HEADER VIRAL PROTEIN 25-FEB-16 5IF5 TITLE CRYSTAL STRUCTURE OF POLYMERASE ACID PROTEIN (PA) FROM INFLUENZA A TITLE 2 VIRUS, WILSON-SMITH/1933 (H1N1) BOUND TO EBSI-39 (2,3- TITLE 3 DICHLOROPHENYL)METHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/1933 SOURCE 3 H1N1); SOURCE 4 ORGANISM_TAXID: 381518; SOURCE 5 STRAIN: A/WILSON-SMITH/1933 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, STRUCTURAL GENOMICS, FLU, FRAGMENT SCREENING, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, VIRAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 06-MAR-24 5IF5 1 REMARK REVDAT 1 08-MAR-17 5IF5 0 JRNL AUTH P.PIERCE,M.M.MURUTHI,J.ABENDROTH,S.O.MOEN,D.W.BEGLEY, JRNL AUTH 2 D.R.DAVIES,V.M.MARATHIAS,B.L.STAKER,P.J.MYLER,D.D.LORIMER, JRNL AUTH 3 T.E.EDWARDS JRNL TITL FRAGMENT SCREENING BY STD NMR IDENTIFIES NOVEL SITE BINDERS JRNL TITL 2 AGAINST INFLUENZA A VIRUS POLYMERASE PA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2666: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4461 - 4.6788 0.99 3196 176 0.1874 0.2163 REMARK 3 2 4.6788 - 3.7142 1.00 2976 143 0.1605 0.1690 REMARK 3 3 3.7142 - 3.2448 1.00 2912 153 0.1706 0.2055 REMARK 3 4 3.2448 - 2.9482 1.00 2912 121 0.1730 0.2307 REMARK 3 5 2.9482 - 2.7369 1.00 2828 150 0.1746 0.2201 REMARK 3 6 2.7369 - 2.5755 1.00 2842 166 0.1747 0.2171 REMARK 3 7 2.5755 - 2.4466 1.00 2813 141 0.1716 0.1886 REMARK 3 8 2.4466 - 2.3401 1.00 2862 130 0.1923 0.2593 REMARK 3 9 2.3401 - 2.2500 1.00 2828 142 0.1966 0.2494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3278 REMARK 3 ANGLE : 0.852 4429 REMARK 3 CHIRALITY : 0.045 496 REMARK 3 PLANARITY : 0.005 561 REMARK 3 DIHEDRAL : 13.074 1995 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8600 -32.1409 50.9933 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.2644 REMARK 3 T33: 0.2930 T12: 0.0865 REMARK 3 T13: 0.0656 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 0.6973 L22: 2.0482 REMARK 3 L33: 1.8521 L12: 0.6478 REMARK 3 L13: 0.8495 L23: -0.6475 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0647 S13: -0.0543 REMARK 3 S21: -0.1409 S22: -0.0820 S23: -0.1533 REMARK 3 S31: 0.0328 S32: -0.0852 S33: 0.1078 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5057 -45.7751 62.3222 REMARK 3 T TENSOR REMARK 3 T11: 0.4073 T22: 0.2226 REMARK 3 T33: 0.2929 T12: 0.0630 REMARK 3 T13: 0.0720 T23: 0.0883 REMARK 3 L TENSOR REMARK 3 L11: 2.1214 L22: 2.4286 REMARK 3 L33: 2.8319 L12: -0.2270 REMARK 3 L13: 1.2392 L23: 0.0623 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.3076 S13: -0.1631 REMARK 3 S21: 0.1569 S22: 0.1350 S23: 0.2098 REMARK 3 S31: 0.4527 S32: -0.2730 S33: -0.0856 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6902 -34.5406 58.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.2451 REMARK 3 T33: 0.2918 T12: 0.0804 REMARK 3 T13: 0.0231 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.6878 L22: 2.0504 REMARK 3 L33: 2.2982 L12: -1.0117 REMARK 3 L13: 0.5429 L23: -0.9066 REMARK 3 S TENSOR REMARK 3 S11: -0.2445 S12: -0.0635 S13: -0.0262 REMARK 3 S21: 0.1526 S22: 0.0595 S23: -0.0869 REMARK 3 S31: 0.0901 S32: -0.0430 S33: 0.2155 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 603 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4196 -25.0520 51.5274 REMARK 3 T TENSOR REMARK 3 T11: 0.2565 T22: 0.2413 REMARK 3 T33: 0.2592 T12: 0.1133 REMARK 3 T13: 0.0687 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.7494 L22: 1.7165 REMARK 