HEADER IMMUNE SYSTEM/ VIRAL PROTEIN 25-FEB-16 5IES TITLE CRYSTAL STRUCTURE OF VRC01C-HUGL2 FAB FROM AN HIV-1 NAIVE DONOR IN TITLE 2 COMPLEX WITH WITH A GERMLINE-TARGETING GP120 ENGINEERED OUTER DOMAIN TITLE 3 EOD-GT8 AT 2.16 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: VRC01CHUGL2 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VRC01CHUGL2 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER DOMAIN EOD- COMPND 11 GT8; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 FREESTYLE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFUSESS-CHIG-HG1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 FREESTYLE; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PFUSESS-CHIG-HG1; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS HIV-1 GP120, ENGINEERED OUTER DOMAIN (EOD), GERMLINE TARGETING, CD4 KEYWDS 2 BINDING SITE, VRC01-CLASS NAIVE HUMAN GERMLINE ANTIBODY, IMMUNE KEYWDS 3 SYSTEM, VIRAL-PROTEIN COMPLEX, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX, KEYWDS 4 IMMUNE SYSTEM- VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SARKAR,I.A.WILSON REVDAT 3 27-SEP-23 5IES 1 HETSYN REVDAT 2 29-JUL-20 5IES 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 06-APR-16 5IES 0 JRNL AUTH J.G.JARDINE,D.W.KULP,C.HAVENAR-DAUGHTON,A.SARKAR,B.BRINEY, JRNL AUTH 2 D.SOK,F.SESTERHENN,J.ERENO-ORBEA,O.KALYUZHNIY,I.DERESA,X.HU, JRNL AUTH 3 S.SPENCER,M.JONES,E.GEORGESON,Y.ADACHI,M.KUBITZ,A.C.DECAMP, JRNL AUTH 4 J.P.JULIEN,I.A.WILSON,D.R.BURTON,S.CROTTY,W.R.SCHIEF JRNL TITL HIV-1 BROADLY NEUTRALIZING ANTIBODY PRECURSOR B CELLS JRNL TITL 2 REVEALED BY GERMLINE-TARGETING IMMUNOGEN. JRNL REF SCIENCE V. 351 1458 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27013733 JRNL DOI 10.1126/SCIENCE.AAD9195 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 52503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4588 - 5.7603 0.84 2545 129 0.1988 0.2224 REMARK 3 2 5.7603 - 4.5734 0.89 2600 132 0.1538 0.1491 REMARK 3 3 4.5734 - 3.9957 0.87 2505 131 0.1509 0.1595 REMARK 3 4 3.9957 - 3.6305 0.90 2574 131 0.1732 0.2019 REMARK 3 5 3.6305 - 3.3704 0.92 2624 133 0.1906 0.2284 REMARK 3 6 3.3704 - 3.1717 0.93 2624 148 0.1975 0.2323 REMARK 3 7 3.1717 - 3.0129 0.94 2662 141 0.2029 0.2240 REMARK 3 8 3.0129 - 2.8818 0.94 2675 146 0.1999 0.2531 REMARK 3 9 2.8818 - 2.7708 0.89 2499 124 0.2131 0.2584 REMARK 3 10 2.7708 - 2.6752 0.91 2594 131 0.2125 0.2459 REMARK 3 11 2.6752 - 2.5916 0.94 2658 137 0.2151 0.2598 REMARK 3 12 2.5916 - 2.5175 0.95 2650 145 0.2227 0.2932 REMARK 3 13 2.5175 - 2.4512 0.95 2708 132 0.2206 0.2648 REMARK 3 14 2.4512 - 2.3914 0.95 2657 154 0.2271 0.2602 REMARK 3 15 2.3914 - 2.3371 0.96 2680 138 0.2336 0.2727 REMARK 3 16 2.3371 - 2.2873 0.96 2712 141 0.2299 0.2489 REMARK 3 17 2.2873 - 2.2416 0.96 2679 130 0.2392 0.2952 REMARK 3 18 2.2416 - 2.1993 0.96 2712 145 0.2456 0.2549 REMARK 3 19 2.1993 - 2.1600 0.91 2539 138 0.2525 0.2543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4724 REMARK 3 ANGLE : 0.782 6438 REMARK 3 CHIRALITY : 0.051 720 REMARK 3 PLANARITY : 0.004 820 REMARK 3 DIHEDRAL : 13.986 2865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN C AND ( RESID 1:169 OR RESID 1001:1002 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3424 -44.5681 -27.6916 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.5786 REMARK 3 T33: 0.4646 T12: 0.1748 REMARK 3 T13: 0.0552 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.8238 L22: 3.7701 REMARK 3 L33: 3.6469 L12: 0.0146 REMARK 3 L13: -0.2038 L23: 0.6970 REMARK 3 S TENSOR REMARK 3 S11: -0.1669 S12: -0.5698 S13: -0.2629 REMARK 3 S21: 0.1986 S22: 0.0891 S23: -0.3406 REMARK 3 S31: 0.2264 S32: 0.2644 S33: 0.0769 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7561 -12.8459 -19.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.3592 REMARK 3 T33: 0.2910 T12: -0.0086 REMARK 3 T13: 0.0324 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 6.1380 L22: 4.8540 REMARK 3 L33: 2.5837 L12: -3.3251 REMARK 3 L13: -1.6684 L23: 1.9169 REMARK 3 S TENSOR REMARK 3 S11: -0.0893 S12: 0.0731 S13: 0.1386 REMARK 3 S21: -0.0295 S22: 0.1623 S23: -0.4676 REMARK 3 S31: 0.0094 S32: 0.4841 S33: -0.0699 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 113:212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.3212 -21.8409 -4.0278 REMARK 3 T TENSOR REMARK 3 T11: 0.3821 T22: 0.3089 REMARK 3 T33: 0.3285 T12: 0.0172 REMARK 3 T13: 0.0521 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 5.6401 L22: 4.8921 REMARK 3 L33: 4.0988 L12: 2.8188 REMARK 3 L13: -2.3697 L23: -1.9109 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: -0.2943 S13: -0.3380 REMARK 3 S21: 0.1109 S22: -0.0594 S23: 0.1151 REMARK 3 S31: 0.3982 S32: -0.0653 S33: 0.1639 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1142 -34.2883 -29.