH B 545 SITE 1 AC4 10 ARG A 41 LYS B 17 GLY B 18 THR B 188 SITE 2 AC4 10 ASP B 189 ARG B 225 HOH B 405 HOH B 434 SITE 3 AC4 10 HOH B 473 HOH B 498 SITE 1 AC5 6 GLY B 91 SER B 153 ARG B 157 HOH B 402 SITE 2 AC5 6 HOH B 423 HOH B 456 SITE 1 AC6 2 ARG B 212 ARG B 213 SITE 1 AC7 3 ARG B 39 THR B 40 HOH B 451 CRYST1 110.750 110.750 110.050 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009087 0.00000