3 L33: 2.7708 L12: -0.2935 REMARK 3 L13: 0.0472 L23: -0.5304 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0267 S13: 0.1335 REMARK 3 S21: 0.0002 S22: 0.0752 S23: -0.0119 REMARK 3 S31: -0.3188 S32: -0.2646 S33: -0.0133 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 604 THROUGH 675 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9799 -13.1212 35.7668 REMARK 3 T TENSOR REMARK 3 T11: 0.6146 T22: 0.3379 REMARK 3 T33: 0.4240 T12: 0.0039 REMARK 3 T13: 0.0959 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 0.6704 L22: 1.3220 REMARK 3 L33: 1.8443 L12: 0.0278 REMARK 3 L13: -0.5066 L23: -0.7417 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.2578 S13: 0.2666 REMARK 3 S21: -0.1559 S22: -0.0376 S23: -0.2309 REMARK 3 S31: -0.8483 S32: 0.1464 S33: 0.1388 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 676 THROUGH 713 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2916 -21.0764 40.0961 REMARK 3 T TENSOR REMARK 3 T11: 0.3880 T22: 0.5444 REMARK 3 T33: 0.6086 T12: 0.0038 REMARK 3 T13: 0.0731 T23: 0.1773 REMARK 3 L TENSOR REMARK 3 L11: 2.8734 L22: 2.1036 REMARK 3 L33: 0.9337 L12: 2.2256 REMARK 3 L13: -1.6253 L23: -1.1833 REMARK 3 S TENSOR REMARK 3 S11: -0.3026 S12: -0.0054 S13: 0.1235 REMARK 3 S21: 0.0063 S22: -0.0931 S23: -0.7741 REMARK 3 S31: 0.1180 S32: 0.9044 S33: 0.2342 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML PROTEIN AGAINST MORPHEUS D10 REMARK 280 WITH 10% PEG 8000, 20% EG, 0.02 M EACH ALCOHOL, 0.1 M BICINE/ REMARK 280 TRISMA BASE PH 8.5, CRYSTAL TRACKING ID 263964D10, UNIQUE PUCK REMARK 280 ID PYL5-5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 263.78667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.89333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 197.84000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.94667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 329.73333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 263.78667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 131.89333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.94667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 197.84000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 329.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -34.21500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -59.26212 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.94667 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE DISTANCE BETWEEN RESIDUE A GLU 677 AND RESIDUE A PHE 681 IS REMARK 400 20.95 ANGSTROM DESPITE THE FACT THAT THERE ARE ONLY 3 RESIDUES (NOT REMARK 400 ENOUGH SEQUENCE) TO COVER THE GAP REGION. ONE POSSIBILITY FOR THAT REMARK 400 IS SOME DOMAIN SWAPPING FOR THE LAST TWO HELICES (NOTE THAT E677 IS REMARK 400 CLOSER TO THE SYMMETRY RELATED F681). ANOTHER POSSIBILITY IS THAT REMARK 400 THE PROTEIN IS CLIPPED. THERE IS A BIT OF A DOUBLET IN THE SDS PAGE REMARK 400 OF THIS PROTEIN. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 253 REMARK 465 ASN A 254 REMARK 465 ALA A 255 REMARK 465 ARG A 256 REMARK 465 ILE A 257 REMARK 465 GLU A 258 REMARK 465 PRO A 259 REMARK 465 PHE A 260 REMARK 465 LEU A 261 REMARK 465 LYS A 262 REMARK 465 SER A 263 REMARK 465 THR A 264 REMARK 465 SER A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 ASN A 373 REMARK 465 MET A 374 REMARK 465 ALA A 375 REMARK 465 PRO A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 VAL A 379 REMARK 465 ASP A 380 REMARK 