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.4698 T22: 0.4549 REMARK 3 T33: 0.4751 T12: 0.0607 REMARK 3 T13: 0.0518 T23: -0.1174 REMARK 3 L TENSOR REMARK 3 L11: 4.0052 L22: 0.2375 REMARK 3 L33: 1.1163 L12: -0.3726 REMARK 3 L13: -1.2836 L23: 0.0477 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.1967 S13: -0.3453 REMARK 3 S21: -0.1249 S22: -0.0509 S23: 0.1195 REMARK 3 S31: 0.1539 S32: 0.1083 S33: 0.0867 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN H AND RESID 119:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.0535 -22.8551 -18.8558 REMARK 3 T TENSOR REMARK 3 T11: 0.3272 T22: 0.3235 REMARK 3 T33: 0.3770 T12: -0.0485 REMARK 3 T13: -0.0333 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 3.5512 L22: 5.8582 REMARK 3 L33: 3.6762 L12: -0.6925 REMARK 3 L13: -0.1461 L23: 0.7480 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.0389 S13: 0.0800 REMARK 3 S21: -0.0704 S22: -0.0395 S23: 0.6251 REMARK 3 S31: -0.2710 S32: -0.3605 S33: 0.1252 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V706E REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V706E REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.154 REMARK 200 RESOLUTION RANGE LOW (A) : 46.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4JPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID (PH 4.0), 20% (W/V) REMARK 280 PEG6000 WITH AN OVERALL PH 5.0 OF THE SOLUTION, CRYO-PROTECTED REMARK 280 WITH 25% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.27650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.30200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.94800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.27650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.30200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.94800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.27650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.30200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.94800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.27650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.30200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 SER L 27A REMARK 465 VAL L 27B REMARK 465 LEU L 27C REMARK 465 TYR L 27D REMARK 465 SER L 27E REMARK 465 SER L 27F REMARK 465 ASN L 27G REMARK 465 ASN L 27H REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 SER C 31 REMARK 465 ASN C 32 REMARK 465 ALA C 170 REMARK 465 SER C 171 REMARK 465 THR C 172 REMARK 465 GLY C 173 REMARK 465 THR C 174 REMARK 465 GLY C 175 REMARK 465 THR C 176 REMARK 465 LYS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 465 HIS C 180 REMARK 465 HIS C 181 REMARK 465 HIS C 182 REMARK 465 HIS C 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 202 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 196 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 127 -149.21 -148.25 REMARK 500 ASP H 144 57.91 70.79 REMARK 500 THR H 160 -32.21 -131.62 REMARK 500 TYR L 32 35.90 -90.89 REMARK 500 ALA L 51 -36.43 69.80 REMARK 500 ALA L 84 177.05 177.41 REMARK 500 TYR L 91 -127.71 47.13 REMARK 500 ASN L 138 64.61 61.13 REMARK 500 ASN L 152 -4.60 78.14 REMARK 500 ASP C 44 -147.42 -144.03 REMARK 500 GLN C 61 -55.37 67.97 REMARK 500 ASP C 79 103.63 -162.86 REMARK 500 ALA C 129 -158.23 -92.84 REMARK 500 LYS C 130 -35.34 -139.47 REMARK 500 ALA C 165 65.67 -161.