HEADER TRANSPORT PROTEIN 25-FEB-16 5IEI TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A HIGH AFFINITY IGF2 ANTAGONIST TITLE 2 (DOMAIN11 AB5 RHH) BASED ON HUMAN IGF2R DOMAIN 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1508-1649; COMPND 5 SYNONYM: M6PR,300 KDA MANNOSE 6-PHOSPHATE RECEPTOR,MPR 300,INSULIN- COMPND 6 LIKE GROWTH FACTOR 2 RECEPTOR,INSULIN-LIKE GROWTH FACTOR II RECEPTOR, COMPND 7 IGF-II RECEPTOR,M6P/IGF2 RECEPTOR,M6P/IGF2R; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGF2R, MPRI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26A KEYWDS IGF2, IGF2R, DOMAIN 11, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.D.NICHOLLS,C.WILLIAMS,M.STRICKLAND,S.FRAGO,A.B.HASSAN,M.P.CRUMP REVDAT 6 10-JAN-24 5IEI 1 REMARK REVDAT 5 10-JUL-19 5IEI 1 REMARK REVDAT 4 20-FEB-19 5IEI 1 REMARK LINK REVDAT 3 30-AUG-17 5IEI 1 REMARK REVDAT 2 25-MAY-16 5IEI 1 JRNL REVDAT 1 18-MAY-16 5IEI 0 JRNL AUTH S.FRAGO,R.D.NICHOLLS,M.STRICKLAND,J.HUGHES,C.WILLIAMS, JRNL AUTH 2 L.GARNER,M.SURAKHY,R.MACLEAN,D.REZGUI,S.N.PRINCE, JRNL AUTH 3 O.J.ZACCHEO,D.EBNER,S.SANEGRE,S.YU,F.M.BUFFA,M.P.CRUMP, JRNL AUTH 4 A.B.HASSAN JRNL TITL FUNCTIONAL EVOLUTION OF IGF2:IGF2R DOMAIN 11 BINDING JRNL TITL 2 GENERATES NOVEL STRUCTURAL INTERACTIONS AND A SPECIFIC IGF2 JRNL TITL 3 ANTAGONIST. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E2766 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27140600 JRNL DOI 10.1073/PNAS.1513023113 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 3063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 220 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.52000 REMARK 3 B22 (A**2) : -2.92000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.417 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.074 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1047 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 964 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1418 ; 1.745 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2222 ; 1.029 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;39.872 ;22.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 168 ;15.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 151 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1184 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 253 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 526 ; 1.283 ; 2.632 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 525 ; 1.283 ; 2.630 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 654 ; 2.242 ; 3.937 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 655 ; 2.241 ; 3.940 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 521 ; 1.601 ; 2.827 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 519 ; 1.602 ; 2.821 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 764 ; 2.716 ; 4.166 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1104 ; 3.986 ;20.829 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1105 ; 3.988 ;20.844 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3414 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GP0 REMARK 200 REMARK 200 REMARK: ELONGATED CLEAR BARS, NORMALLY CRYSTALISE FROM DROPLET REMARK 200 EDGE INWARD. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 0.1M BIS-(2 REMARK 280 -HYDROXYETHYL)IMINO-TRIS(HYDROXYMETHYL METHANE, PH 7.0., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1508 REMARK 465 LYS A 1509 REMARK 465 SER A 1510 REMARK 465 GLU A 1617 REMARK 465 ALA A 1618 REMARK 465 GLY A 1619 REMARK 465 PRO A 1620 REMARK 465 THR A 1621 REMARK 465 LEU A 1648 REMARK 465 ALA A 1649 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 1516 CB CYS A 1553 1.97 REMARK 500 OD1 ASN A 1520 OG SER A 1522 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1580 86.07 -68.72 REMARK 500 ASP A1585 47.59 39.92 REMARK 500 SER A1600 -159.23 -147.