465 PHE A 381 REMARK 465 ASP A 382 REMARK 465 ASP A 383 REMARK 465 CYS A 384 REMARK 465 LYS A 385 REMARK 465 ASP A 386 REMARK 465 VAL A 387 REMARK 465 GLY A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 LYS A 391 REMARK 465 GLN A 392 REMARK 465 TYR A 393 REMARK 465 ASP A 394 REMARK 465 SER A 395 REMARK 465 ASP A 396 REMARK 465 GLU A 397 REMARK 465 PRO A 398 REMARK 465 SER A 616 REMARK 465 GLU A 617 REMARK 465 THR A 618 REMARK 465 TRP A 619 REMARK 465 PRO A 620 REMARK 465 VAL A 621 REMARK 465 GLY A 622 REMARK 465 PRO A 678 REMARK 465 GLY A 679 REMARK 465 THR A 680 REMARK 465 ALA A 714 REMARK 465 LEU A 715 REMARK 465 ARG A 716 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 TYR A 305 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 GLU A 436 CG CD OE1 OE2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 ARG A 496 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 554 CG1 CG2 CD1 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 GLU A 623 CG CD OE1 OE2 REMARK 470 GLU A 629 CG CD OE1 OE2 REMARK 470 GLN A 654 CG CD OE1 NE2 REMARK 470 ARG A 673 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 677 CG CD OE1 OE2 REMARK 470 PHE A 681 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 GLU A 692 CG CD OE1 OE2 REMARK 470 PHE A 710 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 713 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 474 CB CYS A 474 SG -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 284 -98.34 -113.64 REMARK 500 GLU A 430 35.33 -140.35 REMARK 500 ALA A 476 59.55 -146.42 REMARK 500 MET A 595 -85.66 79.51 REMARK 500 ILE A 695 -64.81 -107.75 REMARK 500 ASN A 696 -0.35 -158.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 594 MET A 595 35.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6B0 A 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IUJ RELATED DB: PDB REMARK 900 RELATED ID: 5IEQ RELATED DB: PDB REMARK 900 RELATED ID: 5IF2 RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-INVAN.07057.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5IF4 RELATED DB: PDB REMARK 900 RELATED ID: 5IF7 RELATED DB: PDB REMARK 900 RELATED ID: 5IF8 RELATED DB: PDB REMARK 900 RELATED ID: 5IFB RELATED DB: PDB REMARK 900 RELATED ID: 5IFC RELATED DB: PDB REMARK 900 RELATED ID: 5IFD RELATED DB: PDB DBREF 5IF5 A 254 716 UNP P15659 PA_I33A0 254 716 SEQADV 5IF5 GLY A 253 UNP P15659 EXPRESSION TAG SEQRES 1 A 464 GLY ASN ALA ARG ILE GLU PRO PHE LEU LYS SER THR PRO SEQRES 2 A 464 ARG PRO LEU ARG LEU PRO ASP GLY PRO PRO CYS SER GLN SEQRES 3 A 464 ARG SER LYS PHE LEU LEU MET ASP ALA LEU LYS LEU SER SEQRES 4 A 464 ILE GLU ASP PRO SER HIS GLU GLY GLU GLY ILE PRO LEU SEQRES 5 A 464 TYR ASP ALA ILE LYS CYS MET ARG THR PHE PHE GLY TRP SEQRES 6 A 464 LYS GLU PRO ASN VAL VAL LYS PRO HIS GLU LYS GLY ILE SEQRES 7 A 464 ASN PRO ASN TYR LEU LEU SER TRP LYS GLN VAL LEU ALA SEQRES 8 A 464 GLU LEU GLN ASP ILE GLU ASN GLU GLU LYS ILE PRO ARG SEQRES 9 A 464 THR LYS ASN MET LYS LYS THR SER GLN LEU LYS TRP ALA SEQRES 10 A 464 LEU GLY GLU ASN MET ALA PRO GLU LYS VAL ASP PHE ASP SEQRES 11 A 464 ASP CYS LYS ASP VAL GLY ASP LEU LYS GLN TYR ASP SER SEQRES 12 A 464 ASP GLU PRO GLU LEU ARG SER LEU ALA SER TRP ILE GLN SEQRES 13 A 464 ASN GLU PHE ASN LYS ALA CYS GLU LEU THR ASP SER SER SEQRES 14 A 464 TRP ILE GLU LEU ASP GLU ILE GLY GLU ASP ALA ALA PRO SEQRES 15 A 464 ILE GLU HIS ILE ALA SER MET ARG ARG ASN TYR PHE THR SEQRES 16 A 464 ALA GLU