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IF0 RELATED DB: PDB REMARK 900 RELATED ID: 5IFA RELATED DB: PDB DBREF 5IES H 1 216 PDB 5IES 5IES 1 216 DBREF 5IES L 1 214 PDB 5IES 5IES 1 214 DBREF 5IES C 1 183 PDB 5IES 5IES 1 183 SEQRES 1 H 221 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 221 PRO ASN SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 221 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 221 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA LYS ILE SER GLY SER TYR SER SEQRES 9 H 221 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 221 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 221 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 221 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 221 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 221 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 216 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 216 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 216 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 216 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 216 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 216 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 216 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 216 TYR TYR CYS GLN GLN TYR TYR SER PHE GLY GLY GLY THR SEQRES 9 L 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU ARG SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 183 ASP THR ILE THR LEU PRO CYS ARG PRO ALA PRO PRO PRO SEQRES 2 C 183 HIS CYS SER SER ASN ILE THR GLY LEU ILE LEU THR ARG SEQRES 3 C 183 GLN GLY GLY TYR SER ASN ALA ASN THR VAL ILE PHE ARG SEQRES 4 C 183 PRO SER GLY GLY ASP TRP ARG ASP ILE ALA ARG CYS GLN SEQRES 5 C 183 ILE ALA GLY THR VAL VAL SER THR GLN LEU PHE LEU ASN SEQRES 6 C 183 GLY SER LEU ALA GLU GLU GLU VAL VAL ILE ARG SER GLU SEQRES 7 C 183 ASP TRP ARG ASP ASN ALA LYS SER ILE CYS VAL GLN LEU SEQRES 8 C 183 ALA THR SER VAL GLU ILE ALA CYS THR GLY ALA GLY HIS SEQRES 9 C 183 CYS ALA ILE SER ARG ALA LYS TRP ALA ASN THR LEU LYS SEQRES 10 C 183 GLN ILE ALA SER LYS LEU ARG GLU GLN TYR GLY ALA LYS SEQRES 11 C 183 THR ILE ILE PHE LYS PRO SER SER GLY GLY ASP PRO GLU SEQRES 12 C 183 PHE VAL ASN HIS SER PHE ASN CYS GLY GLY GLU PHE PHE SEQRES 13 C 183 TYR CYS ALA SER THR GLN LEU PHE ALA SER THR TRP PHE SEQRES 14 C 183 ALA SER THR GLY THR GLY THR LYS HIS HIS HIS HIS HIS SEQRES 15 C 183 HIS HET GOL H 301 6 HET GOL L 301 6 HET GOL L 302 6 HET NAG C1001 14 HET NAG C1002 14 HETNAM GOL GLYCEROL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 NAG 2(C8 H15 N O6) FORMUL 9 HOH *187(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 THR H 73 ILE H 75 5 3 HELIX 4 AA4 ARG H 83 THR H 87 5 5 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLN L 79 VAL L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 LYS L 188 1 6 HELIX 11 AB2 PRO C 12 SER C 16 5 5 HELIX 12 AB3 ASP C 44 GLN C 52 1 9 HELIX 13 AB4 ARG C 109 GLY C 128 1 20 HELIX 14 AB5 ASP C 141 ASN C 146 1 6 HELIX 15 AB6 SER C 160 PHE C 164 5 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 ILE H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 ILE H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 PHE H 100A TRP H 103 -1 O TYR H 102 N LYS H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 SER L 97 PHE L 98 -1 O SER L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB3 7 LEU C 62 LEU C 64 0 SHEET 2 AB3 7 SER C 17 ARG C 26 -1 N THR C 20 O PHE C 63 SHEET 3 AB3 7 ILE C 87 CYS C 99 -1 O VAL C 95 N ILE C 19 SHEET 4 AB3 7 HIS C 104 SER C 108 -1 O ALA C 106 N ALA C 98 SHEET 5 AB3 7 THR C 2 ARG C 8 -1 N ILE C 3 O ILE C 107 SHEET 6 AB3 7 GLU C 154 CYS C 158 -1 O TYR C 157 N ARG C 8 SHEET 7 AB3 7 HIS C 147 CYS C 151 -1 N HIS C 147 O CYS C 158 SHEET 1 AB4 6 VAL C 74 ARG C 76 0 SHEET 2 AB4 6 ILE C 87 CYS C 99 -1 O CYS C 88 N ARG C 76 SHEET 3 AB4 6 SER C 17 ARG C 26 -1 N ILE C 19 O VAL C 95 SHEET 4 AB4 6 THR C 35 PRO C 40 -1 O ARG C 39 N THR C 25 SHEET 5 AB4 6 THR C 131 PHE C 134 1 O ILE C 133 N PHE C 38 SHEET 6 AB4 6 SER C 166 TRP C 168 -1 O TRP C 168 N ILE C 132 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS C 7 CYS C 158 1555 1555 2.04 SSBOND 6 CYS C 15 CYS C 151 1555 1555 2.05 SSBOND 7 CYS C 51 CYS C 88 1555 1555 2.04 SSBOND 8 CYS C 99 CYS C 105 1555 1555 2.06 LINK ND2 ASN C 18 C1 NAG C1001 1555 1555 1.44 LINK ND2 ASN C 65 C1 NAG C1002 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -5.71 CISPEP 2 GLU H 148 PRO H 149 0 -3.59 CISPEP 3 SER L 7 PRO L 8 0 -6.81 CISPEP 4 TYR L 140 PRO L 141 0 1.13 CISPEP 5 ARG C 8 PRO C 9 0 -5.92 CRYST1 102.553 138.604 147.896 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006762 0.00000