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 GOL A 1701 REMARK 615 EDO A 1702 REMARK 615 EDO A 1703 REMARK 615 SO4 A 1704 REMARK 615 SO4 A 1705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GP0 RELATED DB: PDB REMARK 900 1GP0 IS THE WILD TYPE CRYSTAL STRUCTURE OF IGF2R DOMAIN 11 REMARK 900 RELATED ID: 2L2A RELATED DB: PDB REMARK 900 2L2A IS A NMR STRUCTURE OF A MUTANT OF DOMAIN11 OF IGF2R CONTAINING REMARK 900 THREE MUTATIONS IN ONE OF THE LOOPS (AB) REMARK 900 RELATED ID: 2L29 RELATED DB: PDB REMARK 900 2L29 IS IS A NMR STRUCTURE OF A MUTANT OF DOMAIN11 OF IGF2R REMARK 900 CONTAINING THREE MUTATIONS IN ONE OF THE LOOPS (AB) IN COMPLEX WITH REMARK 900 MATURE HUMAN IGF2 REMARK 900 RELATED ID: 2M68 RELATED DB: PDB REMARK 900 2M68 IS THE NMR STRUCTURE OF A MUTANT OF DOMAIN11 OF IGF2R REMARK 900 CONTAINING FIVE MUTATIONS IN ONE OF THE LOOPS (AB). THIS STRUCTURE REMARK 900 IS TERMED DOMAIN11 34D OR AB5 REMARK 900 RELATED ID: 2M6T RELATED DB: PDB REMARK 900 2M6T IS IS THE NMR STRUCTURE OF A MUTANT OF DOMAIN11 OF IGF2R REMARK 900 CONTAINING FIVE MUTATIONS IN ONE OF THE LOOPS (AB). IN COMPLEX WITH REMARK 900 MATURE HUMAN IGF2. THIS STRUCTURE IS TERMED DOMAIN11 34D OR AB5. DBREF 5IEI A 1508 1649 UNP P11717 MPRI_HUMAN 1508 1649 SEQADV 5IEI ALA A 1543 UNP P11717 SER 1543 ENGINEERED MUTATION SEQADV 5IEI LYS A 1544 UNP P11717 GLU 1544 ENGINEERED MUTATION SEQADV 5IEI GLY A 1545 UNP P11717 LYS 1545 ENGINEERED MUTATION SEQADV 5IEI TRP A 1546 UNP P11717 GLY 1546 ENGINEERED MUTATION SEQADV 5IEI GLY A 1547 UNP P11717 LEU 1547 ENGINEERED MUTATION SEQADV 5IEI ARG A 1569 UNP P11717 GLN 1569 ENGINEERED MUTATION SEQADV 5IEI HIS A 1597 UNP P11717 PRO 1597 ENGINEERED MUTATION SEQADV 5IEI HIS A 1602 UNP P11717 SER 1602 ENGINEERED MUTATION SEQADV 5IEI GLY A 1619 UNP P11717 ARG 1619 VARIANT SEQADV 5IEI LEU A 1648 UNP P11717 GLN 1648 ENGINEERED MUTATION SEQRES 1 A 142 MET LYS SER ASN GLU HIS ASP ASP CYS GLN VAL THR ASN SEQRES 2 A 142 PRO SER THR GLY HIS LEU PHE ASP LEU SER SER LEU SER SEQRES 3 A 142 GLY ARG ALA GLY PHE THR ALA ALA TYR ALA LYS GLY TRP SEQRES 4 A 142 GLY VAL TYR MET SER ILE CYS GLY GLU ASN GLU ASN CYS SEQRES 5 A 142 PRO PRO GLY VAL GLY ALA CYS PHE GLY ARG THR ARG ILE SEQRES 6 A 142 SER VAL GLY LYS ALA ASN LYS ARG LEU ARG TYR VAL ASP SEQRES 7 A 142 GLN VAL LEU GLN LEU VAL TYR LYS ASP GLY SER HIS CYS SEQRES 8 A 142 PRO SER LYS HIS GLY LEU SER TYR LYS SER VAL ILE SER SEQRES 9 A 142 PHE VAL CYS ARG PRO GLU ALA GLY PRO THR ASN ARG PRO SEQRES 10 A 142 MET LEU ILE SER LEU ASP LYS GLN THR CYS THR LEU PHE SEQRES 11 A 142 PHE SER TRP HIS THR PRO LEU ALA CYS GLU LEU ALA HET GOL A1701 6 HET EDO A1702 4 HET EDO A1703 4 HET SO4 A1704 5 HET SO4 A1705 5 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 SO4 2(O4 S 2-) HELIX 1 AA1 SER A 1530 SER A 1533 5 4 HELIX 2 AA2 PRO A 1643 CYS A 1646 5 4 SHEET 1 AA110 GLU A1512 HIS A1513 0 SHEET 2 AA110 LEU A1581 VAL A1584 -1 O LEU A1581 N HIS A1513 SHEET 3 AA110 VAL A1587 TYR A1592 -1 O VAL A1587 N VAL A1584 SHEET 4 AA110 LYS A1607 CYS A1614 -1 O PHE A1612 N LEU A1588 SHEET 5 AA110 THR A1635 THR A1642 1 O PHE A1638 N VAL A1609 SHEET 6 AA110 MET A1625 ASP A1630 -1 N SER A1628 O PHE A1637 SHEET 7 AA110 PHE A1538 TYR A1542 1 N ALA A1541 O LEU A1626 SHEET 8 AA110 VAL A1548 MET A1550 -1 O VAL A1548 N ALA A1540 SHEET 9 AA110 VAL A1563 PHE A1567 -1 O CYS A1566 N TYR A1549 SHEET 10 AA110 SER A1573 LYS A1576 -1 O VAL A1574 N ALA A1565 SHEET 1 AA2 2 GLN A1517 ASN A1520 0 SHEET 2 AA2 2 HIS A1525 ASP A1528 -1 O PHE A1527 N VAL A1518 SSBOND 1 CYS A 1516 CYS A 1553 1555 1555 2.09 SSBOND 2 CYS A 1559 CYS A 1566 1555 1555 2.12 SSBOND 3 CYS A 1598 CYS A 1634 1555 1555 2.03 SSBOND 4 CYS A 1614 CYS A 1646 1555 1555 2.05 CRYST1 42.120 48.560 62.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023742 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015987 0.00000