VAL SER HIS CYS ARG ALA THR GLU TYR ILE MET SEQRES 17 A 464 LYS GLY VAL TYR ILE ASN THR ALA LEU LEU ASN ALA SER SEQRES 18 A 464 CYS ALA ALA MET ASP ASP PHE GLN LEU ILE PRO MET ILE SEQRES 19 A 464 SER LYS CYS ARG THR LYS GLU GLY ARG ARG LYS THR ASN SEQRES 20 A 464 LEU TYR GLY PHE ILE ILE LYS GLY ARG SER HIS LEU ARG SEQRES 21 A 464 ASN ASP THR ASP VAL VAL ASN PHE VAL SER MET GLU PHE SEQRES 22 A 464 SER LEU THR ASP PRO ARG LEU GLU PRO HIS LYS TRP GLU SEQRES 23 A 464 LYS TYR CYS VAL LEU GLU VAL GLY ASP MET LEU LEU ARG SEQRES 24 A 464 SER ALA ILE GLY HIS VAL SER ARG PRO MET PHE LEU TYR SEQRES 25 A 464 VAL ARG THR ASN GLY THR SER LYS ILE LYS MET LYS TRP SEQRES 26 A 464 GLY MET GLU MET ARG ARG CYS LEU LEU GLN SER LEU GLN SEQRES 27 A 464 GLN ILE GLU SER MET ILE GLU ALA GLU SER SER VAL LYS SEQRES 28 A 464 GLU LYS ASP MET THR LYS GLU PHE PHE GLU ASN LYS SER SEQRES 29 A 464 GLU THR TRP PRO VAL GLY GLU SER PRO LYS GLY VAL GLU SEQRES 30 A 464 GLU GLY SER ILE GLY LYS VAL CYS ARG THR LEU LEU ALA SEQRES 31 A 464 LYS SER VAL PHE ASN SER LEU TYR ALA SER PRO GLN LEU SEQRES 32 A 464 GLU GLY PHE SER ALA GLU SER ARG LYS LEU LEU LEU ILE SEQRES 33 A 464 VAL GLN ALA LEU ARG ASP ASN LEU GLU PRO GLY THR PHE SEQRES 34 A 464 ASP LEU GLY GLY LEU TYR GLU ALA ILE GLU GLU CYS LEU SEQRES 35 A 464 ILE ASN ASP PRO TRP VAL LEU LEU ASN ALA SER TRP PHE SEQRES 36 A 464 ASN SER PHE LEU THR HIS ALA LEU ARG HET DMS A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET EDO A 804 4 HET 6B0 A 805 20 HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM 6B0 (2,3-DICHLOROPHENYL)METHANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DMS C2 H6 O S FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 6B0 C7 H6 CL2 O FORMUL 7 HOH *145(H2 O) HELIX 1 AA1 ILE A 302 THR A 313 1 12 HELIX 2 AA2 ILE A 330 GLU A 351 1 22 HELIX 3 AA3 THR A 363 LEU A 370 1 8 HELIX 4 AA4 SER A 405 CYS A 415 1 11 HELIX 5 AA5 GLU A 436 SER A 451 1 16 HELIX 6 AA6 CYS A 453 ALA A 476 1 24 HELIX 7 AA7 ASP A 529 GLU A 538 5 10 HELIX 8 AA8 LYS A 572 GLU A 580 1 9 HELIX 9 AA9 ARG A 582 GLU A 604 1 23 HELIX 10 AB1 MET A 607 ASN A 614 1 8 HELIX 11 AB2 SER A 632 TYR A 650 1 19 HELIX 12 AB3 SER A 652 LEU A 676 1 25 HELIX 13 AB4 LEU A 683 GLU A 692 1 10 HELIX 14 AB5 ASP A 697 HIS A 713 1 17 SHEET 1 AA1 4 LEU A 290 GLU A 293 0 SHEET 2 AA1 4 ARG A 496 LYS A 506 -1 O THR A 498 N ILE A 292 SHEET 3 AA1 4 PHE A 480 THR A 491 -1 N ILE A 483 O ILE A 504 SHEET 4 AA1 4 LYS A 358 MET A 360 -1 N MET A 360 O PHE A 480 SHEET 1 AA2 7 TRP A 317 LYS A 324 0 SHEET 2 AA2 7 CYS A 541 LEU A 550 -1 O VAL A 542 N VAL A 323 SHEET 3 AA2 7 VAL A 557 SER A 571 -1 O ARG A 559 N MET A 548 SHEET 4 AA2 7 VAL A 517 SER A 526 -1 N SER A 526 O PHE A 562 SHEET 5 AA2 7 ARG A 496 LYS A 506 -1 N PHE A 503 O MET A 523 SHEET 6 AA2 7 PHE A 480 THR A 491 -1 N ILE A 483 O ILE A 504 SHEET 7 AA2 7 SER A 420 SER A 421 -1 N SER A 421 O ARG A 490 SITE 1 AC1 6 LYS A 281 ASN A 466 LEU A 469 PHE A 520 SITE 2 AC1 6 THR A 570 HOH A 926 SITE 1 AC2 4 LYS A 318 GLU A 319 LEU A 342 6B0 A 805 SITE 1 AC3 5 LYS A 281 SER A 648 HOH A 926 HOH A 968 SITE 2 AC3 5 HOH A 971 SITE 1 AC4 3 GLN A 408 TRP A 706 HOH A 959 SITE 1 AC5 6 TRP A 317 LEU A 342 LEU A 345 GLN A 346 SITE 2 AC5 6 GLU A 349 EDO A 802 CRYST1 68.430 68.430 395.680 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014613 0.008437 0.000000 0.00000 SCALE2 0.000000 0.016874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002527 0.00000